Wall clock time and date at job start Mon Mar 30 2020 01:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46504 * 110.99859 * 2 1 4 4 C 1.51591 * 110.90976 * 174.86222 * 3 2 1 5 5 C 1.49963 * 114.92357 * 46.13491 * 4 3 2 6 6 H 1.08998 * 107.83064 * 202.26358 * 5 4 3 7 7 C 1.53701 * 112.63081 * 82.95073 * 5 4 3 8 8 N 1.47182 * 105.60587 * 202.87844 * 7 5 4 9 9 C 1.34779 * 125.40441 * 198.54600 * 8 7 5 10 10 O 1.21275 * 120.00067 * 0.02562 * 9 8 7 11 11 C 1.50703 * 119.99905 * 180.02562 * 9 8 7 12 12 C 1.52995 * 109.46935 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47287 * 180.02562 * 12 11 9 14 14 H 1.07998 * 119.99601 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00198 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00202 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99928 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47246 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46783 * 120.00271 * 17 15 13 20 20 H 1.48500 * 109.47528 * 240.00255 * 17 15 13 21 21 C 1.46916 * 109.19337 * 18.58188 * 8 7 5 22 22 C 1.53045 * 115.71254 * 323.62343 * 5 4 3 23 23 H 1.09006 * 111.24452 * 274.72166 * 22 5 4 24 24 C 1.46705 * 110.99840 * 237.04606 * 2 1 3 25 25 H 1.09000 * 109.47496 * 182.95623 * 1 2 3 26 26 H 1.09005 * 109.47169 * 302.96188 * 1 2 3 27 27 H 1.09001 * 109.47152 * 62.95246 * 1 2 3 28 28 H 1.09001 * 109.19342 * 295.23544 * 3 2 1 29 29 H 1.09007 * 109.18981 * 54.54745 * 3 2 1 30 30 H 1.08997 * 108.39416 * 284.72397 * 4 3 2 31 31 H 1.09003 * 108.38976 * 167.54254 * 4 3 2 32 32 H 1.09003 * 110.21591 * 83.84896 * 7 5 4 33 33 H 1.09000 * 110.29219 * 321.95229 * 7 5 4 34 34 H 1.08997 * 109.47293 * 300.00109 * 11 9 8 35 35 H 1.09007 * 109.46588 * 60.00182 * 11 9 8 36 36 H 1.09002 * 109.47583 * 300.00526 * 12 11 9 37 37 H 1.08998 * 109.47431 * 60.00401 * 12 11 9 38 38 H 0.96992 * 120.00352 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.87003 * 120.77905 * 21 8 7 40 40 H 1.09005 * 109.87578 * 241.90021 * 21 8 7 41 41 H 1.08999 * 109.44013 * 70.06578 * 24 2 1 42 42 H 1.09002 * 109.43386 * 310.19433 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9940 1.3677 0.0000 4 6 3.5046 1.3674 0.1268 5 6 4.2136 0.3939 -0.7668 6 1 5.1920 0.1922 -0.3308 7 6 4.4246 0.9408 -2.1876 8 7 4.5883 -0.2428 -3.0471 9 6 5.1363 -0.2438 -4.2785 10 8 5.5436 0.7913 -4.7618 11 6 5.2431 -1.5311 -5.0546 12 6 5.8969 -1.2565 -6.4103 13 6 6.0031 -2.5437 -7.1868 14 1 5.6409 -3.4655 -6.7562 15 6 6.5636 -2.5447 -8.4465 16 7 7.0061 -1.4224 -8.9703 17 14 6.6959 -4.1404 -9.4087 18 1 6.1303 -5.2525 -8.6032 19 1 5.9388 -4.0159 -10.6801 20 1 8.1230 -4.4213 -9.7078 21 6 4.0588 -1.4227 -2.3502 22 6 3.5024 -0.9429 -0.9889 23 1 3.7353 -1.6512 -0.1937 24 6 1.9947 -0.7450 -1.1493 25 1 -0.3634 -1.0263 0.0530 26 1 -0.3634 0.5592 0.8623 27 1 -0.3633 0.4673 -0.9153 28 1 1.7127 1.8596 -0.9312 29 1 1.5649 1.9162 0.8386 30 1 3.7629 1.1367 1.1603 31 1 3.8688 2.3697 -0.0989 32 1 5.3213 1.5595 -2.2238 33 1 3.5559 1.5184 -2.5033 34 1 5.8501 -2.2432 -4.4957 35 1 4.2469 -1.9457 -5.2094 36 1 5.2895 -0.5445 -6.9692 37 1 6.8930 -0.8417 -6.2560 38 1 7.4001 -1.4231 -9.8566 39 1 3.2597 -1.8732 -2.9391 40 1 4.8569 -2.1476 -2.1897 41 1 1.7975 -0.1868 -2.0644 42 1 1.5053 -1.7174 -1.2057 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812578380.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:00 Heat of formation + Delta-G solvation = -67.149565 kcal Electronic energy + Delta-G solvation = -20646.558785 eV Core-core repulsion = 17624.661943 eV Total energy + Delta-G solvation = -3021.896841 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.68015 -39.94571 -37.38182 -35.60476 -34.17097 -32.96455 -32.46542 -29.54823 -27.71712 -27.48490 -25.57690 -23.75549 -23.04253 -22.86154 -20.21050 -19.59128 -18.78441 -17.69204 -17.47742 -16.68375 -16.48660 -16.28176 -16.18746 -15.70809 -15.30102 -14.72337 -14.46756 -14.30657 -14.05246 -13.89965 -13.76370 -13.30370 -13.23096 -13.06905 -12.89686 -12.83781 -12.52929 -12.45164 -12.16963 -11.96940 -11.71119 -11.54726 -11.38334 -11.30759 -11.20687 -10.77086 -10.59184 -9.68419 -9.30555 -8.19186 -6.33737 1.41821 1.43631 1.57043 1.62692 2.00134 2.42703 2.93836 3.13761 3.38092 3.57129 3.72334 3.94359 4.04629 4.17503 4.27363 4.30740 4.38581 4.43121 4.47273 4.54236 4.57063 4.61714 4.69381 4.72058 4.78141 4.88815 4.95627 4.99884 5.05253 5.06088 5.18408 5.24948 5.33751 5.42451 5.49522 5.58989 5.82741 6.07183 6.12408 6.15340 6.45940 6.84558 7.19337 7.36716 8.93949 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036207 B = 0.003658 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.145642 B = 7652.099434 C = 8058.590634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.541 5.541 3 C 0.054 3.946 4 C -0.099 4.099 5 C -0.082 4.082 6 H 0.085 0.915 7 C 0.106 3.894 8 N -0.621 5.621 9 C 0.521 3.479 10 O -0.593 6.593 11 C -0.110 4.110 12 C 0.042 3.958 13 C -0.542 4.542 14 H 0.077 0.923 15 C -0.008 4.008 16 N -0.939 5.939 17 Si 0.977 3.023 18 H -0.251 1.251 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.095 3.905 22 C -0.072 4.072 23 H 0.123 0.877 24 C 0.059 3.941 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.018 0.982 28 H 0.017 0.983 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.103 0.897 35 H 0.101 0.899 36 H -0.020 1.020 37 H -0.018 1.018 38 H 0.263 0.737 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.018 0.982 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.865 -0.231 23.804 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.265 5.265 3 C -0.074 4.074 4 C -0.137 4.137 5 C -0.101 4.101 6 H 0.103 0.897 7 C -0.016 4.016 8 N -0.355 5.355 9 C 0.312 3.688 10 O -0.473 6.473 11 C -0.150 4.150 12 C 0.005 3.995 13 C -0.580 4.580 14 H 0.095 0.905 15 C -0.206 4.206 16 N -0.579 5.579 17 Si 0.800 3.200 18 H -0.175 1.175 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.027 4.027 22 C -0.091 4.091 23 H 0.141 0.859 24 C -0.069 4.069 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.037 0.963 28 H 0.035 0.965 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.119 0.881 36 H -0.001 1.001 37 H 0.000 1.000 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.036 0.964 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.396 0.147 23.785 26.822 hybrid contribution 0.109 0.403 -1.933 1.977 sum -12.287 0.550 21.853 25.076 Atomic orbital electron populations 1.22435 0.86287 1.03052 1.00735 1.62064 1.08507 1.14167 1.41768 1.21802 0.95619 0.89380 1.00594 1.20472 0.93904 0.98977 1.00358 1.20969 1.01026 0.95517 0.92579 0.89672 1.22091 1.00372 0.88571 0.90587 1.48513 1.60318 1.11249 1.15384 1.21136 0.75699 0.91532 0.80418 1.90644 1.50596 1.36416 1.69649 1.21588 1.03489 0.93542 0.96342 1.18698 0.93873 0.95669 0.91279 1.21720 1.39892 0.94956 1.01388 0.90481 1.26176 0.94821 1.00420 0.99137 1.70190 1.41606 1.28931 1.17134 0.85233 0.77831 0.78784 0.78143 1.17452 1.20608 1.20568 1.22503 0.99414 0.87605 0.93212 1.21849 0.94091 0.97195 0.95967 0.85865 1.22169 0.94732 0.99169 0.90828 0.90347 0.90194 0.96330 0.96483 0.89067 0.89511 0.90787 0.92469 0.93088 0.87878 0.88129 1.00129 0.99995 0.92826 0.90182 0.89542 0.96407 0.89027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.56 127.69 1.22 1.50 16 2 N -0.54 -8.13 4.95 -927.08 -4.59 -12.73 16 3 C 0.05 0.79 5.44 85.92 0.47 1.26 16 4 C -0.10 -1.39 5.41 29.16 0.16 -1.23 16 5 C -0.08 -1.44 2.72 -11.52 -0.03 -1.47 16 6 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 7 C 0.11 2.83 6.11 86.49 0.53 3.36 16 8 N -0.62 -19.16 3.33 -814.33 -2.71 -21.87 16 9 C 0.52 22.04 7.84 87.66 0.69 22.73 16 10 O -0.59 -31.34 16.28 -3.02 -0.05 -31.39 16 11 C -0.11 -4.68 4.81 29.85 0.14 -4.53 16 12 C 0.04 2.44 4.26 29.85 0.13 2.57 16 13 C -0.54 -31.38 9.11 25.60 0.23 -31.15 16 14 H 0.08 4.05 7.74 -2.91 -0.02 4.03 16 15 C -0.01 -0.49 5.46 84.65 0.46 -0.02 16 16 N -0.94 -60.45 13.29 21.45 0.28 -60.17 16 17 Si 0.98 44.68 29.54 68.60 2.03 46.71 16 18 H -0.25 -10.54 7.11 99.48 0.71 -9.83 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 C 0.10 1.99 5.93 86.88 0.51 2.50 16 22 C -0.07 -1.15 3.48 -10.23 -0.04 -1.18 16 23 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 24 C 0.06 0.96 4.37 86.31 0.38 1.34 16 25 H 0.08 0.83 8.12 -2.39 -0.02 0.81 16 26 H 0.08 0.79 8.11 -2.38 -0.02 0.77 16 27 H 0.02 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.02 0.30 8.09 -2.39 -0.02 0.28 16 29 H 0.09 1.06 8.09 -2.38 -0.02 1.04 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.00 7.98 -2.39 -0.02 0.99 16 32 H 0.06 1.70 8.12 -2.39 -0.02 1.68 16 33 H 0.05 1.42 8.07 -2.39 -0.02 1.40 16 34 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16 35 H 0.10 3.79 8.14 -2.38 -0.02 3.78 16 36 H -0.02 -1.29 8.10 -2.39 -0.02 -1.30 16 37 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 38 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 39 H 0.08 1.58 7.70 -2.39 -0.02 1.56 16 40 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.02 0.37 7.88 -2.39 -0.02 0.35 16 42 H 0.09 1.25 8.06 -2.39 -0.02 1.23 16 Total: -1.00 -78.17 332.66 0.77 -77.39 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 0.96 Total: 6.39 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 4.85 Total: -4.34 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -7.02 Total: -94.77 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.05 Total: -31.39 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -78.17 0.77 -77.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812578380.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.244 kcal (2) G-P(sol) polarization free energy of solvation -78.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds