Wall clock time and date at job start Mon Mar 30 2020 01:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47623 * 110.99833 * 2 1 4 4 C 1.52594 * 111.73171 * 181.86209 * 3 2 1 5 5 C 1.53858 * 110.51622 * 305.84075 * 4 3 2 6 6 C 1.51619 * 106.99285 * 56.30564 * 5 4 3 7 7 H 1.09002 * 109.52906 * 54.74346 * 6 5 4 8 8 C 1.45625 * 111.00460 * 121.03168 * 2 1 3 9 9 H 1.09002 * 111.27526 * 292.45013 * 8 2 1 10 10 C 1.53578 * 115.87102 * 60.33386 * 8 2 1 11 11 C 1.55335 * 101.79154 * 153.73227 * 10 8 2 12 12 N 1.45445 * 117.44548 * 180.46578 * 6 5 4 13 13 C 1.34783 * 126.42239 * 327.83580 * 12 6 5 14 14 O 1.21282 * 119.99566 * 0.02562 * 13 12 6 15 15 C 1.50695 * 119.99750 * 180.02562 * 13 12 6 16 16 C 1.53002 * 109.46783 * 180.02562 * 15 13 12 17 17 C 1.50703 * 109.47188 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99791 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99934 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99703 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 120.00065 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.46748 * 90.00114 * 21 19 17 23 23 H 1.48496 * 109.47096 * 209.99935 * 21 19 17 24 24 H 1.48496 * 109.47142 * 329.99845 * 21 19 17 25 25 H 1.09004 * 109.47246 * 298.96482 * 1 2 3 26 26 H 1.08993 * 109.47601 * 58.97056 * 1 2 3 27 27 H 1.09008 * 109.46957 * 178.97064 * 1 2 3 28 28 H 1.08994 * 109.03556 * 302.44647 * 3 2 1 29 29 H 1.09002 * 109.02910 * 61.28748 * 3 2 1 30 30 H 1.09005 * 109.12995 * 66.77337 * 4 3 2 31 31 H 1.09003 * 109.14009 * 185.88959 * 4 3 2 32 32 H 1.09008 * 111.31803 * 296.15460 * 5 4 3 33 33 H 1.08997 * 108.56537 * 174.92759 * 5 4 3 34 34 H 1.08994 * 110.96487 * 35.60721 * 10 8 2 35 35 H 1.08999 * 110.99489 * 271.86821 * 10 8 2 36 36 H 1.08998 * 109.91959 * 218.22892 * 11 10 8 37 37 H 1.09000 * 110.09198 * 97.01273 * 11 10 8 38 38 H 1.09005 * 109.47682 * 299.99909 * 15 13 12 39 39 H 1.08995 * 109.47681 * 60.00857 * 15 13 12 40 40 H 1.09003 * 109.47494 * 299.99967 * 16 15 13 41 41 H 1.09001 * 109.47359 * 60.00310 * 16 15 13 42 42 H 0.97004 * 119.99577 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9980 1.3782 0.0000 4 6 3.5231 1.3980 -0.0461 5 6 4.1081 0.5478 1.0950 6 6 3.5235 -0.8442 0.9550 7 1 3.7194 -1.2224 -0.0483 8 6 1.9910 -0.7008 1.1649 9 1 1.7706 -0.1584 2.0844 10 6 1.5927 -2.1786 1.2921 11 6 2.7709 -2.7544 2.1246 12 7 3.9223 -1.8406 1.9367 13 6 5.1156 -1.9185 2.5586 14 8 5.9805 -1.1038 2.3152 15 6 5.3749 -3.0178 3.5561 16 6 6.7938 -2.8782 4.1114 17 6 7.0534 -3.9779 5.1085 18 1 6.2836 -4.7040 5.3243 19 6 8.2742 -4.0577 5.7446 20 7 8.5005 -5.0171 6.6151 21 14 9.6064 -2.8030 5.3698 22 1 9.4772 -1.6515 6.2985 23 1 10.9408 -3.4312 5.5428 24 1 9.4602 -2.3289 3.9701 25 1 -0.3634 0.4977 0.8991 26 1 -0.3634 0.5297 -0.8805 27 1 -0.3633 -1.0276 -0.0185 28 1 1.6093 1.9082 -0.8695 29 1 1.6632 1.8874 0.9038 30 1 3.8565 1.0076 -1.0076 31 1 3.8706 2.4256 0.0611 32 1 3.8517 0.9626 2.0699 33 1 5.1912 0.5097 0.9792 34 1 1.5385 -2.6536 0.3125 35 1 0.6489 -2.2841 1.8272 36 1 3.0260 -3.7518 1.7665 37 1 2.4987 -2.7970 3.1792 38 1 4.6567 -2.9444 4.3728 39 1 5.2700 -3.9856 3.0659 40 1 7.5123 -2.9514 3.2950 41 1 6.8985 -1.9104 4.6019 42 1 9.3593 -5.0730 7.0629 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874829695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:57 Heat of formation + Delta-G solvation = -57.094305 kcal Electronic energy + Delta-G solvation = -20976.599275 eV Core-core repulsion = 17955.138462 eV Total energy + Delta-G solvation = -3021.460812 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.79205 -39.77852 -37.07935 -35.59891 -34.63031 -33.39124 -31.79897 -29.97280 -28.01921 -27.41443 -24.67512 -24.13848 -22.58683 -22.31111 -21.09094 -19.93190 -18.99955 -17.73427 -17.20007 -16.77536 -16.30344 -16.23137 -15.94151 -15.59438 -15.29930 -14.90815 -14.65752 -14.49798 -14.34877 -14.04881 -13.47498 -13.42428 -13.20934 -13.06745 -12.90230 -12.56670 -12.41863 -12.10304 -12.03011 -12.00792 -11.86429 -11.78877 -11.73465 -11.41271 -11.26533 -10.79370 -10.54406 -9.64750 -9.42377 -8.32868 -6.35699 1.31698 1.33627 1.49109 1.64365 1.93954 2.33816 2.94814 3.02673 3.25590 3.60569 3.84214 3.92386 4.00248 4.06581 4.18487 4.30594 4.31248 4.34651 4.44015 4.47438 4.54292 4.58553 4.72631 4.78622 4.82479 4.90436 4.92390 4.99684 5.01697 5.09312 5.16187 5.20045 5.26671 5.32010 5.41620 5.48138 5.59021 6.00119 6.09131 6.22231 6.50994 6.70222 7.21730 7.29636 8.82800 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.036507 B = 0.004267 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.785602 B = 6559.724908 C = 7205.904183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.527 5.527 3 C 0.051 3.949 4 C -0.107 4.107 5 C -0.121 4.121 6 C 0.131 3.869 7 H 0.070 0.930 8 C 0.068 3.932 9 H 0.049 0.951 10 C -0.108 4.108 11 C 0.094 3.906 12 N -0.619 5.619 13 C 0.527 3.473 14 O -0.579 6.579 15 C -0.109 4.109 16 C 0.007 3.993 17 C -0.529 4.529 18 H 0.051 0.949 19 C 0.015 3.985 20 N -0.942 5.942 21 Si 0.937 3.063 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.263 1.263 25 H 0.028 0.972 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.009 0.991 41 H 0.007 0.993 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.518 11.022 -15.359 27.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.252 5.252 3 C -0.077 4.077 4 C -0.146 4.146 5 C -0.159 4.159 6 C 0.027 3.973 7 H 0.088 0.912 8 C -0.042 4.042 9 H 0.067 0.933 10 C -0.145 4.145 11 C -0.028 4.028 12 N -0.353 5.353 13 C 0.318 3.682 14 O -0.459 6.459 15 C -0.148 4.148 16 C -0.031 4.031 17 C -0.567 4.567 18 H 0.069 0.931 19 C -0.183 4.183 20 N -0.583 5.583 21 Si 0.762 3.238 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.188 1.188 25 H 0.047 0.953 26 H 0.099 0.901 27 H 0.101 0.899 28 H 0.114 0.886 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.113 0.887 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.027 0.973 41 H 0.026 0.974 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.713 11.116 -15.784 27.591 hybrid contribution 0.869 0.670 1.081 1.540 sum -18.843 11.786 -14.703 26.649 Atomic orbital electron populations 1.22472 0.85465 1.03380 1.01337 1.62552 1.09484 1.14578 1.38542 1.22230 0.94777 0.88915 1.01756 1.21577 0.94928 1.00231 0.97838 1.21604 1.00730 0.94632 0.98932 1.21422 0.94684 0.89238 0.91926 0.91165 1.22541 0.93102 0.96181 0.92354 0.93269 1.22518 0.97612 0.92790 1.01626 1.22730 0.84513 0.93766 1.01772 1.48345 1.13479 1.30858 1.42647 1.20911 0.80219 0.86033 0.81022 1.90614 1.45461 1.43986 1.65844 1.21445 0.99400 0.96850 0.97140 1.19210 0.93460 0.95405 0.95003 1.21402 0.99968 1.12455 1.22838 0.93106 1.25780 1.00751 0.97247 0.94480 1.70020 1.25033 1.34370 1.28857 0.85843 0.78732 0.79584 0.79647 1.19343 1.20153 1.18791 0.95322 0.90094 0.89948 0.88592 0.94790 0.91024 0.89882 0.93078 0.92920 0.88710 0.87491 0.89675 0.89875 0.88354 0.88324 0.97278 0.97418 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.40 127.69 1.20 1.43 16 2 N -0.53 -8.47 4.96 -893.13 -4.43 -12.90 16 3 C 0.05 0.79 5.35 86.03 0.46 1.25 16 4 C -0.11 -2.06 6.02 30.75 0.18 -1.87 16 5 C -0.12 -3.29 4.97 30.43 0.15 -3.14 16 6 C 0.13 3.41 2.67 45.54 0.12 3.53 16 7 H 0.07 1.92 8.12 -2.39 -0.02 1.90 16 8 C 0.07 1.28 2.10 46.16 0.10 1.38 16 9 H 0.05 1.02 8.06 -2.39 -0.02 1.00 16 10 C -0.11 -1.55 5.76 31.59 0.18 -1.37 16 11 C 0.09 1.88 6.62 86.86 0.57 2.45 16 12 N -0.62 -18.11 3.28 -789.42 -2.59 -20.70 16 13 C 0.53 20.37 7.77 87.65 0.68 21.05 16 14 O -0.58 -26.87 14.25 -3.03 -0.04 -26.91 16 15 C -0.11 -4.35 4.89 29.85 0.15 -4.21 16 16 C 0.01 0.37 3.33 29.85 0.10 0.47 16 17 C -0.53 -31.06 9.66 25.60 0.25 -30.81 16 18 H 0.05 3.13 7.99 -2.91 -0.02 3.10 16 19 C 0.02 0.92 5.47 84.65 0.46 1.38 16 20 N -0.94 -59.50 13.96 21.45 0.30 -59.20 16 21 Si 0.94 47.55 27.47 68.60 1.88 49.43 16 22 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.26 -13.39 6.54 99.48 0.65 -12.74 16 25 H 0.03 0.31 8.14 -2.38 -0.02 0.29 16 26 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.08 0.73 7.44 -2.38 -0.02 0.71 16 28 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.03 0.53 8.12 -2.39 -0.02 0.51 16 30 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.48 8.11 -2.38 -0.02 1.46 16 33 H 0.05 1.79 6.72 -2.39 -0.02 1.77 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.10 3.61 8.14 -2.38 -0.02 3.59 16 39 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 40 H 0.01 0.48 7.15 -2.39 -0.02 0.46 16 41 H 0.01 0.40 7.53 -2.39 -0.02 0.38 16 42 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -73.61 325.79 0.64 -72.96 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: 0.91 Total: 5.79 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 4.61 Total: -8.47 kcal Atomic # 7 Polarization: -86.09 SS G_CDS: -6.72 Total: -92.80 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.04 Total: -26.91 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.88 Total: 49.43 kcal Total: -73.61 0.64 -72.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874829695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.868 kcal (2) G-P(sol) polarization free energy of solvation -73.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds