Wall clock time and date at job start Mon Mar 30 2020 00:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46906 * 109.47082 * 2 1 4 4 C 1.46901 * 110.99875 * 201.64375 * 3 2 1 5 5 C 1.50693 * 109.47032 * 66.04286 * 4 3 2 6 6 H 1.07998 * 120.00539 * 0.02562 * 5 4 3 7 7 C 1.37886 * 119.99991 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99802 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00122 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47019 * 89.99876 * 9 7 5 11 11 H 1.48491 * 109.46950 * 209.99974 * 9 7 5 12 12 H 1.48504 * 109.46841 * 329.99892 * 9 7 5 13 13 C 1.46900 * 111.00089 * 77.68861 * 3 2 1 14 14 N 1.46504 * 109.47072 * 278.00157 * 13 3 2 15 15 C 1.34791 * 134.84680 * 104.90906 * 14 13 3 16 16 O 1.21273 * 131.84261 * 0.04286 * 15 14 13 17 17 C 1.50713 * 96.32368 * 180.02562 * 15 14 13 18 18 C 1.45661 * 134.84870 * 284.93476 * 14 13 3 19 19 C 1.54306 * 115.05976 * 61.50814 * 18 14 13 20 20 C 1.54997 * 102.69230 * 269.24334 * 19 18 14 21 21 C 1.54315 * 104.28121 * 322.70360 * 20 19 18 22 22 C 1.53668 * 115.45599 * 299.00617 * 18 14 13 23 23 H 1.08996 * 109.47064 * 52.07106 * 1 2 3 24 24 H 1.09000 * 109.47250 * 172.07142 * 1 2 3 25 25 H 1.09002 * 109.46783 * 292.06936 * 1 2 3 26 26 H 1.08993 * 109.46966 * 239.99746 * 2 1 3 27 27 H 1.09001 * 109.47304 * 119.99669 * 2 1 3 28 28 H 1.08991 * 109.46808 * 186.04469 * 4 3 2 29 29 H 1.09001 * 109.46647 * 306.04556 * 4 3 2 30 30 H 0.96995 * 120.00045 * 180.02562 * 8 7 5 31 31 H 1.09001 * 109.47025 * 158.00281 * 13 3 2 32 32 H 1.08998 * 109.46813 * 37.99838 * 13 3 2 33 33 H 1.09007 * 114.43004 * 246.69498 * 17 15 14 34 34 H 1.08999 * 114.43848 * 113.31239 * 17 15 14 35 35 H 1.08998 * 110.76315 * 27.54433 * 19 18 14 36 36 H 1.09007 * 110.76279 * 150.94247 * 19 18 14 37 37 H 1.09002 * 110.47060 * 204.00530 * 20 19 18 38 38 H 1.08998 * 110.47479 * 81.40542 * 20 19 18 39 39 H 1.09001 * 110.03324 * 264.21597 * 21 20 19 40 40 H 1.09000 * 110.07622 * 142.80209 * 21 20 19 41 41 H 1.09002 * 110.06204 * 224.02238 * 22 18 14 42 42 H 1.08990 * 110.06727 * 345.49025 * 22 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3970 1.4564 -0.5058 5 6 3.4181 1.0686 -1.9619 6 1 2.5002 0.7968 -2.4617 7 6 4.6093 1.0619 -2.6564 8 7 5.7270 1.3935 -2.0479 9 14 4.6354 0.5819 -4.4615 10 1 4.4406 1.7929 -5.2985 11 1 5.9428 -0.0413 -4.7890 12 1 3.5433 -0.3875 -4.7316 13 6 1.9195 1.9789 1.3399 14 7 0.5526 2.4574 1.5610 15 6 -0.5031 2.0214 2.2768 16 8 -0.6513 1.0532 2.9919 17 6 -1.4377 3.1394 1.8920 18 6 -0.2237 3.5993 1.0971 19 6 -0.4332 3.6703 -0.4300 20 6 0.7806 4.5109 -0.9016 21 6 0.9685 5.5649 0.2098 22 6 0.3336 4.9780 1.4845 23 1 -0.3633 0.6317 -0.8106 24 1 -0.3634 -1.0178 -0.1418 25 1 -0.3633 0.3861 0.9524 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.7723 2.4737 -0.3953 29 1 4.0283 0.7725 0.0615 30 1 6.5649 1.3892 -2.5365 31 1 2.6144 2.8148 1.4197 32 1 2.1671 1.2275 2.0897 33 1 -1.7141 3.7991 2.7145 34 1 -2.2853 2.8285 1.2812 35 1 -0.4074 2.6735 -0.8703 36 1 -1.3693 4.1753 -0.6686 37 1 0.5622 4.9954 -1.8533 38 1 1.6684 3.8843 -0.9867 39 1 0.4650 6.4916 -0.0654 40 1 2.0300 5.7512 0.3732 41 1 -0.4733 5.6234 1.8316 42 1 1.0880 4.8709 2.2638 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844689528.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:29 Heat of formation + Delta-G solvation = -18.602510 kcal Electronic energy + Delta-G solvation = -21933.243214 eV Core-core repulsion = 18913.451531 eV Total energy + Delta-G solvation = -3019.791683 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.42175 -38.55508 -38.44914 -35.74203 -34.74695 -32.08489 -31.22587 -29.54711 -28.46872 -26.96314 -25.38341 -24.34137 -22.04802 -21.56534 -21.21147 -19.28299 -18.35319 -17.93715 -17.38544 -17.11741 -16.60506 -15.87976 -15.77352 -15.61678 -15.27595 -14.93475 -14.34137 -14.17539 -14.04597 -13.95793 -13.52663 -13.24017 -12.93362 -12.71102 -12.63750 -12.41682 -12.18452 -12.12604 -12.00824 -11.88310 -11.76832 -11.70087 -11.59828 -11.38675 -11.16488 -10.82760 -10.62692 -9.77864 -9.14025 -8.21088 -6.29985 1.40529 1.40914 1.50124 1.52810 2.02526 2.39871 2.97043 3.11548 3.25180 3.65779 3.67775 3.90600 4.03140 4.14243 4.31131 4.34179 4.48009 4.55142 4.62102 4.67804 4.70030 4.80701 4.87308 4.88560 5.01222 5.02134 5.05646 5.11024 5.16460 5.19491 5.26634 5.32722 5.42863 5.53743 5.62411 5.69791 5.81864 5.84158 6.04562 6.29204 6.53693 6.84603 7.24689 7.39394 8.89592 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021431 B = 0.006501 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.176058 B = 4305.892321 C = 4903.873064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.062 3.938 3 N -0.534 5.534 4 C 0.218 3.782 5 C -0.514 4.514 6 H 0.061 0.939 7 C 0.006 3.994 8 N -0.933 5.933 9 Si 0.964 3.036 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.306 3.694 14 N -0.603 5.603 15 C 0.503 3.497 16 O -0.575 6.575 17 C -0.135 4.135 18 C 0.146 3.854 19 C -0.111 4.111 20 C -0.126 4.126 21 C -0.118 4.118 22 C -0.115 4.115 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.009 0.991 28 H 0.011 0.989 29 H -0.040 1.040 30 H 0.264 0.736 31 H 0.080 0.920 32 H 0.039 0.961 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.113 0.887 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.660 8.973 4.909 17.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.066 4.066 3 N -0.260 5.260 4 C 0.092 3.908 5 C -0.552 4.552 6 H 0.079 0.921 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.789 3.211 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.095 3.905 14 N -0.338 5.338 15 C 0.292 3.708 16 O -0.454 6.454 17 C -0.174 4.174 18 C 0.061 3.939 19 C -0.149 4.149 20 C -0.164 4.164 21 C -0.155 4.155 22 C -0.153 4.153 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.028 0.972 28 H 0.029 0.971 29 H -0.022 1.022 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.076 0.924 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.063 0.937 41 H 0.131 0.869 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.584 8.679 4.912 17.668 hybrid contribution 1.710 -1.116 -0.401 2.081 sum -12.874 7.563 4.511 15.598 Atomic orbital electron populations 1.21873 0.94291 1.01254 1.01949 1.21973 0.96301 0.89071 0.99297 1.61814 1.23975 1.18076 1.22174 1.19283 0.82586 0.94554 0.94386 1.21340 0.93508 1.44892 0.95499 0.92052 1.25814 0.95090 0.95397 1.02947 1.70067 0.99093 1.49807 1.38353 0.85460 0.77389 0.78614 0.79633 1.19787 1.21032 1.19137 1.21498 0.82233 0.97000 0.89784 1.50330 1.11124 1.26084 1.46273 1.22980 0.84526 0.85607 0.77654 1.90658 1.81220 1.32548 1.40945 1.23517 0.97046 0.94994 1.01881 1.22020 0.88208 0.87570 0.96087 1.22581 0.99052 1.00574 0.92725 1.22300 0.98516 0.97188 0.98391 1.22110 1.00073 0.98825 0.94523 1.22295 1.01393 0.93985 0.97645 0.92122 0.92427 0.92813 0.91738 0.97236 0.97076 1.02186 0.92741 0.90187 0.94273 0.83184 0.84001 0.92399 0.87650 0.91741 0.93941 0.89626 0.93750 0.86863 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.60 71.98 0.69 -4.07 16 2 C 0.06 2.55 5.53 86.30 0.48 3.03 16 3 N -0.53 -22.57 4.37 -913.17 -3.99 -26.56 16 4 C 0.22 11.26 4.67 85.55 0.40 11.66 16 5 C -0.51 -28.30 8.21 25.60 0.21 -28.09 16 6 H 0.06 3.35 7.34 -2.91 -0.02 3.33 16 7 C 0.01 0.32 5.46 84.66 0.46 0.78 16 8 N -0.93 -55.14 13.29 21.45 0.28 -54.86 16 9 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 C 0.31 11.38 6.67 170.81 1.14 12.52 16 14 N -0.60 -18.34 2.56 -878.36 -2.25 -20.59 16 15 C 0.50 15.01 7.04 78.48 0.55 15.56 16 16 O -0.57 -21.98 17.08 -3.01 -0.05 -22.03 16 17 C -0.13 -2.35 7.84 29.59 0.23 -2.12 16 18 C 0.15 3.23 1.29 -5.01 -0.01 3.22 16 19 C -0.11 -2.59 6.32 31.72 0.20 -2.39 16 20 C -0.13 -3.45 6.84 31.72 0.22 -3.23 16 21 C -0.12 -2.54 6.81 31.39 0.21 -2.32 16 22 C -0.11 -2.13 6.31 31.16 0.20 -1.93 16 23 H 0.06 2.07 6.80 -2.39 -0.02 2.05 16 24 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.05 1.90 3.74 -2.39 -0.01 1.89 16 26 H 0.06 2.91 6.58 -2.39 -0.02 2.90 16 27 H 0.01 0.40 7.62 -2.39 -0.02 0.38 16 28 H 0.01 0.62 7.79 -2.39 -0.02 0.60 16 29 H -0.04 -2.26 8.12 -2.39 -0.02 -2.28 16 30 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.08 2.97 7.62 -2.39 -0.02 2.95 16 32 H 0.04 1.55 7.58 -2.39 -0.02 1.54 16 33 H 0.15 1.63 8.06 -2.38 -0.02 1.61 16 34 H 0.14 1.88 8.07 -2.39 -0.02 1.86 16 35 H 0.06 1.70 6.80 -2.39 -0.02 1.68 16 36 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.04 1.57 7.97 -2.39 -0.02 1.55 16 39 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.11 1.29 8.06 -2.39 -0.02 1.27 16 42 H 0.06 1.23 8.11 -2.39 -0.02 1.21 16 Total: -1.00 -67.78 330.03 1.99 -65.79 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.99 Total: 9.80 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 4.99 Total: 2.63 kcal Atomic # 7 Polarization: -96.05 SS G_CDS: -5.96 Total: -102.00 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.05 Total: -22.03 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -67.78 1.99 -65.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844689528.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.189 kcal (2) G-P(sol) polarization free energy of solvation -67.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds