Wall clock time and date at job start Mon Mar 30 2020 01:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46504 * 110.99859 * 2 1 4 4 C 1.51591 * 110.90976 * 174.86222 * 3 2 1 5 5 C 1.49963 * 114.92357 * 46.13491 * 4 3 2 6 6 H 1.08998 * 107.83064 * 202.26358 * 5 4 3 7 7 C 1.53701 * 112.63081 * 82.95073 * 5 4 3 8 8 N 1.47182 * 105.60587 * 202.87844 * 7 5 4 9 9 C 1.34779 * 125.40441 * 198.54600 * 8 7 5 10 10 O 1.21275 * 120.00067 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99905 * 180.02562 * 9 8 7 12 12 C 1.52995 * 109.46935 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47287 * 180.02562 * 12 11 9 14 14 H 1.07998 * 119.99601 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00198 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00202 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99928 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47246 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46783 * 120.00271 * 17 15 13 20 20 H 1.48500 * 109.47528 * 240.00255 * 17 15 13 21 21 C 1.46916 * 109.19337 * 18.58188 * 8 7 5 22 22 C 1.53045 * 115.71254 * 323.62343 * 5 4 3 23 23 H 1.09006 * 111.24452 * 274.72166 * 22 5 4 24 24 C 1.46705 * 110.99840 * 237.04606 * 2 1 3 25 25 H 1.09000 * 109.47496 * 182.95623 * 1 2 3 26 26 H 1.09005 * 109.47169 * 302.96188 * 1 2 3 27 27 H 1.09001 * 109.47152 * 62.95246 * 1 2 3 28 28 H 1.09001 * 109.19342 * 295.23544 * 3 2 1 29 29 H 1.09007 * 109.18981 * 54.54745 * 3 2 1 30 30 H 1.08997 * 108.39416 * 284.72397 * 4 3 2 31 31 H 1.09003 * 108.38976 * 167.54254 * 4 3 2 32 32 H 1.09003 * 110.21591 * 83.84896 * 7 5 4 33 33 H 1.09000 * 110.29219 * 321.95229 * 7 5 4 34 34 H 1.08997 * 109.47293 * 300.00109 * 11 9 8 35 35 H 1.09007 * 109.46588 * 60.00182 * 11 9 8 36 36 H 1.09002 * 109.47583 * 300.00526 * 12 11 9 37 37 H 1.08998 * 109.47431 * 60.00401 * 12 11 9 38 38 H 0.96992 * 120.00352 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.87003 * 120.77905 * 21 8 7 40 40 H 1.09005 * 109.87578 * 241.90021 * 21 8 7 41 41 H 1.08999 * 109.44013 * 70.06578 * 24 2 1 42 42 H 1.09002 * 109.43386 * 310.19433 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9940 1.3677 0.0000 4 6 3.5046 1.3674 0.1268 5 6 4.2136 0.3939 -0.7668 6 1 5.1920 0.1922 -0.3308 7 6 4.4246 0.9408 -2.1876 8 7 4.5883 -0.2428 -3.0471 9 6 5.1363 -0.2438 -4.2785 10 8 5.5436 0.7913 -4.7618 11 6 5.2431 -1.5311 -5.0546 12 6 5.8969 -1.2565 -6.4103 13 6 6.0031 -2.5437 -7.1868 14 1 5.6409 -3.4655 -6.7562 15 6 6.5636 -2.5447 -8.4465 16 7 7.0061 -1.4224 -8.9703 17 14 6.6959 -4.1404 -9.4087 18 1 6.1303 -5.2525 -8.6032 19 1 5.9388 -4.0159 -10.6801 20 1 8.1230 -4.4213 -9.7078 21 6 4.0588 -1.4227 -2.3502 22 6 3.5024 -0.9429 -0.9889 23 1 3.7353 -1.6512 -0.1937 24 6 1.9947 -0.7450 -1.1493 25 1 -0.3634 -1.0263 0.0530 26 1 -0.3634 0.5592 0.8623 27 1 -0.3633 0.4673 -0.9153 28 1 1.7127 1.8596 -0.9312 29 1 1.5649 1.9162 0.8386 30 1 3.7629 1.1367 1.1603 31 1 3.8688 2.3697 -0.0989 32 1 5.3213 1.5595 -2.2238 33 1 3.5559 1.5184 -2.5033 34 1 5.8501 -2.2432 -4.4957 35 1 4.2469 -1.9457 -5.2094 36 1 5.2895 -0.5445 -6.9692 37 1 6.8930 -0.8417 -6.2560 38 1 7.4001 -1.4231 -9.8566 39 1 3.2597 -1.8732 -2.9391 40 1 4.8569 -2.1476 -2.1897 41 1 1.7975 -0.1868 -2.0644 42 1 1.5053 -1.7174 -1.2057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812578380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:00 Heat of formation + Delta-G solvation = -43.364719 kcal Electronic energy + Delta-G solvation = -20645.527396 eV Core-core repulsion = 17624.661943 eV Total energy + Delta-G solvation = -3020.865453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.64566 -38.58654 -36.33981 -33.48835 -33.18604 -31.58151 -30.91850 -28.49573 -26.70564 -25.93078 -24.31576 -22.80938 -22.07164 -21.21643 -18.98466 -18.50947 -16.93901 -16.55795 -15.83172 -15.77084 -15.30686 -15.04703 -14.68671 -14.41337 -14.21679 -13.60162 -13.46714 -13.06637 -12.77005 -12.58026 -12.38102 -12.24170 -12.12576 -11.91629 -11.75102 -11.40624 -11.12147 -10.93876 -10.82686 -10.63753 -10.55669 -10.45700 -9.93753 -9.63889 -9.15635 -8.99034 -8.63769 -8.36432 -8.29464 -5.94910 -3.99237 3.24859 3.31594 3.33320 3.40587 3.44046 3.61721 4.25271 4.39541 4.48262 4.51815 4.76431 4.87457 5.03230 5.07693 5.17157 5.18804 5.24993 5.35814 5.40010 5.41527 5.46002 5.56725 5.57065 5.60474 5.74881 5.79325 5.80836 5.98223 5.99819 6.11378 6.24917 6.26577 6.59393 6.74493 6.76415 6.91380 7.76133 7.87763 7.87988 8.08645 8.39921 8.76717 9.09444 9.64217 11.16151 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036207 B = 0.003658 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.145642 B = 7652.099434 C = 8058.590634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.539 5.539 3 C 0.055 3.945 4 C -0.101 4.101 5 C -0.092 4.092 6 H 0.077 0.923 7 C 0.111 3.889 8 N -0.629 5.629 9 C 0.525 3.475 10 O -0.534 6.534 11 C -0.124 4.124 12 C 0.036 3.964 13 C -0.525 4.525 14 H 0.056 0.944 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.106 3.894 22 C -0.083 4.083 23 H 0.099 0.901 24 C 0.058 3.942 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.025 0.975 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.260 0.740 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.040 0.960 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.670 2.284 21.570 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.263 5.263 3 C -0.073 4.073 4 C -0.139 4.139 5 C -0.111 4.111 6 H 0.095 0.905 7 C -0.012 4.012 8 N -0.367 5.367 9 C 0.316 3.684 10 O -0.409 6.409 11 C -0.164 4.164 12 C -0.001 4.001 13 C -0.564 4.564 14 H 0.075 0.925 15 C -0.144 4.144 16 N -0.528 5.528 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.018 4.018 22 C -0.102 4.102 23 H 0.117 0.883 24 C -0.070 4.070 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.041 0.959 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.158 2.692 21.477 24.352 hybrid contribution -0.218 -0.444 -1.300 1.391 sum -11.377 2.247 20.177 23.272 Atomic orbital electron populations 1.22372 0.87174 1.02320 1.00553 1.62014 1.07641 1.14163 1.42453 1.21750 0.95465 0.89384 1.00661 1.20476 0.94142 0.99252 1.00073 1.20978 1.00074 0.95040 0.95013 0.90471 1.21911 1.01356 0.89270 0.88637 1.48604 1.62524 1.08761 1.16769 1.21335 0.75445 0.92645 0.78977 1.90671 1.47565 1.34854 1.67787 1.21848 1.02604 0.92520 0.99394 1.18917 0.96337 0.96887 0.88001 1.21253 1.40065 0.94164 1.00904 0.92547 1.25032 0.95504 0.96190 0.97707 1.70008 1.40536 1.25808 1.16497 0.86533 0.77703 0.83729 0.79982 1.19732 1.21028 1.21012 1.22135 0.98607 0.88882 0.92222 1.21837 0.94271 0.97275 0.96847 0.88294 1.22184 0.94642 0.98702 0.91456 0.91201 0.91383 0.95603 0.94989 0.90630 0.91148 0.91140 0.90875 0.92541 0.90298 0.90390 0.95862 0.95815 0.93012 0.91118 0.91086 0.94184 0.90351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.56 60.06 0.57 0.75 16 2 N -0.54 -4.76 4.95 -244.38 -1.21 -5.97 16 3 C 0.06 0.46 5.44 -4.75 -0.03 0.44 16 4 C -0.10 -0.83 5.41 -28.95 -0.16 -0.99 16 5 C -0.09 -0.91 2.72 -91.74 -0.25 -1.15 16 6 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 7 C 0.11 1.48 6.11 -3.31 -0.02 1.46 16 8 N -0.63 -9.84 3.33 -171.32 -0.57 -10.41 16 9 C 0.52 10.80 7.84 -10.98 -0.09 10.72 16 10 O -0.53 -13.27 16.28 5.56 0.09 -13.18 16 11 C -0.12 -2.62 4.81 -27.88 -0.13 -2.76 16 12 C 0.04 1.00 4.26 -27.89 -0.12 0.88 16 13 C -0.53 -15.12 9.11 -34.44 -0.31 -15.43 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.74 13.29 55.43 0.74 -27.01 16 17 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 C 0.11 1.23 5.93 -2.93 -0.02 1.21 16 22 C -0.08 -0.79 3.48 -89.76 -0.31 -1.10 16 23 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 24 C 0.06 0.54 4.37 -3.98 -0.02 0.52 16 25 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 26 H 0.07 0.43 8.11 -51.93 -0.42 0.00 16 27 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.03 0.29 8.09 -51.93 -0.42 -0.13 16 29 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.54 7.98 -51.93 -0.41 0.12 16 32 H 0.07 1.05 8.12 -51.93 -0.42 0.63 16 33 H 0.06 0.77 8.07 -51.93 -0.42 0.35 16 34 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 36 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.07 0.79 7.70 -51.93 -0.40 0.39 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.04 0.44 7.88 -51.93 -0.41 0.03 16 42 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 LS Contribution 332.66 15.07 5.01 5.01 Total: -1.00 -34.24 332.66 -9.44 -43.68 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -7.51 Total: -5.08 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -0.97 Total: -3.87 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: -1.04 Total: -43.38 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.24 -9.44 -43.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812578380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.319 kcal (2) G-P(sol) polarization free energy of solvation -34.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds