Wall clock time and date at job start Mon Mar 30 2020 01:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32994 * 1 3 3 C 1.50697 * 120.00529 * 2 1 4 4 N 1.46902 * 109.47002 * 96.13425 * 3 2 1 5 5 C 1.46903 * 110.99560 * 170.00103 * 4 3 2 6 6 C 1.46893 * 111.00188 * 293.95699 * 4 3 2 7 7 C 1.47101 * 119.99477 * 180.02562 * 2 1 3 8 8 O 1.21619 * 119.99589 * 259.35279 * 7 2 1 9 9 N 1.34776 * 120.00352 * 79.35326 * 7 2 1 10 10 C 1.46927 * 120.63125 * 184.81466 * 9 7 2 11 11 C 1.52763 * 109.00689 * 233.58334 * 10 9 7 12 12 C 1.53040 * 109.38460 * 305.58632 * 11 10 9 13 13 C 1.53048 * 109.53514 * 61.24293 * 12 11 10 14 14 H 1.08997 * 109.50009 * 58.58414 * 13 12 11 15 15 C 1.50698 * 109.49569 * 178.68537 * 13 12 11 16 16 H 1.08003 * 120.00082 * 359.83498 * 15 13 12 17 17 C 1.37881 * 119.99783 * 179.83782 * 15 13 12 18 18 N 1.31514 * 119.99817 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99712 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47248 * 60.00206 * 19 17 15 21 21 H 1.48507 * 109.47046 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47230 * 299.99683 * 19 17 15 23 23 C 1.46925 * 120.62979 * 5.09320 * 9 7 2 24 24 H 1.07996 * 120.00528 * 179.97438 * 1 2 3 25 25 H 1.08007 * 119.99816 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.47526 * 216.13947 * 3 2 1 27 27 H 1.09003 * 109.46651 * 336.13685 * 3 2 1 28 28 H 1.08997 * 109.47111 * 60.00340 * 5 4 3 29 29 H 1.08999 * 109.46833 * 179.97438 * 5 4 3 30 30 H 1.08992 * 109.47166 * 300.00327 * 5 4 3 31 31 H 1.09003 * 109.47301 * 60.00155 * 6 4 3 32 32 H 1.09001 * 109.47519 * 180.02562 * 6 4 3 33 33 H 1.09006 * 109.47287 * 299.99807 * 6 4 3 34 34 H 1.09001 * 109.58525 * 353.41630 * 10 9 7 35 35 H 1.08993 * 109.58474 * 113.84317 * 10 9 7 36 36 H 1.09003 * 109.56170 * 185.54977 * 11 10 9 37 37 H 1.08999 * 109.38667 * 65.51837 * 11 10 9 38 38 H 1.08998 * 109.45914 * 301.22476 * 12 11 10 39 39 H 1.08995 * 109.46045 * 181.25990 * 12 11 10 40 40 H 0.97007 * 119.99219 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.58630 * 246.16030 * 23 9 7 42 42 H 1.09000 * 109.58551 * 6.44074 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0835 1.3050 0.0000 4 7 2.4566 1.6550 1.3771 5 6 3.3904 2.7888 1.3974 6 6 1.2659 1.9390 2.1891 7 6 2.0653 -1.2740 -0.0006 8 8 2.5378 -1.7038 1.0344 9 7 2.2155 -1.9650 -1.1479 10 6 2.8548 -3.2879 -1.1469 11 6 3.9972 -3.2891 -2.1611 12 6 3.4647 -2.8491 -3.5267 13 6 2.9084 -1.4269 -3.4250 14 1 3.6940 -0.7524 -3.0847 15 6 2.4137 -0.9825 -4.7773 16 1 2.4908 -1.6465 -5.6255 17 6 1.8626 0.2720 -4.9316 18 7 1.7683 1.0804 -3.8986 19 14 1.2501 0.8231 -6.6081 20 1 0.1814 -0.0977 -7.0719 21 1 0.7062 2.2014 -6.5078 22 1 2.3752 0.8038 -7.5771 23 6 1.7485 -1.4070 -2.4244 24 1 -0.5401 -0.9352 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 2.9839 1.2047 -0.6060 27 1 1.4513 2.0896 -0.4158 28 1 2.9204 3.6550 0.9318 29 1 3.6498 3.0274 2.4289 30 1 4.2935 2.5257 0.8468 31 1 0.6244 1.0580 2.2139 32 1 1.5706 2.1957 3.2036 33 1 0.7189 2.7745 1.7521 34 1 3.2494 -3.5022 -0.1538 35 1 2.1235 -4.0472 -1.4236 36 1 4.4145 -4.2931 -2.2396 37 1 4.7731 -2.5974 -1.8330 38 1 2.6722 -3.5272 -3.8431 39 1 4.2741 -2.8710 -4.2563 40 1 1.3810 1.9631 -4.0074 41 1 0.9251 -2.0099 -2.8073 42 1 1.4111 -0.3816 -2.2733 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855257425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:59 Heat of formation + Delta-G solvation = -16.751076 kcal Electronic energy + Delta-G solvation = -21587.162238 eV Core-core repulsion = 18567.450839 eV Total energy + Delta-G solvation = -3019.711399 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.54938 -37.40505 -36.46273 -33.25655 -33.17417 -31.54520 -29.77420 -27.40623 -26.69258 -25.19538 -24.76513 -22.49543 -21.73858 -20.99658 -19.31677 -17.58729 -16.52736 -16.00174 -15.48515 -15.06800 -14.93794 -14.65005 -14.44152 -13.94671 -13.70719 -13.41217 -12.92742 -12.73560 -12.48582 -12.19329 -12.12536 -11.88725 -11.80949 -11.50417 -11.37526 -11.04109 -10.98229 -10.87101 -10.56500 -10.40143 -10.23197 -9.94979 -9.37822 -9.22420 -9.04651 -8.76785 -8.51843 -8.02918 -7.73575 -6.13875 -4.18576 2.27318 3.23796 3.28940 3.29710 3.32876 3.86545 4.33748 4.37235 5.11914 5.22179 5.25799 5.37156 5.51889 5.59316 5.62421 5.67653 5.73338 5.80891 5.88134 6.03523 6.07308 6.09481 6.12135 6.17911 6.30905 6.39308 6.52604 6.64742 6.68827 6.83048 6.87418 6.93609 6.99836 7.25558 7.30342 7.34691 7.49806 7.74751 7.91217 8.17079 8.35902 8.83011 8.90518 9.46663 10.92696 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.007654 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.460671 B = 3657.151714 C = 4839.905303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C 0.107 3.893 4 N -0.540 5.540 5 C 0.028 3.972 6 C 0.024 3.976 7 C 0.556 3.444 8 O -0.554 6.554 9 N -0.603 5.603 10 C 0.113 3.887 11 C -0.133 4.133 12 C -0.111 4.111 13 C 0.038 3.962 14 H 0.030 0.970 15 C -0.514 4.514 16 H 0.058 0.942 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.108 3.892 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.051 0.949 28 H 0.023 0.977 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.021 0.979 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.262 0.738 41 H 0.043 0.957 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.367 0.249 6.662 6.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.115 4.115 3 C -0.020 4.020 4 N -0.263 5.263 5 C -0.120 4.120 6 C -0.124 4.124 7 C 0.344 3.656 8 O -0.433 6.433 9 N -0.335 5.335 10 C -0.010 4.010 11 C -0.171 4.171 12 C -0.149 4.149 13 C 0.019 3.981 14 H 0.048 0.952 15 C -0.553 4.553 16 H 0.076 0.924 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.721 3.279 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.013 4.013 24 H 0.118 0.882 25 H 0.125 0.875 26 H 0.107 0.893 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.932 -0.195 7.441 7.501 hybrid contribution -0.835 1.077 -1.487 2.017 sum -1.767 0.883 5.954 6.273 Atomic orbital electron populations 1.24124 0.94208 1.02123 0.98971 1.21272 0.95062 0.94391 1.00821 1.20926 1.00002 0.92368 0.88753 1.61907 1.15006 1.37717 1.11689 1.22345 0.96641 0.91362 1.01693 1.22404 0.92502 1.00145 0.97345 1.18487 0.79499 0.84263 0.83340 1.90718 1.49876 1.70333 1.32415 1.48541 1.58094 1.18176 1.08666 1.21379 0.94940 0.84477 1.00170 1.21859 0.97731 1.00535 0.96979 1.21627 0.99521 0.99460 0.94249 1.18974 0.93709 0.91055 0.94327 0.95195 1.21094 1.40277 0.99730 0.94150 0.92394 1.24974 0.95592 0.96478 0.96716 1.69818 1.45065 1.08421 1.29438 0.86642 0.79170 0.77658 0.84456 1.20269 1.21299 1.20296 1.22376 0.97893 1.00566 0.80477 0.88186 0.87510 0.89289 0.93108 0.95824 0.91670 0.91309 0.91036 0.91866 0.96057 0.90179 0.92453 0.92261 0.92218 0.93207 0.93045 0.92801 0.93883 0.86478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.52 12.50 28.91 0.36 -2.16 16 2 C -0.11 -2.10 2.67 -102.85 -0.28 -2.37 16 3 C 0.11 1.92 5.13 -4.98 -0.03 1.89 16 4 N -0.54 -8.82 5.01 -252.73 -1.27 -10.09 16 5 C 0.03 0.38 9.57 60.07 0.57 0.96 16 6 C 0.02 0.34 9.22 60.06 0.55 0.89 16 7 C 0.56 11.75 7.08 -12.67 -0.09 11.66 16 8 O -0.55 -12.94 16.52 5.26 0.09 -12.85 16 9 N -0.60 -12.42 2.98 -174.43 -0.52 -12.94 16 10 C 0.11 2.07 6.41 -3.93 -0.03 2.05 16 11 C -0.13 -2.34 6.06 -26.83 -0.16 -2.50 16 12 C -0.11 -2.21 5.11 -26.69 -0.14 -2.34 16 13 C 0.04 0.90 2.25 -91.65 -0.21 0.70 16 14 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 15 C -0.51 -13.10 8.56 -34.44 -0.29 -13.39 16 16 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 17 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 18 N -0.89 -22.86 11.39 55.43 0.63 -22.23 16 19 Si 0.89 20.02 29.54 -169.99 -5.02 14.99 16 20 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 C 0.11 2.39 5.25 -3.71 -0.02 2.37 16 24 H 0.10 1.55 8.05 -52.49 -0.42 1.13 16 25 H 0.11 1.50 8.01 -52.48 -0.42 1.08 16 26 H 0.09 1.79 8.06 -51.93 -0.42 1.37 16 27 H 0.05 0.88 7.97 -51.93 -0.41 0.47 16 28 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 30 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 31 H 0.07 1.03 6.46 -51.93 -0.34 0.70 16 32 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 33 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 1.48 6.99 -51.93 -0.36 1.11 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.12 2.75 4.36 -51.93 -0.23 2.52 16 LS Contribution 335.49 15.07 5.06 5.06 Total: -1.00 -28.08 335.49 -8.08 -36.16 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.21 Total: 2.62 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 0.16 Total: -0.72 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -1.15 Total: -45.26 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.09 Total: -12.85 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.08 -8.08 -36.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855257425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.411 kcal (2) G-P(sol) polarization free energy of solvation -28.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds