Wall clock time and date at job start Mon Mar 30 2020 01:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32990 * 1 3 3 C 1.50703 * 119.99652 * 2 1 4 4 N 1.46899 * 109.47418 * 94.74926 * 3 2 1 5 5 C 1.46892 * 111.00234 * 76.56730 * 4 3 2 6 6 C 1.46904 * 110.99722 * 200.52568 * 4 3 2 7 7 C 1.47099 * 120.00434 * 179.97438 * 2 1 3 8 8 O 1.21609 * 120.00313 * 260.47901 * 7 2 1 9 9 N 1.34778 * 119.99730 * 80.47881 * 7 2 1 10 10 C 1.46504 * 119.99902 * 184.21662 * 9 7 2 11 11 C 1.50702 * 109.47255 * 270.00014 * 10 9 7 12 12 H 1.08004 * 119.99551 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00215 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99645 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99925 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47534 * 59.99843 * 15 13 11 17 17 H 1.48506 * 109.47041 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47128 * 299.99653 * 15 13 11 19 19 C 1.46502 * 120.00243 * 4.22040 * 9 7 2 20 20 C 1.52992 * 109.47377 * 95.79418 * 19 9 7 21 21 C 1.52999 * 117.49981 * 242.89384 * 20 19 9 22 22 C 1.52998 * 60.00136 * 252.50995 * 21 20 19 23 23 H 1.07994 * 120.00154 * 0.02562 * 1 2 3 24 24 H 1.08003 * 119.99789 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46859 * 214.74582 * 3 2 1 26 26 H 1.08995 * 109.46976 * 334.74140 * 3 2 1 27 27 H 1.08998 * 109.47162 * 53.34315 * 5 4 3 28 28 H 1.08998 * 109.47050 * 173.34385 * 5 4 3 29 29 H 1.08999 * 109.47506 * 293.34148 * 5 4 3 30 30 H 1.09002 * 109.47206 * 64.29221 * 6 4 3 31 31 H 1.09000 * 109.46849 * 184.28941 * 6 4 3 32 32 H 1.08997 * 109.46803 * 304.28924 * 6 4 3 33 33 H 1.08997 * 109.47022 * 30.00096 * 10 9 7 34 34 H 1.08999 * 109.47239 * 150.00210 * 10 9 7 35 35 H 0.96996 * 119.99321 * 179.97438 * 14 13 11 36 36 H 1.09005 * 109.47115 * 215.79870 * 19 9 7 37 37 H 1.09000 * 109.46618 * 335.79227 * 19 9 7 38 38 H 1.08998 * 115.55073 * 28.60654 * 20 19 9 39 39 H 1.09003 * 117.49843 * 0.02562 * 21 20 19 40 40 H 1.09005 * 117.49719 * 145.01470 * 21 20 19 41 41 H 1.08995 * 117.49864 * 252.51048 * 22 21 20 42 42 H 1.09001 * 117.49464 * 107.48713 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0833 1.3052 0.0000 4 7 2.4275 1.6720 1.3802 5 6 3.5595 0.8744 1.8702 6 6 2.7105 3.1095 1.4878 7 6 2.0655 -1.2739 0.0006 8 8 2.5204 -1.7129 1.0394 9 7 2.2352 -1.9545 -1.1503 10 6 2.8864 -3.2667 -1.1360 11 6 4.3727 -3.0920 -1.3143 12 1 4.7904 -2.1024 -1.4265 13 6 5.1992 -4.1954 -1.3330 14 7 4.6905 -5.4004 -1.1958 15 14 7.0414 -3.9787 -1.5532 16 1 7.5780 -3.1473 -0.4460 17 1 7.7015 -5.3089 -1.5389 18 1 7.3093 -3.3078 -2.8507 19 6 1.7687 -1.3820 -2.4156 20 6 2.9298 -0.6696 -3.1120 21 6 2.8037 0.8395 -3.3304 22 6 2.6796 -0.1183 -4.5171 23 1 -0.5400 0.9352 -0.0004 24 1 -0.5400 -0.9354 0.0004 25 1 2.9963 1.1976 -0.5857 26 1 1.4601 2.0844 -0.4385 27 1 4.3911 0.9555 1.1703 28 1 3.8693 1.2453 2.8472 29 1 3.2580 -0.1695 1.9569 30 1 1.8078 3.6757 1.2580 31 1 3.0360 3.3407 2.5021 32 1 3.4974 3.3786 0.7834 33 1 2.6902 -3.7594 -0.1837 34 1 2.4923 -3.8768 -1.9487 35 1 5.2720 -6.1767 -1.2094 36 1 1.3931 -2.1784 -3.0581 37 1 0.9697 -0.6673 -2.2182 38 1 3.9219 -1.0661 -2.8962 39 1 1.8937 1.3248 -2.9776 40 1 3.7131 1.4362 -3.2581 41 1 3.5073 -0.1517 -5.2255 42 1 1.6878 -0.2631 -4.9453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764498223.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:50 Heat of formation + Delta-G solvation = 0.128965 kcal Electronic energy + Delta-G solvation = -21484.104261 eV Core-core repulsion = 18465.124836 eV Total energy + Delta-G solvation = -3018.979425 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.01737 -38.47521 -38.12251 -36.05256 -34.90429 -34.09112 -29.77532 -28.42358 -27.87530 -27.70974 -25.56027 -23.38101 -23.15301 -22.32150 -21.50051 -19.36899 -18.64626 -17.70984 -17.21771 -16.53323 -16.33096 -16.20678 -15.91065 -15.83512 -15.28296 -14.80904 -14.67886 -14.32883 -13.84867 -13.61843 -13.44045 -13.31218 -13.18376 -12.90984 -12.75017 -12.73154 -12.58978 -12.37867 -12.27441 -12.22276 -11.98306 -11.60941 -11.18622 -10.81494 -10.66489 -10.58815 -10.16172 -9.44917 -9.30234 -8.22802 -6.34940 0.97099 1.31464 1.35336 1.42367 1.76459 2.31788 2.45331 3.01486 3.07395 3.19659 3.69001 3.91593 3.99941 4.09440 4.19762 4.29898 4.37810 4.41875 4.47790 4.58877 4.69368 4.72174 4.78750 4.83262 4.84350 4.87649 5.02118 5.03091 5.09394 5.18276 5.24458 5.34136 5.42633 5.48473 5.58735 5.61400 5.85910 5.98694 6.06944 6.17484 6.70288 6.79003 7.28441 7.47953 8.84562 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.007016 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.507999 B = 3989.977916 C = 4468.463620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.157 4.157 3 C 0.108 3.892 4 N -0.548 5.548 5 C 0.010 3.990 6 C 0.023 3.977 7 C 0.536 3.464 8 O -0.584 6.584 9 N -0.593 5.593 10 C 0.262 3.738 11 C -0.527 4.527 12 H 0.051 0.949 13 C 0.009 3.991 14 N -0.928 5.928 15 Si 0.959 3.041 16 H -0.280 1.280 17 H -0.277 1.277 18 H -0.263 1.263 19 C 0.146 3.854 20 C -0.194 4.194 21 C -0.164 4.164 22 C -0.161 4.161 23 H 0.152 0.848 24 H 0.099 0.901 25 H 0.030 0.970 26 H 0.121 0.879 27 H 0.006 0.994 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.025 0.975 33 H -0.003 1.003 34 H 0.022 0.978 35 H 0.266 0.734 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.513 17.761 -4.109 20.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.161 4.161 3 C -0.020 4.020 4 N -0.271 5.271 5 C -0.138 4.138 6 C -0.124 4.124 7 C 0.325 3.675 8 O -0.466 6.466 9 N -0.323 5.323 10 C 0.141 3.859 11 C -0.566 4.566 12 H 0.069 0.931 13 C -0.190 4.190 14 N -0.568 5.568 15 Si 0.783 3.217 16 H -0.206 1.206 17 H -0.202 1.202 18 H -0.188 1.188 19 C 0.023 3.977 20 C -0.213 4.213 21 C -0.201 4.201 22 C -0.198 4.198 23 H 0.170 0.830 24 H 0.117 0.883 25 H 0.048 0.952 26 H 0.139 0.861 27 H 0.024 0.976 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.015 0.985 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.123 0.877 38 H 0.095 0.905 39 H 0.134 0.866 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.623 17.224 -3.295 19.541 hybrid contribution 2.218 -0.733 -0.331 2.359 sum -6.405 16.491 -3.626 18.059 Atomic orbital electron populations 1.24512 0.92795 1.04152 0.93682 1.21397 0.96325 0.92648 1.05707 1.21048 0.98632 0.93276 0.89006 1.62031 1.38188 1.05781 1.21127 1.22677 0.91285 1.00552 0.99269 1.22520 1.01431 0.86657 1.01838 1.19323 0.79529 0.85547 0.83067 1.90654 1.51964 1.70394 1.33588 1.48194 1.57196 1.19723 1.07149 1.18740 0.91871 0.79884 0.95394 1.21581 0.92991 0.92628 1.49375 0.93103 1.25776 1.03481 0.94814 0.94943 1.70036 1.37200 0.98565 1.51022 0.85605 0.79657 0.77542 0.78855 1.20567 1.20181 1.18755 1.21237 0.95046 0.97838 0.83538 1.22738 1.00186 0.97376 1.01030 1.23087 1.03622 0.91062 1.02344 1.22982 1.03800 1.02878 0.90164 0.83029 0.88298 0.95175 0.86072 0.97555 0.90824 0.91130 0.89053 0.90985 0.95628 0.98530 0.95979 0.92500 0.90748 0.87711 0.90479 0.86643 0.89518 0.89055 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.57 13.16 66.65 0.88 -1.70 16 2 C -0.16 -4.80 3.52 -18.70 -0.07 -4.86 16 3 C 0.11 2.82 5.18 85.56 0.44 3.26 16 4 N -0.55 -15.35 4.93 -953.50 -4.70 -20.05 16 5 C 0.01 0.36 9.29 127.69 1.19 1.55 16 6 C 0.02 0.45 9.51 127.69 1.21 1.67 16 7 C 0.54 23.26 6.73 86.57 0.58 23.84 16 8 O -0.58 -31.42 13.84 -4.06 -0.06 -31.47 16 9 N -0.59 -25.90 2.46 -830.44 -2.05 -27.95 16 10 C 0.26 14.45 5.17 85.63 0.44 14.89 16 11 C -0.53 -30.82 8.66 25.60 0.22 -30.60 16 12 H 0.05 2.98 6.62 -2.91 -0.02 2.96 16 13 C 0.01 0.50 5.46 84.65 0.46 0.97 16 14 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 15 Si 0.96 46.04 29.54 68.60 2.03 48.06 16 16 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 17 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 18 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 19 C 0.15 4.73 5.69 86.38 0.49 5.22 16 20 C -0.19 -6.13 5.95 -10.80 -0.06 -6.20 16 21 C -0.16 -3.73 9.63 30.59 0.29 -3.44 16 22 C -0.16 -3.71 10.25 30.59 0.31 -3.39 16 23 H 0.15 2.19 8.02 -2.91 -0.02 2.17 16 24 H 0.10 2.33 8.05 -2.91 -0.02 2.31 16 25 H 0.03 0.90 7.28 -2.39 -0.02 0.89 16 26 H 0.12 2.13 7.79 -2.39 -0.02 2.11 16 27 H 0.01 0.21 7.93 -2.39 -0.02 0.20 16 28 H 0.07 2.22 7.94 -2.39 -0.02 2.20 16 29 H 0.07 3.09 4.65 -2.39 -0.01 3.07 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.33 7.96 -2.39 -0.02 1.31 16 32 H 0.03 0.49 8.13 -2.39 -0.02 0.47 16 33 H 0.00 -0.22 7.48 -2.39 -0.02 -0.23 16 34 H 0.02 1.24 7.95 -2.39 -0.02 1.22 16 35 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.07 2.37 7.98 -2.38 -0.02 2.35 16 37 H 0.10 2.62 5.68 -2.39 -0.01 2.61 16 38 H 0.08 3.20 6.15 -2.39 -0.01 3.19 16 39 H 0.12 2.03 8.03 -2.39 -0.02 2.01 16 40 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -75.05 342.10 2.88 -72.17 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.98 Total: 14.78 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 6.40 Total: 1.21 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -6.46 Total: -104.74 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.06 Total: -31.47 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -75.05 2.88 -72.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764498223.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.295 kcal (2) G-P(sol) polarization free energy of solvation -75.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds