Wall clock time and date at job start Mon Mar 30 2020 00:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50696 * 119.99991 * 2 1 4 4 C 1.53005 * 109.46930 * 294.99941 * 3 2 1 5 5 C 1.53004 * 109.46914 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46921 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00128 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99793 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00049 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00063 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46948 * 60.00429 * 10 8 6 12 12 H 1.48499 * 109.47473 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47550 * 300.00608 * 10 8 6 14 14 N 1.28011 * 119.99687 * 179.97438 * 2 1 3 15 15 N 1.40096 * 120.00633 * 0.02562 * 14 2 1 16 16 C 1.34775 * 120.00515 * 180.02562 * 15 14 2 17 17 O 1.21301 * 119.99851 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00203 * 179.97438 * 16 15 14 19 19 C 1.54894 * 110.48422 * 63.24037 * 18 16 15 20 20 C 1.55238 * 102.58338 * 156.67616 * 19 18 16 21 21 C 1.54266 * 104.23333 * 322.08174 * 20 19 18 22 22 C 1.53869 * 106.59800 * 23.61579 * 21 20 19 23 23 H 1.08991 * 109.47700 * 270.00178 * 1 2 3 24 24 H 1.09005 * 109.47257 * 30.00748 * 1 2 3 25 25 H 1.09007 * 109.46832 * 149.99976 * 1 2 3 26 26 H 1.09004 * 109.46957 * 54.99337 * 3 2 1 27 27 H 1.09000 * 109.47062 * 174.99708 * 3 2 1 28 28 H 1.09004 * 109.46808 * 299.99488 * 4 3 2 29 29 H 1.09000 * 109.47438 * 59.99998 * 4 3 2 30 30 H 1.09004 * 109.46773 * 299.99821 * 5 4 3 31 31 H 1.09000 * 109.47277 * 59.99646 * 5 4 3 32 32 H 0.97001 * 120.00188 * 179.97438 * 9 8 6 33 33 H 0.97005 * 119.99225 * 0.02562 * 15 14 2 34 34 H 1.09002 * 110.43350 * 300.69816 * 18 16 15 35 35 H 1.08996 * 110.75388 * 275.05970 * 19 18 16 36 36 H 1.08993 * 110.76071 * 38.44196 * 19 18 16 37 37 H 1.09005 * 110.46917 * 203.39204 * 20 19 18 38 38 H 1.09007 * 110.58541 * 80.83124 * 20 19 18 39 39 H 1.08999 * 110.03060 * 264.32313 * 21 20 19 40 40 H 1.09006 * 110.06829 * 142.91691 * 21 20 19 41 41 H 1.09001 * 110.02983 * 240.71432 * 22 21 20 42 42 H 1.08995 * 110.03881 * 119.28625 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9875 2.0515 -1.3074 5 6 2.7530 3.3763 -1.3077 6 6 2.4837 4.1118 -2.5951 7 1 1.8320 3.6776 -3.3389 8 6 3.0691 5.3390 -2.8234 9 7 3.8631 5.8675 -1.9178 10 14 2.7359 6.2505 -4.4195 11 1 1.2805 6.5191 -4.5415 12 1 3.4787 7.5363 -4.4198 13 1 3.1838 5.4203 -5.5665 14 7 2.1470 -1.1086 0.0005 15 7 1.4466 -2.3219 0.0005 16 6 2.1204 -3.4892 0.0015 17 8 3.3334 -3.4892 0.0020 18 6 1.3669 -4.7942 0.0021 19 6 0.5306 -4.9379 -1.2937 20 6 0.3500 -6.4752 -1.4110 21 6 1.7013 -7.0528 -0.9417 22 6 2.3478 -5.9840 -0.0432 23 1 -0.3634 0.0000 1.0275 24 1 -0.3634 0.8899 -0.5140 25 1 -0.3633 -0.8901 -0.5139 26 1 1.9316 1.9145 0.8418 27 1 3.3287 1.1078 0.0896 28 1 2.3164 1.4421 -2.1492 29 1 0.9193 2.2488 -1.3970 30 1 2.4246 3.9859 -0.4658 31 1 3.8212 3.1787 -1.2183 32 1 4.2753 6.7307 -2.0786 33 1 0.4765 -2.3219 -0.0003 34 1 0.7247 -4.8625 0.8802 35 1 -0.4333 -4.4401 -1.1884 36 1 1.0772 -4.5465 -2.1516 37 1 0.1528 -6.7581 -2.4451 38 1 -0.4568 -6.8169 -0.7625 39 1 2.3402 -7.2541 -1.8016 40 1 1.5395 -7.9694 -0.3743 41 1 3.3006 -5.6665 -0.4670 42 1 2.4992 -6.3815 0.9604 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841617604.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:21 Heat of formation + Delta-G solvation = -34.407791 kcal Electronic energy + Delta-G solvation = -19502.721636 eV Core-core repulsion = 16482.244585 eV Total energy + Delta-G solvation = -3020.477051 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.19035 -38.06313 -36.97329 -34.66742 -32.96985 -31.39584 -29.69645 -29.00598 -28.23092 -27.23816 -23.85651 -22.39141 -20.89732 -20.34927 -19.96909 -19.22793 -17.60974 -16.49634 -16.10893 -15.96407 -15.32593 -15.02440 -14.52396 -14.25240 -13.83549 -13.75159 -13.71814 -13.44258 -12.45810 -12.28719 -12.05965 -11.78002 -11.71398 -11.55320 -11.50579 -11.45703 -11.31702 -11.15680 -10.80155 -10.74345 -10.68987 -10.56362 -10.03733 -9.83948 -9.66468 -9.35682 -9.11911 -8.57556 -8.32748 -5.98088 -4.00529 1.92215 2.55135 2.84955 3.34406 3.39050 3.41288 4.08646 4.17283 4.36484 4.47174 4.68074 4.77876 4.95877 4.96692 5.09300 5.12825 5.13234 5.18066 5.29059 5.35675 5.37712 5.43126 5.58559 5.72434 5.79804 5.84315 5.87172 5.94960 6.00466 6.03310 6.08933 6.46200 6.68555 6.83565 7.09554 7.14583 7.64017 7.68953 7.83769 8.01872 8.43726 8.48022 9.06257 9.63320 11.13199 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032858 B = 0.002807 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.954534 B = 9972.723155 C =10150.968530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 C -0.066 4.066 4 C -0.102 4.102 5 C 0.021 3.979 6 C -0.521 4.521 7 H 0.054 0.946 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 N -0.252 5.252 15 N -0.590 5.590 16 C 0.533 3.467 17 O -0.507 6.507 18 C -0.109 4.109 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.112 4.112 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.060 0.940 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.261 0.739 33 H 0.381 0.619 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.098 -22.938 4.970 25.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.077 4.077 3 C -0.106 4.106 4 C -0.141 4.141 5 C -0.016 4.016 6 C -0.560 4.560 7 H 0.072 0.928 8 C -0.145 4.145 9 N -0.534 5.534 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.203 1.203 14 N -0.056 5.056 15 N -0.333 5.333 16 C 0.320 3.680 17 O -0.379 6.379 18 C -0.132 4.132 19 C -0.155 4.155 20 C -0.160 4.160 21 C -0.163 4.163 22 C -0.150 4.150 23 H 0.100 0.900 24 H 0.112 0.888 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.220 0.780 34 H 0.120 0.880 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.244 -23.367 5.018 25.625 hybrid contribution -1.552 0.850 -0.837 1.958 sum -10.797 -22.517 4.181 25.319 Atomic orbital electron populations 1.21407 0.93309 1.04068 1.03328 1.25484 0.94414 0.94405 0.93424 1.20705 1.00068 0.88716 1.01088 1.21634 1.00631 0.98366 0.93493 1.19105 0.95441 0.89945 0.97104 1.21205 1.28468 1.03344 1.02951 0.92785 1.25020 0.95196 0.97567 0.96669 1.69953 1.31179 1.18022 1.34284 0.86668 0.78287 0.79033 0.84057 1.20281 1.21299 1.20270 1.74683 1.24285 0.91081 1.15598 1.47077 1.08335 1.03644 1.74210 1.20483 0.88289 0.83603 0.75660 1.90706 1.13896 1.86850 1.46495 1.22201 0.98262 0.92053 1.00704 1.22601 0.99331 0.97276 0.96317 1.22402 0.97616 0.94388 1.01589 1.22153 0.96394 0.98199 0.99518 1.22085 0.99190 0.93050 1.00683 0.90009 0.88805 0.92125 0.89702 0.90049 0.93127 0.92984 0.96382 0.96330 0.92937 0.78025 0.87991 0.90842 0.90642 0.91239 0.91296 0.91510 0.91594 0.89577 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.46 36.01 0.34 -1.37 16 2 C 0.12 1.71 6.55 -78.91 -0.52 1.19 16 3 C -0.07 -1.10 5.60 -27.88 -0.16 -1.26 16 4 C -0.10 -2.03 5.03 -26.73 -0.13 -2.16 16 5 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 6 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 7 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.93 13.29 55.43 0.74 -26.20 16 10 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 N -0.25 -4.19 10.93 35.60 0.39 -3.80 16 15 N -0.59 -7.78 6.06 31.22 0.19 -7.59 16 16 C 0.53 7.32 7.26 -10.99 -0.08 7.24 16 17 O -0.51 -9.35 15.78 5.54 0.09 -9.26 16 18 C -0.11 -0.97 3.24 -90.11 -0.29 -1.27 16 19 C -0.12 -0.86 6.32 -24.55 -0.16 -1.01 16 20 C -0.12 -0.74 6.84 -24.88 -0.17 -0.91 16 21 C -0.12 -0.86 6.80 -25.62 -0.17 -1.03 16 22 C -0.11 -1.01 6.17 -25.62 -0.16 -1.17 16 23 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 24 H 0.09 1.00 6.91 -51.93 -0.36 0.64 16 25 H 0.06 0.54 6.31 -51.92 -0.33 0.21 16 26 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.08 1.46 8.11 -51.93 -0.42 1.04 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 0.95 7.01 -51.93 -0.36 0.59 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.38 3.64 6.39 -182.60 -1.17 2.47 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 0.99 6.88 -51.93 -0.36 0.63 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 343.13 15.07 5.17 5.17 Total: -1.00 -34.07 343.13 -8.52 -42.59 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -8.03 Total: -2.75 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -2.05 Total: -14.81 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 1.31 Total: -37.59 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.07 -8.52 -42.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841617604.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.187 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds