Wall clock time and date at job start Mon Mar 30 2020 00:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50696 * 119.99991 * 2 1 4 4 C 1.53005 * 109.46930 * 294.99941 * 3 2 1 5 5 C 1.53004 * 109.46914 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46921 * 180.02562 * 5 4 3 7 7 H 1.07998 * 120.00128 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99793 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00049 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00063 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46948 * 60.00429 * 10 8 6 12 12 H 1.48499 * 109.47473 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47550 * 300.00608 * 10 8 6 14 14 N 1.28011 * 119.99687 * 179.97438 * 2 1 3 15 15 N 1.40096 * 120.00633 * 0.02562 * 14 2 1 16 16 C 1.34775 * 120.00515 * 180.02562 * 15 14 2 17 17 O 1.21301 * 119.99851 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00203 * 179.97438 * 16 15 14 19 19 C 1.54894 * 110.48422 * 63.24037 * 18 16 15 20 20 C 1.55238 * 102.58338 * 156.67616 * 19 18 16 21 21 C 1.54266 * 104.23333 * 322.08174 * 20 19 18 22 22 C 1.53869 * 106.59800 * 23.61579 * 21 20 19 23 23 H 1.08991 * 109.47700 * 270.00178 * 1 2 3 24 24 H 1.09005 * 109.47257 * 30.00748 * 1 2 3 25 25 H 1.09007 * 109.46832 * 149.99976 * 1 2 3 26 26 H 1.09004 * 109.46957 * 54.99337 * 3 2 1 27 27 H 1.09000 * 109.47062 * 174.99708 * 3 2 1 28 28 H 1.09004 * 109.46808 * 299.99488 * 4 3 2 29 29 H 1.09000 * 109.47438 * 59.99998 * 4 3 2 30 30 H 1.09004 * 109.46773 * 299.99821 * 5 4 3 31 31 H 1.09000 * 109.47277 * 59.99646 * 5 4 3 32 32 H 0.97001 * 120.00188 * 179.97438 * 9 8 6 33 33 H 0.97005 * 119.99225 * 0.02562 * 15 14 2 34 34 H 1.09002 * 110.43350 * 300.69816 * 18 16 15 35 35 H 1.08996 * 110.75388 * 275.05970 * 19 18 16 36 36 H 1.08993 * 110.76071 * 38.44196 * 19 18 16 37 37 H 1.09005 * 110.46917 * 203.39204 * 20 19 18 38 38 H 1.09007 * 110.58541 * 80.83124 * 20 19 18 39 39 H 1.08999 * 110.03060 * 264.32313 * 21 20 19 40 40 H 1.09006 * 110.06829 * 142.91691 * 21 20 19 41 41 H 1.09001 * 110.02983 * 240.71432 * 22 21 20 42 42 H 1.08995 * 110.03881 * 119.28625 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 1.9875 2.0515 -1.3074 5 6 2.7530 3.3763 -1.3077 6 6 2.4837 4.1118 -2.5951 7 1 1.8320 3.6776 -3.3389 8 6 3.0691 5.3390 -2.8234 9 7 3.8631 5.8675 -1.9178 10 14 2.7359 6.2505 -4.4195 11 1 1.2805 6.5191 -4.5415 12 1 3.4787 7.5363 -4.4198 13 1 3.1838 5.4203 -5.5665 14 7 2.1470 -1.1086 0.0005 15 7 1.4466 -2.3219 0.0005 16 6 2.1204 -3.4892 0.0015 17 8 3.3334 -3.4892 0.0020 18 6 1.3669 -4.7942 0.0021 19 6 0.5306 -4.9379 -1.2937 20 6 0.3500 -6.4752 -1.4110 21 6 1.7013 -7.0528 -0.9417 22 6 2.3478 -5.9840 -0.0432 23 1 -0.3634 0.0000 1.0275 24 1 -0.3634 0.8899 -0.5140 25 1 -0.3633 -0.8901 -0.5139 26 1 1.9316 1.9145 0.8418 27 1 3.3287 1.1078 0.0896 28 1 2.3164 1.4421 -2.1492 29 1 0.9193 2.2488 -1.3970 30 1 2.4246 3.9859 -0.4658 31 1 3.8212 3.1787 -1.2183 32 1 4.2753 6.7307 -2.0786 33 1 0.4765 -2.3219 -0.0003 34 1 0.7247 -4.8625 0.8802 35 1 -0.4333 -4.4401 -1.1884 36 1 1.0772 -4.5465 -2.1516 37 1 0.1528 -6.7581 -2.4451 38 1 -0.4568 -6.8169 -0.7625 39 1 2.3402 -7.2541 -1.8016 40 1 1.5395 -7.9694 -0.3743 41 1 3.3006 -5.6665 -0.4670 42 1 2.4992 -6.3815 0.9604 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841617604.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:20 Heat of formation + Delta-G solvation = -55.739123 kcal Electronic energy + Delta-G solvation = -19503.646632 eV Core-core repulsion = 16482.244585 eV Total energy + Delta-G solvation = -3021.402047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.18588 -39.08885 -37.89861 -36.30520 -34.68857 -32.97691 -30.61657 -29.61713 -29.10888 -28.90550 -25.63088 -23.44406 -22.13539 -21.41247 -20.96032 -20.27926 -18.66903 -18.27469 -17.42323 -16.75261 -16.51798 -16.27038 -15.94155 -15.61975 -15.03886 -14.92750 -14.43832 -14.33728 -14.14488 -13.67563 -13.26400 -13.08575 -12.85712 -12.76745 -12.59030 -12.42754 -12.36245 -12.26076 -12.09981 -12.02312 -11.75354 -11.50018 -11.40685 -11.31889 -11.19968 -11.07107 -10.81893 -10.52021 -9.76192 -8.17483 -6.28321 0.80149 1.41329 1.44460 1.52064 1.55318 1.79302 2.42991 3.15807 3.35667 3.53618 3.60791 3.72482 3.93660 4.16251 4.19631 4.38179 4.42522 4.48513 4.53271 4.53968 4.55164 4.63346 4.69975 4.76413 4.91580 4.97141 5.08125 5.09037 5.18325 5.21054 5.22498 5.26624 5.31508 5.35097 5.47091 5.55467 5.78728 5.89220 6.15161 6.27447 6.57660 6.89043 7.40675 7.45811 8.94150 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.032858 B = 0.002807 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.954534 B = 9972.723155 C =10150.968530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.123 3.877 3 C -0.061 4.061 4 C -0.086 4.086 5 C 0.022 3.978 6 C -0.543 4.543 7 H 0.061 0.939 8 C -0.002 4.002 9 N -0.934 5.934 10 Si 0.963 3.037 11 H -0.262 1.262 12 H -0.285 1.285 13 H -0.271 1.271 14 N -0.303 5.303 15 N -0.578 5.578 16 C 0.527 3.473 17 O -0.566 6.566 18 C -0.100 4.100 19 C -0.116 4.116 20 C -0.116 4.116 21 C -0.123 4.123 22 C -0.116 4.116 23 H 0.107 0.893 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.102 0.898 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.003 0.997 31 H -0.015 1.015 32 H 0.263 0.737 33 H 0.401 0.599 34 H 0.135 0.865 35 H 0.099 0.901 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.389 -24.133 4.548 28.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.070 4.070 3 C -0.101 4.101 4 C -0.124 4.124 5 C -0.015 4.015 6 C -0.581 4.581 7 H 0.080 0.920 8 C -0.200 4.200 9 N -0.574 5.574 10 Si 0.788 3.212 11 H -0.187 1.187 12 H -0.210 1.210 13 H -0.196 1.196 14 N -0.108 5.108 15 N -0.322 5.322 16 C 0.316 3.684 17 O -0.442 6.442 18 C -0.122 4.122 19 C -0.154 4.154 20 C -0.154 4.154 21 C -0.161 4.161 22 C -0.155 4.155 23 H 0.125 0.875 24 H 0.115 0.885 25 H 0.099 0.901 26 H 0.120 0.880 27 H 0.076 0.924 28 H 0.057 0.943 29 H 0.092 0.908 30 H 0.021 0.979 31 H 0.004 0.996 32 H 0.072 0.928 33 H 0.243 0.757 34 H 0.153 0.847 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.069 0.931 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.587 -24.566 4.593 27.983 hybrid contribution -0.478 1.218 -0.665 1.468 sum -13.065 -23.348 3.927 27.041 Atomic orbital electron populations 1.21486 0.89777 1.05210 1.05274 1.25368 0.96468 0.92791 0.92376 1.20510 0.99275 0.90296 1.00029 1.21361 1.00839 0.95471 0.94776 1.19027 0.94186 0.92531 0.95757 1.21691 1.28501 1.03882 1.04006 0.92048 1.25984 0.94875 0.98677 1.00437 1.70093 1.32280 1.18532 1.36528 0.85526 0.78830 0.77501 0.79345 1.18707 1.20999 1.19585 1.74588 1.26721 0.92654 1.16803 1.46953 1.09281 1.02451 1.73511 1.21518 0.87978 0.84957 0.73986 1.90680 1.16616 1.87702 1.49246 1.22312 0.98158 0.88741 1.03032 1.22645 0.99760 0.98640 0.94329 1.22410 0.97441 0.93022 1.02504 1.22154 0.96760 0.98145 0.99007 1.22107 0.97992 0.93957 1.01404 0.87500 0.88537 0.90056 0.88023 0.92423 0.94272 0.90802 0.97900 0.99629 0.92825 0.75663 0.84728 0.88256 0.92830 0.90601 0.89172 0.92298 0.89913 0.93083 0.90491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.46 71.24 0.67 -2.15 16 2 C 0.12 3.47 6.55 46.53 0.30 3.77 16 3 C -0.06 -2.06 5.60 29.85 0.17 -1.89 16 4 C -0.09 -3.40 5.03 30.60 0.15 -3.24 16 5 C 0.02 1.16 4.97 29.85 0.15 1.31 16 6 C -0.54 -30.82 9.11 25.60 0.23 -30.59 16 7 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 8 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 9 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 10 Si 0.96 44.33 29.54 68.60 2.03 46.36 16 11 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 14 N -0.30 -9.99 10.93 -41.20 -0.45 -10.44 16 15 N -0.58 -14.54 6.06 -173.52 -1.05 -15.59 16 16 C 0.53 14.37 7.26 87.66 0.64 15.00 16 17 O -0.57 -21.88 15.78 -3.09 -0.05 -21.93 16 18 C -0.10 -1.60 3.24 -10.46 -0.03 -1.64 16 19 C -0.12 -1.40 6.32 32.01 0.20 -1.20 16 20 C -0.12 -1.05 6.84 31.79 0.22 -0.83 16 21 C -0.12 -1.48 6.80 31.32 0.21 -1.27 16 22 C -0.12 -2.03 6.17 31.32 0.19 -1.84 16 23 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.10 1.72 6.91 -2.38 -0.02 1.71 16 25 H 0.08 1.12 6.31 -2.38 -0.02 1.10 16 26 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 27 H 0.06 2.18 8.11 -2.39 -0.02 2.16 16 28 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.07 2.60 7.01 -2.39 -0.02 2.58 16 30 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 31 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 32 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 33 H 0.40 6.51 6.39 -213.32 -1.36 5.15 16 34 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.05 0.89 8.05 -2.39 -0.02 0.87 16 37 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 38 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 41 H 0.05 1.26 6.88 -2.39 -0.02 1.24 16 42 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -77.52 343.13 3.96 -73.56 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -0.37 Total: 9.30 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 3.57 Total: -24.23 kcal Atomic # 7 Polarization: -81.84 SS G_CDS: -1.22 Total: -83.06 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.05 Total: -21.93 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -77.52 3.96 -73.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841617604.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.822 kcal (2) G-P(sol) polarization free energy of solvation -77.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds