Wall clock time and date at job start Mon Mar 30 2020 01:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47623 * 110.99833 * 2 1 4 4 C 1.52594 * 111.73171 * 181.86209 * 3 2 1 5 5 C 1.53858 * 110.51622 * 305.84075 * 4 3 2 6 6 C 1.51619 * 106.99285 * 56.30564 * 5 4 3 7 7 H 1.09002 * 109.52906 * 54.74346 * 6 5 4 8 8 C 1.45625 * 111.00460 * 121.03168 * 2 1 3 9 9 H 1.09002 * 111.27526 * 292.45013 * 8 2 1 10 10 C 1.53578 * 115.87102 * 60.33386 * 8 2 1 11 11 C 1.55335 * 101.79154 * 153.73227 * 10 8 2 12 12 N 1.45445 * 117.44548 * 180.46578 * 6 5 4 13 13 C 1.34783 * 126.42239 * 327.83580 * 12 6 5 14 14 O 1.21282 * 119.99566 * 0.02562 * 13 12 6 15 15 C 1.50695 * 119.99750 * 180.02562 * 13 12 6 16 16 C 1.53002 * 109.46783 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47188 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99791 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99934 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99703 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00065 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46748 * 90.00114 * 21 19 17 23 23 H 1.48496 * 109.47096 * 209.99935 * 21 19 17 24 24 H 1.48496 * 109.47142 * 329.99845 * 21 19 17 25 25 H 1.09004 * 109.47246 * 298.96482 * 1 2 3 26 26 H 1.08993 * 109.47601 * 58.97056 * 1 2 3 27 27 H 1.09008 * 109.46957 * 178.97064 * 1 2 3 28 28 H 1.08994 * 109.03556 * 302.44647 * 3 2 1 29 29 H 1.09002 * 109.02910 * 61.28748 * 3 2 1 30 30 H 1.09005 * 109.12995 * 66.77337 * 4 3 2 31 31 H 1.09003 * 109.14009 * 185.88959 * 4 3 2 32 32 H 1.09008 * 111.31803 * 296.15460 * 5 4 3 33 33 H 1.08997 * 108.56537 * 174.92759 * 5 4 3 34 34 H 1.08994 * 110.96487 * 35.60721 * 10 8 2 35 35 H 1.08999 * 110.99489 * 271.86821 * 10 8 2 36 36 H 1.08998 * 109.91959 * 218.22892 * 11 10 8 37 37 H 1.09000 * 110.09198 * 97.01273 * 11 10 8 38 38 H 1.09005 * 109.47682 * 299.99909 * 15 13 12 39 39 H 1.08995 * 109.47681 * 60.00857 * 15 13 12 40 40 H 1.09003 * 109.47494 * 299.99967 * 16 15 13 41 41 H 1.09001 * 109.47359 * 60.00310 * 16 15 13 42 42 H 0.97004 * 119.99577 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9980 1.3782 0.0000 4 6 3.5231 1.3980 -0.0461 5 6 4.1081 0.5478 1.0950 6 6 3.5235 -0.8442 0.9550 7 1 3.7194 -1.2224 -0.0483 8 6 1.9910 -0.7008 1.1649 9 1 1.7706 -0.1584 2.0844 10 6 1.5927 -2.1786 1.2921 11 6 2.7709 -2.7544 2.1246 12 7 3.9223 -1.8406 1.9367 13 6 5.1156 -1.9185 2.5586 14 8 5.9805 -1.1038 2.3152 15 6 5.3749 -3.0178 3.5561 16 6 6.7938 -2.8782 4.1114 17 6 7.0534 -3.9779 5.1085 18 1 6.2836 -4.7040 5.3243 19 6 8.2742 -4.0577 5.7446 20 7 8.5005 -5.0171 6.6151 21 14 9.6064 -2.8030 5.3698 22 1 9.4772 -1.6515 6.2985 23 1 10.9408 -3.4312 5.5428 24 1 9.4602 -2.3289 3.9701 25 1 -0.3634 0.4977 0.8991 26 1 -0.3634 0.5297 -0.8805 27 1 -0.3633 -1.0276 -0.0185 28 1 1.6093 1.9082 -0.8695 29 1 1.6632 1.8874 0.9038 30 1 3.8565 1.0076 -1.0076 31 1 3.8706 2.4256 0.0611 32 1 3.8517 0.9626 2.0699 33 1 5.1912 0.5097 0.9792 34 1 1.5385 -2.6536 0.3125 35 1 0.6489 -2.2841 1.8272 36 1 3.0260 -3.7518 1.7665 37 1 2.4987 -2.7970 3.1792 38 1 4.6567 -2.9444 4.3728 39 1 5.2700 -3.9856 3.0659 40 1 7.5123 -2.9514 3.2950 41 1 6.8985 -1.9104 4.6019 42 1 9.3593 -5.0730 7.0629 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874829695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:58 Heat of formation + Delta-G solvation = -33.968321 kcal Electronic energy + Delta-G solvation = -20975.596457 eV Core-core repulsion = 17955.138462 eV Total energy + Delta-G solvation = -3020.457995 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.74238 -38.49129 -36.03806 -33.87083 -33.38477 -31.49638 -30.54264 -29.06457 -26.73143 -26.14923 -23.44258 -23.15364 -21.51742 -20.80820 -20.12689 -18.50570 -17.08204 -16.43157 -15.94627 -15.68733 -15.13223 -15.12328 -14.58577 -14.19437 -14.04419 -13.84023 -13.49953 -13.07622 -12.95709 -12.59257 -12.47248 -12.35793 -11.98414 -11.88115 -11.59201 -11.33839 -11.19974 -10.99834 -10.96423 -10.88889 -10.32571 -10.12606 -9.99835 -9.75079 -9.17371 -9.05639 -8.71390 -8.49777 -8.41538 -6.01450 -3.99939 3.08301 3.15385 3.39277 3.45745 3.57162 3.70559 4.19606 4.44617 4.52607 4.73720 4.80948 4.83399 5.00528 5.06667 5.15159 5.17263 5.22259 5.31919 5.34175 5.39344 5.52545 5.57360 5.59429 5.65098 5.65640 5.78605 5.88422 5.90723 6.07682 6.13756 6.25685 6.30259 6.52948 6.68753 6.73625 6.84119 7.38772 7.46126 7.76728 7.85383 8.51636 8.67659 9.01689 9.61780 11.11415 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036507 B = 0.004267 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.785602 B = 6559.724908 C = 7205.904183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.519 5.519 3 C 0.049 3.951 4 C -0.114 4.114 5 C -0.123 4.123 6 C 0.142 3.858 7 H 0.076 0.924 8 C 0.056 3.944 9 H 0.057 0.943 10 C -0.121 4.121 11 C 0.106 3.894 12 N -0.624 5.624 13 C 0.529 3.471 14 O -0.535 6.535 15 C -0.117 4.117 16 C 0.002 3.998 17 C -0.524 4.524 18 H 0.072 0.928 19 C 0.069 3.931 20 N -0.904 5.904 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.261 1.261 25 H 0.025 0.975 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.033 0.967 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.024 0.976 41 H 0.018 0.982 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.359 10.264 -14.074 25.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.244 5.244 3 C -0.078 4.078 4 C -0.152 4.152 5 C -0.161 4.161 6 C 0.037 3.963 7 H 0.094 0.906 8 C -0.053 4.053 9 H 0.075 0.925 10 C -0.159 4.159 11 C -0.018 4.018 12 N -0.361 5.361 13 C 0.320 3.680 14 O -0.411 6.411 15 C -0.157 4.157 16 C -0.036 4.036 17 C -0.562 4.562 18 H 0.090 0.910 19 C -0.132 4.132 20 N -0.543 5.543 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.185 1.185 25 H 0.044 0.956 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.042 0.958 41 H 0.037 0.963 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.489 10.370 -14.482 24.963 hybrid contribution 0.277 0.947 0.700 1.209 sum -17.213 11.317 -13.782 24.785 Atomic orbital electron populations 1.22398 0.87296 1.02393 1.00604 1.62544 1.07886 1.14502 1.39427 1.22218 0.96053 0.88772 1.00776 1.21619 0.93779 1.00356 0.99491 1.21669 1.02664 0.93535 0.98201 1.21245 0.92205 0.89931 0.92887 0.90618 1.22677 0.95627 0.94912 0.92124 0.92498 1.22518 0.97659 0.94498 1.01231 1.22365 0.85125 0.93865 1.00415 1.48404 1.13895 1.30017 1.43744 1.21242 0.79218 0.86736 0.80792 1.90628 1.43626 1.42601 1.64261 1.21648 1.02316 0.95542 0.96164 1.19377 0.90381 0.97447 0.96412 1.21113 1.00485 1.12172 1.22410 0.90962 1.24970 0.98351 0.95403 0.94511 1.69915 1.24074 1.32652 1.27663 0.86796 0.81027 0.81729 0.80023 1.20266 1.21442 1.18505 0.95593 0.91320 0.90989 0.90631 0.94852 0.90995 0.91008 0.91824 0.89447 0.89590 0.90248 0.90761 0.90843 0.89825 0.89706 0.95808 0.96316 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.40 60.06 0.56 0.72 16 2 N -0.52 -4.92 4.96 -233.65 -1.16 -6.08 16 3 C 0.05 0.44 5.35 -3.63 -0.02 0.42 16 4 C -0.11 -1.15 6.02 -26.49 -0.16 -1.31 16 5 C -0.12 -1.65 4.97 -26.98 -0.13 -1.78 16 6 C 0.14 1.89 2.67 -67.95 -0.18 1.71 16 7 H 0.08 1.06 8.12 -51.93 -0.42 0.64 16 8 C 0.06 0.60 2.10 -66.85 -0.14 0.46 16 9 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 10 C -0.12 -1.08 5.76 -25.19 -0.14 -1.22 16 11 C 0.11 1.18 6.62 -1.87 -0.01 1.17 16 12 N -0.62 -9.37 3.28 -163.45 -0.54 -9.91 16 13 C 0.53 10.16 7.77 -10.98 -0.09 10.08 16 14 O -0.54 -12.06 14.25 5.56 0.08 -11.98 16 15 C -0.12 -2.35 4.89 -27.88 -0.14 -2.49 16 16 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 17 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 18 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 20 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 21 Si 0.88 22.83 27.47 -169.99 -4.67 18.16 16 22 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.26 -6.77 6.54 56.52 0.37 -6.40 16 25 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.47 7.44 -51.92 -0.39 0.08 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.90 8.11 -51.92 -0.42 0.48 16 33 H 0.09 1.41 6.72 -51.93 -0.35 1.06 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 40 H 0.02 0.63 7.15 -51.93 -0.37 0.26 16 41 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 325.79 15.07 4.91 4.91 Total: -1.00 -33.47 325.79 -8.99 -42.46 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -7.42 Total: -4.26 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.97 Total: -5.84 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: -0.92 Total: -43.45 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.67 Total: 18.16 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.47 -8.99 -42.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874829695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.495 kcal (2) G-P(sol) polarization free energy of solvation -33.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds