Wall clock time and date at job start Mon Mar 30 2020 01:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46123 * 110.99877 * 2 1 4 4 C 1.53242 * 108.66379 * 187.40336 * 3 2 1 5 5 C 1.52591 * 108.34834 * 295.89224 * 4 3 2 6 6 C 1.51479 * 112.72299 * 53.97133 * 5 4 3 7 7 H 1.09001 * 107.80761 * 201.18239 * 6 5 4 8 8 C 1.45551 * 110.99732 * 128.11143 * 2 1 3 9 9 H 1.09007 * 110.38606 * 313.58875 * 8 2 1 10 10 C 1.55907 * 107.73534 * 74.32038 * 8 2 1 11 11 C 1.55050 * 101.22386 * 85.08403 * 10 8 2 12 12 N 1.46780 * 112.06508 * 84.89994 * 6 5 4 13 13 C 1.34773 * 126.03254 * 50.10397 * 12 6 5 14 14 O 1.21279 * 119.99593 * 359.93695 * 13 12 6 15 15 C 1.50693 * 120.00036 * 179.97438 * 13 12 6 16 16 C 1.53000 * 109.47267 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47519 * 180.02562 * 16 15 13 18 18 H 1.07999 * 119.99411 * 359.97438 * 17 16 15 19 19 C 1.37879 * 120.00154 * 180.02562 * 17 16 15 20 20 N 1.31511 * 119.99569 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00084 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46963 * 90.00429 * 21 19 17 23 23 H 1.48496 * 109.47103 * 210.00326 * 21 19 17 24 24 H 1.48505 * 109.47191 * 330.00934 * 21 19 17 25 25 H 1.08994 * 109.47455 * 291.88744 * 1 2 3 26 26 H 1.08997 * 109.47055 * 51.89246 * 1 2 3 27 27 H 1.08999 * 109.46860 * 171.88957 * 1 2 3 28 28 H 1.09000 * 109.60641 * 307.15781 * 3 2 1 29 29 H 1.09007 * 109.60963 * 67.48464 * 3 2 1 30 30 H 1.08996 * 109.69064 * 55.60415 * 4 3 2 31 31 H 1.08998 * 109.69367 * 176.13546 * 4 3 2 32 32 H 1.09001 * 108.94303 * 175.11766 * 5 4 3 33 33 H 1.09006 * 108.93807 * 293.81244 * 5 4 3 34 34 H 1.09002 * 111.07264 * 327.10366 * 10 8 2 35 35 H 1.08996 * 111.10798 * 203.08306 * 10 8 2 36 36 H 1.09002 * 110.36264 * 155.64438 * 11 10 8 37 37 H 1.09005 * 110.36178 * 277.84783 * 11 10 8 38 38 H 1.08998 * 109.47517 * 300.00454 * 15 13 12 39 39 H 1.09007 * 109.47011 * 60.00769 * 15 13 12 40 40 H 1.08998 * 109.46995 * 300.00495 * 16 15 13 41 41 H 1.09000 * 109.47333 * 60.00257 * 16 15 13 42 42 H 0.97006 * 119.99908 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9927 1.3642 0.0000 4 6 3.5125 1.3061 -0.1871 5 6 4.1183 0.5964 1.0203 6 6 3.4968 -0.7616 1.2734 7 1 3.6860 -1.0262 2.3138 8 6 1.9906 -0.8387 1.0692 9 1 1.4689 -0.6310 2.0035 10 6 1.7861 -2.3260 0.6488 11 6 3.0540 -2.5744 -0.2084 12 7 4.1255 -1.8147 0.4671 13 6 5.4485 -2.0494 0.3620 14 8 6.2374 -1.3554 0.9678 15 6 5.9475 -3.1735 -0.5087 16 6 7.4757 -3.2231 -0.4515 17 6 7.9748 -4.3468 -1.3228 18 1 7.2723 -4.9642 -1.8629 19 6 9.3283 -4.5875 -1.4296 20 7 9.7637 -5.5684 -2.1895 21 14 10.5432 -3.5201 -0.4948 22 1 10.7956 -4.1129 0.8432 23 1 11.8190 -3.4438 -1.2509 24 1 9.9810 -2.1552 -0.3333 25 1 -0.3634 0.3831 0.9535 26 1 -0.3633 0.6342 -0.8086 27 1 -0.3633 -1.0174 -0.1450 28 1 1.5447 1.9279 -0.8183 29 1 1.7567 1.8466 0.9486 30 1 3.7498 0.7526 -1.0955 31 1 3.9128 2.3174 -0.2583 32 1 5.1889 0.4722 0.8573 33 1 3.9648 1.2123 1.9065 34 1 0.8810 -2.4440 0.0529 35 1 1.7674 -2.9811 1.5197 36 1 3.2966 -3.6369 -0.2277 37 1 2.9057 -2.2015 -1.2219 38 1 5.5400 -4.1189 -0.1507 39 1 5.6274 -3.0060 -1.5372 40 1 7.8835 -2.2777 -0.8093 41 1 7.7956 -3.3907 0.5769 42 1 10.7159 -5.7376 -2.2649 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874829696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:00 Heat of formation + Delta-G solvation = -55.503554 kcal Electronic energy + Delta-G solvation = -21181.655205 eV Core-core repulsion = 18160.263373 eV Total energy + Delta-G solvation = -3021.391832 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.76254 -39.68322 -36.79725 -35.60945 -34.72596 -33.40086 -31.75733 -30.06915 -28.00658 -27.37809 -24.71556 -24.28267 -22.97664 -22.45840 -20.58730 -19.59614 -18.90639 -17.72667 -17.40495 -16.70943 -16.53495 -16.25086 -16.00248 -15.68970 -15.20173 -14.78576 -14.51121 -14.38844 -14.08838 -14.05587 -13.60618 -13.35943 -13.10162 -13.06046 -12.91086 -12.55087 -12.48851 -12.30667 -12.03548 -11.98912 -11.83951 -11.78427 -11.49888 -11.41027 -11.29179 -10.79027 -10.57550 -9.58676 -9.14255 -8.32486 -6.35352 1.31932 1.33629 1.49278 1.66313 2.01785 2.34178 2.90068 3.02992 3.33595 3.58321 3.86760 3.95483 4.01178 4.02798 4.20622 4.34788 4.36853 4.42234 4.48467 4.52443 4.61057 4.67031 4.76343 4.79992 4.81394 4.89031 4.96018 4.97401 5.04294 5.16866 5.19260 5.23168 5.30820 5.32028 5.41911 5.56211 5.60091 6.19759 6.22782 6.24459 6.54815 6.70440 7.23138 7.29914 8.83271 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.034509 B = 0.004461 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.194194 B = 6274.669223 C = 6683.143035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.559 5.559 3 C 0.070 3.930 4 C -0.108 4.108 5 C -0.135 4.135 6 C 0.144 3.856 7 H 0.051 0.949 8 C 0.094 3.906 9 H 0.075 0.925 10 C -0.114 4.114 11 C 0.099 3.901 12 N -0.613 5.613 13 C 0.527 3.473 14 O -0.583 6.583 15 C -0.108 4.108 16 C 0.008 3.992 17 C -0.529 4.529 18 H 0.050 0.950 19 C 0.016 3.984 20 N -0.942 5.942 21 Si 0.938 3.062 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.264 1.264 25 H 0.030 0.970 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.008 0.992 41 H 0.008 0.992 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.924 12.789 6.425 27.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.285 5.285 3 C -0.057 4.057 4 C -0.146 4.146 5 C -0.174 4.174 6 C 0.041 3.959 7 H 0.069 0.931 8 C -0.015 4.015 9 H 0.092 0.908 10 C -0.152 4.152 11 C -0.023 4.023 12 N -0.347 5.347 13 C 0.318 3.682 14 O -0.464 6.464 15 C -0.148 4.148 16 C -0.030 4.030 17 C -0.567 4.567 18 H 0.068 0.932 19 C -0.182 4.182 20 N -0.583 5.583 21 Si 0.762 3.238 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.189 1.189 25 H 0.049 0.951 26 H 0.095 0.905 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.026 0.974 41 H 0.027 0.973 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.128 12.842 6.281 27.189 hybrid contribution 1.011 0.461 0.909 1.435 sum -22.117 13.303 7.190 26.793 Atomic orbital electron populations 1.22409 0.84823 1.03457 1.00958 1.60287 1.08892 1.12737 1.46543 1.21895 0.94059 0.88666 1.01109 1.21435 0.95822 1.00239 0.97140 1.21403 1.00930 0.95323 0.99712 1.20823 0.92663 0.88201 0.94246 0.93119 1.21908 0.91277 0.94725 0.93619 0.90781 1.23114 0.97700 0.94025 1.00408 1.22549 0.86199 0.96459 0.97049 1.48678 1.04891 1.32802 1.48328 1.20826 0.80627 0.85291 0.81455 1.90592 1.55794 1.51246 1.48757 1.21436 0.97324 0.96500 0.99536 1.19197 0.92646 0.95424 0.95694 1.21399 0.92743 1.14876 1.27690 0.93193 1.25773 1.00403 0.96165 0.95855 1.70019 1.15364 1.32035 1.40856 0.85839 0.78498 0.80276 0.79165 1.19270 1.20121 1.18854 0.95103 0.90511 0.90113 0.89193 0.94233 0.93192 0.90453 0.92819 0.90800 0.87054 0.89462 0.89993 0.90781 0.88350 0.88751 0.97397 0.97340 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.38 127.69 1.20 1.50 16 2 N -0.56 -8.80 4.35 -897.57 -3.91 -12.71 16 3 C 0.07 1.12 5.51 86.53 0.48 1.59 16 4 C -0.11 -2.36 6.20 30.54 0.19 -2.17 16 5 C -0.14 -3.57 5.48 29.96 0.16 -3.40 16 6 C 0.14 3.62 2.78 44.17 0.12 3.74 16 7 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 8 C 0.09 1.60 2.71 45.91 0.12 1.73 16 9 H 0.07 1.07 8.02 -2.38 -0.02 1.05 16 10 C -0.11 -1.69 6.55 32.30 0.21 -1.48 16 11 C 0.10 2.14 6.66 86.85 0.58 2.72 16 12 N -0.61 -18.09 3.20 -794.38 -2.54 -20.63 16 13 C 0.53 20.60 7.61 87.66 0.67 21.27 16 14 O -0.58 -27.24 14.32 -3.03 -0.04 -27.29 16 15 C -0.11 -4.43 4.69 29.85 0.14 -4.30 16 16 C 0.01 0.43 3.33 29.85 0.10 0.53 16 17 C -0.53 -31.36 9.66 25.60 0.25 -31.11 16 18 H 0.05 3.11 7.99 -2.91 -0.02 3.08 16 19 C 0.02 0.96 5.47 84.66 0.46 1.42 16 20 N -0.94 -59.76 13.96 21.45 0.30 -59.46 16 21 Si 0.94 47.77 27.47 68.60 1.88 49.65 16 22 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 23 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.26 -13.50 6.54 99.48 0.65 -12.85 16 25 H 0.03 0.28 8.11 -2.39 -0.02 0.26 16 26 H 0.08 0.67 8.00 -2.39 -0.02 0.65 16 27 H 0.08 0.65 6.56 -2.39 -0.02 0.64 16 28 H 0.09 1.19 8.01 -2.39 -0.02 1.17 16 29 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.88 5.77 -2.39 -0.01 1.87 16 33 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 34 H 0.11 1.19 6.45 -2.39 -0.02 1.18 16 35 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.69 7.57 -2.39 -0.02 1.68 16 37 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.10 3.69 7.89 -2.39 -0.02 3.67 16 39 H 0.09 3.64 8.14 -2.38 -0.02 3.62 16 40 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 41 H 0.01 0.44 7.53 -2.39 -0.02 0.42 16 42 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 Total: -1.00 -73.81 322.54 1.29 -72.52 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 0.92 Total: 5.86 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 4.68 Total: -7.95 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -6.15 Total: -92.80 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.04 Total: -27.29 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 1.88 Total: 49.65 kcal Total: -73.81 1.29 -72.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874829696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.017 kcal (2) G-P(sol) polarization free energy of solvation -73.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds