Wall clock time and date at job start Mon Mar 30 2020 00:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46906 * 109.47082 * 2 1 4 4 C 1.46901 * 110.99875 * 201.64375 * 3 2 1 5 5 C 1.50693 * 109.47032 * 66.04286 * 4 3 2 6 6 H 1.07998 * 120.00539 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.99991 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99802 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00122 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47019 * 89.99876 * 9 7 5 11 11 H 1.48491 * 109.46950 * 209.99974 * 9 7 5 12 12 H 1.48504 * 109.46841 * 329.99892 * 9 7 5 13 13 C 1.46900 * 111.00089 * 77.68861 * 3 2 1 14 14 N 1.46504 * 109.47072 * 278.00157 * 13 3 2 15 15 C 1.34791 * 134.84680 * 104.90906 * 14 13 3 16 16 O 1.21273 * 131.84261 * 0.04286 * 15 14 13 17 17 C 1.50713 * 96.32368 * 180.02562 * 15 14 13 18 18 C 1.45661 * 134.84870 * 284.93476 * 14 13 3 19 19 C 1.54306 * 115.05976 * 61.50814 * 18 14 13 20 20 C 1.54997 * 102.69230 * 269.24334 * 19 18 14 21 21 C 1.54315 * 104.28121 * 322.70360 * 20 19 18 22 22 C 1.53668 * 115.45599 * 299.00617 * 18 14 13 23 23 H 1.08996 * 109.47064 * 52.07106 * 1 2 3 24 24 H 1.09000 * 109.47250 * 172.07142 * 1 2 3 25 25 H 1.09002 * 109.46783 * 292.06936 * 1 2 3 26 26 H 1.08993 * 109.46966 * 239.99746 * 2 1 3 27 27 H 1.09001 * 109.47304 * 119.99669 * 2 1 3 28 28 H 1.08991 * 109.46808 * 186.04469 * 4 3 2 29 29 H 1.09001 * 109.46647 * 306.04556 * 4 3 2 30 30 H 0.96995 * 120.00045 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47025 * 158.00281 * 13 3 2 32 32 H 1.08998 * 109.46813 * 37.99838 * 13 3 2 33 33 H 1.09007 * 114.43004 * 246.69498 * 17 15 14 34 34 H 1.08999 * 114.43848 * 113.31239 * 17 15 14 35 35 H 1.08998 * 110.76315 * 27.54433 * 19 18 14 36 36 H 1.09007 * 110.76279 * 150.94247 * 19 18 14 37 37 H 1.09002 * 110.47060 * 204.00530 * 20 19 18 38 38 H 1.08998 * 110.47479 * 81.40542 * 20 19 18 39 39 H 1.09001 * 110.03324 * 264.21597 * 21 20 19 40 40 H 1.09000 * 110.07622 * 142.80209 * 21 20 19 41 41 H 1.09002 * 110.06204 * 224.02238 * 22 18 14 42 42 H 1.08990 * 110.06727 * 345.49025 * 22 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3970 1.4564 -0.5058 5 6 3.4181 1.0686 -1.9619 6 1 2.5002 0.7968 -2.4617 7 6 4.6093 1.0619 -2.6564 8 7 5.7270 1.3935 -2.0479 9 14 4.6354 0.5819 -4.4615 10 1 4.4406 1.7929 -5.2985 11 1 5.9428 -0.0413 -4.7890 12 1 3.5433 -0.3875 -4.7316 13 6 1.9195 1.9789 1.3399 14 7 0.5526 2.4574 1.5610 15 6 -0.5031 2.0214 2.2768 16 8 -0.6513 1.0532 2.9919 17 6 -1.4377 3.1394 1.8920 18 6 -0.2237 3.5993 1.0971 19 6 -0.4332 3.6703 -0.4300 20 6 0.7806 4.5109 -0.9016 21 6 0.9685 5.5649 0.2098 22 6 0.3336 4.9780 1.4845 23 1 -0.3633 0.6317 -0.8106 24 1 -0.3634 -1.0178 -0.1418 25 1 -0.3633 0.3861 0.9524 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.7723 2.4737 -0.3953 29 1 4.0283 0.7725 0.0615 30 1 6.5649 1.3892 -2.5365 31 1 2.6144 2.8148 1.4197 32 1 2.1671 1.2275 2.0897 33 1 -1.7141 3.7991 2.7145 34 1 -2.2853 2.8285 1.2812 35 1 -0.4074 2.6735 -0.8703 36 1 -1.3693 4.1753 -0.6686 37 1 0.5622 4.9954 -1.8533 38 1 1.6684 3.8843 -0.9867 39 1 0.4650 6.4916 -0.0654 40 1 2.0300 5.7512 0.3732 41 1 -0.4733 5.6234 1.8316 42 1 1.0880 4.8709 2.2638 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844689528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:30 Heat of formation + Delta-G solvation = -0.643088 kcal Electronic energy + Delta-G solvation = -21932.464435 eV Core-core repulsion = 18913.451531 eV Total energy + Delta-G solvation = -3019.012904 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.28283 -37.33041 -36.77771 -34.55953 -32.69459 -30.64170 -29.63816 -28.57916 -26.74909 -25.83170 -23.90720 -22.48219 -20.57372 -20.27363 -20.13010 -17.97869 -16.81005 -16.44605 -15.98228 -15.75173 -14.88862 -14.72213 -14.19093 -14.11141 -13.99212 -13.44556 -13.10893 -12.81261 -12.62239 -12.29526 -12.18914 -11.63773 -11.24005 -11.20189 -11.14000 -11.03871 -10.95499 -10.79319 -10.68147 -10.60684 -10.52698 -10.13823 -10.08120 -9.94164 -9.59814 -9.30749 -8.55364 -8.43466 -7.39256 -6.08885 -4.10235 2.73224 3.25242 3.28220 3.34857 3.38492 4.03913 4.37679 4.55996 4.62849 4.88522 4.94668 5.26771 5.27573 5.43445 5.48678 5.58260 5.64317 5.71383 5.77440 5.82128 5.87084 5.94776 5.99815 6.04781 6.08267 6.15484 6.21938 6.44058 6.46228 6.52465 6.72689 6.81898 6.83527 6.93521 7.06181 7.22334 7.29522 7.74274 7.99007 8.11318 8.39827 8.54547 8.97447 9.54336 11.01668 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021431 B = 0.006501 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.176058 B = 4305.892321 C = 4903.873064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 N -0.543 5.543 4 C 0.199 3.801 5 C -0.505 4.505 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.300 3.700 14 N -0.595 5.595 15 C 0.517 3.483 16 O -0.531 6.531 17 C -0.167 4.167 18 C 0.151 3.849 19 C -0.117 4.117 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.121 4.121 23 H 0.056 0.944 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.085 0.915 27 H 0.018 0.982 28 H 0.031 0.969 29 H -0.008 1.008 30 H 0.262 0.738 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.866 7.457 5.318 14.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.068 4.068 3 N -0.269 5.269 4 C 0.074 3.926 5 C -0.544 4.544 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.199 1.199 13 C 0.090 3.910 14 N -0.330 5.330 15 C 0.304 3.696 16 O -0.406 6.406 17 C -0.207 4.207 18 C 0.065 3.935 19 C -0.155 4.155 20 C -0.160 4.160 21 C -0.160 4.160 22 C -0.160 4.160 23 H 0.075 0.925 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.037 0.963 28 H 0.049 0.951 29 H 0.010 0.990 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.757 7.135 5.321 14.746 hybrid contribution 0.827 -0.653 -0.563 1.194 sum -10.930 6.482 4.759 13.569 Atomic orbital electron populations 1.22014 0.96715 1.00205 1.01903 1.21996 0.94429 0.89603 1.00781 1.61830 1.26736 1.17799 1.20580 1.19677 0.80803 0.96819 0.95256 1.21100 0.93532 1.45192 0.94564 0.91799 1.24968 0.95510 0.95507 0.98471 1.69946 0.98487 1.48729 1.36544 0.86515 0.77278 0.78691 0.85037 1.20644 1.21352 1.19882 1.21731 0.80021 0.97569 0.91634 1.50215 1.12090 1.24776 1.45964 1.21932 0.83778 0.85204 0.78714 1.90685 1.80391 1.30392 1.39181 1.23409 0.98057 0.97895 1.01386 1.21740 0.87935 0.87811 0.95969 1.22603 0.98135 1.02006 0.92797 1.22373 0.99847 0.96877 0.96942 1.22137 1.00563 0.98441 0.94824 1.22278 1.00505 0.94611 0.98573 0.92527 0.93902 0.92750 0.89688 0.96335 0.95112 0.99005 0.92883 0.89961 0.92911 0.86844 0.86550 0.89647 0.91316 0.92248 0.89052 0.92293 0.91978 0.90755 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.60 37.16 0.36 -2.30 16 2 C 0.06 1.20 5.53 -3.82 -0.02 1.18 16 3 N -0.54 -10.94 4.37 -239.98 -1.05 -11.99 16 4 C 0.20 4.85 4.67 -4.98 -0.02 4.82 16 5 C -0.51 -13.44 8.21 -34.44 -0.28 -13.72 16 6 H 0.06 1.70 7.34 -52.49 -0.39 1.32 16 7 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -25.76 13.29 55.43 0.74 -25.03 16 9 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.30 5.35 6.67 -63.31 -0.42 4.93 16 14 N -0.59 -9.22 2.56 -191.56 -0.49 -9.71 16 15 C 0.52 8.15 7.04 -25.14 -0.18 7.97 16 16 O -0.53 -10.31 17.08 5.56 0.10 -10.22 16 17 C -0.17 -1.84 7.84 -28.27 -0.22 -2.06 16 18 C 0.15 1.89 1.29 -145.81 -0.19 1.70 16 19 C -0.12 -1.51 6.32 -24.99 -0.16 -1.67 16 20 C -0.12 -1.73 6.84 -24.99 -0.17 -1.90 16 21 C -0.12 -1.44 6.81 -25.51 -0.17 -1.61 16 22 C -0.12 -1.32 6.31 -25.85 -0.16 -1.49 16 23 H 0.06 0.99 6.80 -51.93 -0.35 0.63 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.98 3.74 -51.93 -0.19 0.78 16 26 H 0.08 1.85 6.58 -51.93 -0.34 1.50 16 27 H 0.02 0.37 7.62 -51.93 -0.40 -0.02 16 28 H 0.03 0.79 7.79 -51.93 -0.40 0.39 16 29 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 30 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.08 1.43 7.62 -51.93 -0.40 1.03 16 32 H 0.05 0.98 7.58 -51.93 -0.39 0.59 16 33 H 0.11 0.98 8.06 -51.93 -0.42 0.56 16 34 H 0.12 1.10 8.07 -51.93 -0.42 0.68 16 35 H 0.08 1.31 6.80 -51.93 -0.35 0.96 16 36 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 1.64 7.97 -51.93 -0.41 1.22 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.64 8.06 -51.93 -0.42 0.23 16 42 H 0.07 0.79 8.11 -51.93 -0.42 0.37 16 LS Contribution 330.03 15.07 4.97 4.97 Total: -1.00 -29.66 330.03 -9.48 -39.13 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.98 Total: -0.57 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -1.74 Total: -2.69 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: -0.80 Total: -46.73 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.10 Total: -10.22 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.66 -9.48 -39.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844689528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.489 kcal (2) G-P(sol) polarization free energy of solvation -29.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds