Wall clock time and date at job start Mon Mar 30 2020 01:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32994 * 1 3 3 C 1.50697 * 120.00529 * 2 1 4 4 N 1.46902 * 109.47002 * 96.13425 * 3 2 1 5 5 C 1.46903 * 110.99560 * 170.00103 * 4 3 2 6 6 C 1.46893 * 111.00188 * 293.95699 * 4 3 2 7 7 C 1.47101 * 119.99477 * 180.02562 * 2 1 3 8 8 O 1.21619 * 119.99589 * 259.35279 * 7 2 1 9 9 N 1.34776 * 120.00352 * 79.35326 * 7 2 1 10 10 C 1.46927 * 120.63125 * 184.81466 * 9 7 2 11 11 C 1.52763 * 109.00689 * 233.58334 * 10 9 7 12 12 C 1.53040 * 109.38460 * 305.58632 * 11 10 9 13 13 C 1.53048 * 109.53514 * 61.24293 * 12 11 10 14 14 H 1.08997 * 109.50009 * 58.58414 * 13 12 11 15 15 C 1.50698 * 109.49569 * 178.68537 * 13 12 11 16 16 H 1.08003 * 120.00082 * 359.83498 * 15 13 12 17 17 C 1.37881 * 119.99783 * 179.83782 * 15 13 12 18 18 N 1.31514 * 119.99817 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99712 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47248 * 60.00206 * 19 17 15 21 21 H 1.48507 * 109.47046 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47230 * 299.99683 * 19 17 15 23 23 C 1.46925 * 120.62979 * 5.09320 * 9 7 2 24 24 H 1.07996 * 120.00528 * 179.97438 * 1 2 3 25 25 H 1.08007 * 119.99816 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.47526 * 216.13947 * 3 2 1 27 27 H 1.09003 * 109.46651 * 336.13685 * 3 2 1 28 28 H 1.08997 * 109.47111 * 60.00340 * 5 4 3 29 29 H 1.08999 * 109.46833 * 179.97438 * 5 4 3 30 30 H 1.08992 * 109.47166 * 300.00327 * 5 4 3 31 31 H 1.09003 * 109.47301 * 60.00155 * 6 4 3 32 32 H 1.09001 * 109.47519 * 180.02562 * 6 4 3 33 33 H 1.09006 * 109.47287 * 299.99807 * 6 4 3 34 34 H 1.09001 * 109.58525 * 353.41630 * 10 9 7 35 35 H 1.08993 * 109.58474 * 113.84317 * 10 9 7 36 36 H 1.09003 * 109.56170 * 185.54977 * 11 10 9 37 37 H 1.08999 * 109.38667 * 65.51837 * 11 10 9 38 38 H 1.08998 * 109.45914 * 301.22476 * 12 11 10 39 39 H 1.08995 * 109.46045 * 181.25990 * 12 11 10 40 40 H 0.97007 * 119.99219 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.58630 * 246.16030 * 23 9 7 42 42 H 1.09000 * 109.58551 * 6.44074 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3299 0.0000 0.0000 3 6 2.0835 1.3050 0.0000 4 7 2.4566 1.6550 1.3771 5 6 3.3904 2.7888 1.3974 6 6 1.2659 1.9390 2.1891 7 6 2.0653 -1.2740 -0.0006 8 8 2.5378 -1.7038 1.0344 9 7 2.2155 -1.9650 -1.1479 10 6 2.8548 -3.2879 -1.1469 11 6 3.9972 -3.2891 -2.1611 12 6 3.4647 -2.8491 -3.5267 13 6 2.9084 -1.4269 -3.4250 14 1 3.6940 -0.7524 -3.0847 15 6 2.4137 -0.9825 -4.7773 16 1 2.4908 -1.6465 -5.6255 17 6 1.8626 0.2720 -4.9316 18 7 1.7683 1.0804 -3.8986 19 14 1.2501 0.8231 -6.6081 20 1 0.1814 -0.0977 -7.0719 21 1 0.7062 2.2014 -6.5078 22 1 2.3752 0.8038 -7.5771 23 6 1.7485 -1.4070 -2.4244 24 1 -0.5401 -0.9352 -0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 2.9839 1.2047 -0.6060 27 1 1.4513 2.0896 -0.4158 28 1 2.9204 3.6550 0.9318 29 1 3.6498 3.0274 2.4289 30 1 4.2935 2.5257 0.8468 31 1 0.6244 1.0580 2.2139 32 1 1.5706 2.1957 3.2036 33 1 0.7189 2.7745 1.7521 34 1 3.2494 -3.5022 -0.1538 35 1 2.1235 -4.0472 -1.4236 36 1 4.4145 -4.2931 -2.2396 37 1 4.7731 -2.5974 -1.8330 38 1 2.6722 -3.5272 -3.8431 39 1 4.2741 -2.8710 -4.2563 40 1 1.3810 1.9631 -4.0074 41 1 0.9251 -2.0099 -2.8073 42 1 1.4111 -0.3816 -2.2733 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855257425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:59 Heat of formation + Delta-G solvation = -33.626179 kcal Electronic energy + Delta-G solvation = -21587.893997 eV Core-core repulsion = 18567.450839 eV Total energy + Delta-G solvation = -3020.443158 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.15846 -38.78019 -38.06456 -35.03364 -34.68502 -33.14030 -31.51265 -28.53632 -27.94856 -27.01278 -26.44056 -24.02721 -23.09709 -22.55654 -20.93329 -19.18661 -18.36911 -17.61399 -17.03565 -16.53467 -16.38566 -16.19910 -15.86981 -15.36866 -15.22245 -14.90461 -14.58905 -14.39697 -14.01140 -13.68671 -13.48526 -13.27662 -13.18743 -12.82957 -12.75439 -12.65165 -12.58501 -12.27522 -12.22863 -12.21443 -11.82683 -11.64200 -11.13675 -10.89490 -10.72733 -10.49241 -10.22386 -9.43037 -9.23411 -8.07255 -6.19093 0.90781 1.46585 1.48298 1.54497 1.65165 2.30747 2.47580 3.16302 3.21527 3.65120 3.92222 4.10729 4.15652 4.25755 4.30905 4.36585 4.47918 4.58658 4.59965 4.70750 4.72110 4.76672 4.78065 4.84108 4.88892 4.96750 5.02621 5.06990 5.20990 5.25205 5.28729 5.34201 5.51157 5.60659 5.71322 5.88739 6.00890 6.03035 6.16277 6.33056 6.60618 6.88274 7.25265 7.48572 8.97365 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.007654 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.460671 B = 3657.151714 C = 4839.905303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.144 4.144 3 C 0.120 3.880 4 N -0.561 5.561 5 C 0.028 3.972 6 C 0.026 3.974 7 C 0.552 3.448 8 O -0.582 6.582 9 N -0.605 5.605 10 C 0.108 3.892 11 C -0.123 4.123 12 C -0.106 4.106 13 C 0.037 3.963 14 H -0.009 1.009 15 C -0.535 4.535 16 H 0.055 0.945 17 C 0.025 3.975 18 N -0.903 5.903 19 Si 0.949 3.051 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.278 1.278 23 C 0.123 3.877 24 H 0.108 0.892 25 H 0.131 0.869 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.032 0.968 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.043 0.957 38 H 0.058 0.942 39 H 0.051 0.949 40 H 0.263 0.737 41 H 0.041 0.959 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.376 0.079 6.639 7.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.147 4.147 3 C -0.008 4.008 4 N -0.286 5.286 5 C -0.120 4.120 6 C -0.121 4.121 7 C 0.342 3.658 8 O -0.464 6.464 9 N -0.337 5.337 10 C -0.015 4.015 11 C -0.161 4.161 12 C -0.143 4.143 13 C 0.017 3.983 14 H 0.009 0.991 15 C -0.573 4.573 16 H 0.074 0.926 17 C -0.176 4.176 18 N -0.542 5.542 19 Si 0.775 3.225 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.204 1.204 23 C 0.001 3.999 24 H 0.126 0.874 25 H 0.149 0.851 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.938 -0.374 7.415 7.673 hybrid contribution -0.513 1.134 -1.466 1.923 sum -2.451 0.760 5.949 6.479 Atomic orbital electron populations 1.24403 0.93324 1.03675 0.95601 1.21264 0.95937 0.93570 1.03955 1.20676 0.98321 0.92298 0.89457 1.61900 1.16508 1.39276 1.10871 1.22381 0.95766 0.90844 1.02961 1.22422 0.91633 1.00234 0.97861 1.18894 0.79186 0.84855 0.82911 1.90684 1.51241 1.71246 1.33213 1.48597 1.58020 1.18993 1.08041 1.21584 0.95623 0.83878 1.00370 1.21794 0.97012 1.02154 0.95179 1.21538 0.99722 0.97358 0.95732 1.18915 0.93088 0.92422 0.93827 0.99075 1.21359 1.40815 1.00203 0.94951 0.92646 1.25617 0.95756 0.96605 0.99605 1.69931 1.45052 1.08471 1.30698 0.85759 0.78586 0.77259 0.80869 1.19715 1.21066 1.20406 1.22030 0.97148 0.99923 0.80773 0.87398 0.85063 0.92710 0.92773 0.94901 0.89576 0.92486 0.91894 0.90162 0.94669 0.90304 0.90288 0.88515 0.93832 0.92291 0.92990 0.92777 0.94030 0.87809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 12.50 66.65 0.83 -3.25 16 2 C -0.14 -5.38 2.67 -18.70 -0.05 -5.43 16 3 C 0.12 4.38 5.13 85.56 0.44 4.82 16 4 N -0.56 -18.14 5.01 -953.49 -4.78 -22.91 16 5 C 0.03 0.75 9.57 127.69 1.22 1.98 16 6 C 0.03 0.68 9.22 127.69 1.18 1.86 16 7 C 0.55 23.51 7.08 86.57 0.61 24.12 16 8 O -0.58 -27.43 16.52 -4.09 -0.07 -27.50 16 9 N -0.61 -24.94 2.98 -824.01 -2.45 -27.39 16 10 C 0.11 3.81 6.41 86.22 0.55 4.37 16 11 C -0.12 -4.19 6.06 30.53 0.19 -4.01 16 12 C -0.11 -4.14 5.11 30.62 0.16 -3.98 16 13 C 0.04 1.74 2.25 -11.46 -0.03 1.72 16 14 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 15 C -0.53 -27.37 8.56 25.60 0.22 -27.15 16 16 H 0.06 2.80 7.74 -2.91 -0.02 2.77 16 17 C 0.02 1.25 5.30 84.66 0.45 1.70 16 18 N -0.90 -46.80 11.39 21.45 0.24 -46.56 16 19 Si 0.95 40.70 29.54 68.60 2.03 42.73 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 23 C 0.12 5.47 5.25 86.36 0.45 5.93 16 24 H 0.11 3.15 8.05 -2.91 -0.02 3.13 16 25 H 0.13 3.39 8.01 -2.91 -0.02 3.37 16 26 H 0.05 2.32 8.06 -2.39 -0.02 2.30 16 27 H 0.05 1.88 7.97 -2.39 -0.02 1.86 16 28 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.09 1.91 8.12 -2.39 -0.02 1.89 16 30 H 0.06 1.62 8.12 -2.39 -0.02 1.60 16 31 H 0.06 1.73 6.46 -2.39 -0.02 1.71 16 32 H 0.08 1.79 8.12 -2.39 -0.02 1.77 16 33 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.08 2.84 6.99 -2.39 -0.02 2.82 16 35 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.26 13.06 8.31 -92.70 -0.77 12.29 16 41 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.10 4.94 4.36 -2.39 -0.01 4.93 16 Total: -1.00 -60.26 335.49 2.16 -58.10 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.97 Total: 20.86 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 6.22 Total: 2.67 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -6.99 Total: -96.86 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.07 Total: -27.50 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -60.26 2.16 -58.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855257425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.474 kcal (2) G-P(sol) polarization free energy of solvation -60.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds