Wall clock time and date at job start Mon Mar 30 2020 01:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46123 * 110.99877 * 2 1 4 4 C 1.53242 * 108.66379 * 187.40336 * 3 2 1 5 5 C 1.52591 * 108.34834 * 295.89224 * 4 3 2 6 6 C 1.51479 * 112.72299 * 53.97133 * 5 4 3 7 7 H 1.09001 * 107.80761 * 201.18239 * 6 5 4 8 8 C 1.45551 * 110.99732 * 128.11143 * 2 1 3 9 9 H 1.09007 * 110.38606 * 313.58875 * 8 2 1 10 10 C 1.55907 * 107.73534 * 74.32038 * 8 2 1 11 11 C 1.55050 * 101.22386 * 85.08403 * 10 8 2 12 12 N 1.46780 * 112.06508 * 84.89994 * 6 5 4 13 13 C 1.34773 * 126.03254 * 50.10397 * 12 6 5 14 14 O 1.21279 * 119.99593 * 359.93695 * 13 12 6 15 15 C 1.50693 * 120.00036 * 179.97438 * 13 12 6 16 16 C 1.53000 * 109.47267 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47519 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99411 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00154 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99569 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00084 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46963 * 90.00429 * 21 19 17 23 23 H 1.48496 * 109.47103 * 210.00326 * 21 19 17 24 24 H 1.48505 * 109.47191 * 330.00934 * 21 19 17 25 25 H 1.08994 * 109.47455 * 291.88744 * 1 2 3 26 26 H 1.08997 * 109.47055 * 51.89246 * 1 2 3 27 27 H 1.08999 * 109.46860 * 171.88957 * 1 2 3 28 28 H 1.09000 * 109.60641 * 307.15781 * 3 2 1 29 29 H 1.09007 * 109.60963 * 67.48464 * 3 2 1 30 30 H 1.08996 * 109.69064 * 55.60415 * 4 3 2 31 31 H 1.08998 * 109.69367 * 176.13546 * 4 3 2 32 32 H 1.09001 * 108.94303 * 175.11766 * 5 4 3 33 33 H 1.09006 * 108.93807 * 293.81244 * 5 4 3 34 34 H 1.09002 * 111.07264 * 327.10366 * 10 8 2 35 35 H 1.08996 * 111.10798 * 203.08306 * 10 8 2 36 36 H 1.09002 * 110.36264 * 155.64438 * 11 10 8 37 37 H 1.09005 * 110.36178 * 277.84783 * 11 10 8 38 38 H 1.08998 * 109.47517 * 300.00454 * 15 13 12 39 39 H 1.09007 * 109.47011 * 60.00769 * 15 13 12 40 40 H 1.08998 * 109.46995 * 300.00495 * 16 15 13 41 41 H 1.09000 * 109.47333 * 60.00257 * 16 15 13 42 42 H 0.97006 * 119.99908 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9927 1.3642 0.0000 4 6 3.5125 1.3061 -0.1871 5 6 4.1183 0.5964 1.0203 6 6 3.4968 -0.7616 1.2734 7 1 3.6860 -1.0262 2.3138 8 6 1.9906 -0.8387 1.0692 9 1 1.4689 -0.6310 2.0035 10 6 1.7861 -2.3260 0.6488 11 6 3.0540 -2.5744 -0.2084 12 7 4.1255 -1.8147 0.4671 13 6 5.4485 -2.0494 0.3620 14 8 6.2374 -1.3554 0.9678 15 6 5.9475 -3.1735 -0.5087 16 6 7.4757 -3.2231 -0.4515 17 6 7.9748 -4.3468 -1.3228 18 1 7.2723 -4.9642 -1.8629 19 6 9.3283 -4.5875 -1.4296 20 7 9.7637 -5.5684 -2.1895 21 14 10.5432 -3.5201 -0.4948 22 1 10.7956 -4.1129 0.8432 23 1 11.8190 -3.4438 -1.2509 24 1 9.9810 -2.1552 -0.3333 25 1 -0.3634 0.3831 0.9535 26 1 -0.3633 0.6342 -0.8086 27 1 -0.3633 -1.0174 -0.1450 28 1 1.5447 1.9279 -0.8183 29 1 1.7567 1.8466 0.9486 30 1 3.7498 0.7526 -1.0955 31 1 3.9128 2.3174 -0.2583 32 1 5.1889 0.4722 0.8573 33 1 3.9648 1.2123 1.9065 34 1 0.8810 -2.4440 0.0529 35 1 1.7674 -2.9811 1.5197 36 1 3.2966 -3.6369 -0.2277 37 1 2.9057 -2.2015 -1.2219 38 1 5.5400 -4.1189 -0.1507 39 1 5.6274 -3.0060 -1.5372 40 1 7.8835 -2.2777 -0.8093 41 1 7.7956 -3.3907 0.5769 42 1 10.7159 -5.7376 -2.2649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874829696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:01 Heat of formation + Delta-G solvation = -32.724733 kcal Electronic energy + Delta-G solvation = -21180.667441 eV Core-core repulsion = 18160.263373 eV Total energy + Delta-G solvation = -3020.404069 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.69852 -38.39174 -35.76147 -33.95302 -33.37086 -31.50832 -30.46441 -29.15299 -26.69931 -26.10188 -23.52944 -23.38446 -21.77946 -21.01674 -19.39620 -18.18667 -17.02239 -16.64573 -15.98650 -15.79564 -15.43560 -15.02166 -14.51217 -14.14003 -13.86830 -13.53910 -13.36735 -13.18633 -12.74186 -12.53800 -12.52413 -12.25504 -12.12488 -11.83047 -11.66015 -11.41910 -11.30870 -10.95041 -10.84042 -10.66488 -10.39631 -10.09297 -9.98195 -9.73235 -9.15400 -9.03960 -8.48450 -8.47524 -8.33268 -5.99801 -3.98107 3.16153 3.27291 3.40430 3.46805 3.58264 3.58768 4.22119 4.45838 4.54071 4.74780 4.86135 4.88489 5.04509 5.13304 5.18288 5.21863 5.33769 5.35851 5.40089 5.45497 5.49047 5.55895 5.58404 5.73650 5.77385 5.85282 5.95053 6.02108 6.10863 6.18679 6.20977 6.31446 6.64617 6.77848 6.84666 6.96050 7.41035 7.48288 7.79911 7.89615 8.53680 8.70532 9.03603 9.63503 11.13115 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.034509 B = 0.004461 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.194194 B = 6274.669223 C = 6683.143035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.546 5.546 3 C 0.065 3.935 4 C -0.113 4.113 5 C -0.136 4.136 6 C 0.151 3.849 7 H 0.059 0.941 8 C 0.087 3.913 9 H 0.057 0.943 10 C -0.127 4.127 11 C 0.109 3.891 12 N -0.620 5.620 13 C 0.529 3.471 14 O -0.541 6.541 15 C -0.116 4.116 16 C 0.002 3.998 17 C -0.523 4.523 18 H 0.072 0.928 19 C 0.069 3.931 20 N -0.904 5.904 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.261 1.261 25 H 0.023 0.977 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.023 0.977 41 H 0.018 0.982 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.467 11.860 5.696 25.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.271 5.271 3 C -0.063 4.063 4 C -0.150 4.150 5 C -0.174 4.174 6 C 0.047 3.953 7 H 0.078 0.922 8 C -0.022 4.022 9 H 0.075 0.925 10 C -0.165 4.165 11 C -0.014 4.014 12 N -0.357 5.357 13 C 0.320 3.680 14 O -0.417 6.417 15 C -0.156 4.156 16 C -0.036 4.036 17 C -0.561 4.561 18 H 0.090 0.910 19 C -0.132 4.132 20 N -0.543 5.543 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.185 1.185 25 H 0.041 0.959 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.049 0.951 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.041 0.959 41 H 0.037 0.963 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.606 11.921 5.560 24.447 hybrid contribution 0.323 0.767 1.180 1.444 sum -20.284 12.688 6.740 24.856 Atomic orbital electron populations 1.22349 0.86756 1.02479 1.00207 1.60273 1.07245 1.12839 1.46755 1.21938 0.96023 0.88268 1.00045 1.21480 0.93839 1.00437 0.99287 1.21455 1.03337 0.94482 0.98161 1.20587 0.90438 0.89107 0.95183 0.92248 1.21970 0.93874 0.93886 0.92428 0.92520 1.23109 0.98530 0.94635 1.00273 1.22258 0.85948 0.96572 0.96596 1.48744 1.05649 1.32337 1.48950 1.21201 0.79247 0.85851 0.81709 1.90609 1.54215 1.49962 1.46959 1.21643 1.00704 0.94916 0.98328 1.19371 0.89030 0.97765 0.97424 1.21117 0.92853 1.14417 1.27726 0.90954 1.24963 0.98416 0.94923 0.94917 1.69916 1.14597 1.30443 1.39375 0.86799 0.80456 0.82303 0.80020 1.20275 1.21465 1.18532 0.95855 0.91309 0.91145 0.90676 0.95145 0.90895 0.91365 0.88719 0.92123 0.89403 0.90539 0.90547 0.90878 0.89832 0.89719 0.95864 0.96329 0.92761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.38 60.07 0.56 0.77 16 2 N -0.55 -5.18 4.35 -235.05 -1.02 -6.20 16 3 C 0.06 0.60 5.51 -4.12 -0.02 0.58 16 4 C -0.11 -1.27 6.20 -26.82 -0.17 -1.44 16 5 C -0.14 -1.81 5.48 -27.71 -0.15 -1.96 16 6 C 0.15 1.98 2.78 -68.96 -0.19 1.79 16 7 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 8 C 0.09 0.88 2.71 -67.30 -0.18 0.70 16 9 H 0.06 0.52 8.02 -51.92 -0.42 0.11 16 10 C -0.13 -1.16 6.55 -24.09 -0.16 -1.32 16 11 C 0.11 1.29 6.66 -2.30 -0.02 1.27 16 12 N -0.62 -9.35 3.20 -165.02 -0.53 -9.88 16 13 C 0.53 10.21 7.61 -10.99 -0.08 10.12 16 14 O -0.54 -12.25 14.32 5.56 0.08 -12.17 16 15 C -0.12 -2.36 4.69 -27.89 -0.13 -2.49 16 16 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 17 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 18 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 21 Si 0.88 22.91 27.47 -169.99 -4.67 18.24 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.26 -6.80 6.54 56.52 0.37 -6.43 16 25 H 0.02 0.15 8.11 -51.93 -0.42 -0.27 16 26 H 0.07 0.43 8.00 -51.93 -0.42 0.02 16 27 H 0.07 0.44 6.56 -51.93 -0.34 0.10 16 28 H 0.07 0.61 8.01 -51.93 -0.42 0.20 16 29 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.60 5.77 -51.93 -0.30 1.30 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.09 0.67 6.45 -51.93 -0.33 0.33 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.87 7.57 -51.93 -0.39 0.47 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.58 7.89 -51.93 -0.41 1.17 16 39 H 0.08 1.63 8.14 -51.92 -0.42 1.21 16 40 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 41 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 42 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 322.54 15.07 4.86 4.86 Total: -1.00 -33.51 322.54 -8.74 -42.25 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -7.18 Total: -3.96 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.06 Total: -5.60 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.78 Total: -43.63 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.08 Total: -12.17 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.67 Total: 18.24 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.51 -8.74 -42.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874829696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.526 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds