Wall clock time and date at job start Mon Mar 30 2020 01:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.45027 * 110.99824 * 2 1 4 4 C 1.52818 * 110.88084 * 179.05657 * 3 2 1 5 5 C 1.53047 * 107.98922 * 60.59488 * 4 3 2 6 6 C 1.51126 * 110.10248 * 300.00499 * 5 4 3 7 7 H 1.09004 * 106.75044 * 167.89027 * 6 5 4 8 8 C 1.45074 * 111.00094 * 227.47542 * 2 1 3 9 9 H 1.08996 * 110.77686 * 42.26917 * 8 2 1 10 10 C 1.56213 * 107.24076 * 281.05134 * 8 2 1 11 11 C 1.55093 * 101.02827 * 277.72959 * 10 8 2 12 12 N 1.46319 * 113.07045 * 285.33732 * 6 5 4 13 13 C 1.34771 * 125.94698 * 311.40488 * 12 6 5 14 14 O 1.21280 * 120.00290 * 359.97438 * 13 12 6 15 15 C 1.50707 * 119.99615 * 179.97438 * 13 12 6 16 16 C 1.53003 * 109.46955 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.46981 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00466 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99602 * 179.97438 * 17 16 15 20 20 N 1.31506 * 120.00418 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99411 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47404 * 60.00101 * 21 19 17 23 23 H 1.48507 * 109.46810 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47486 * 299.99800 * 21 19 17 25 25 H 1.09003 * 109.46979 * 63.95604 * 1 2 3 26 26 H 1.09000 * 109.46764 * 183.95461 * 1 2 3 27 27 H 1.08993 * 109.47224 * 303.95441 * 1 2 3 28 28 H 1.09002 * 109.18853 * 299.40683 * 3 2 1 29 29 H 1.09001 * 109.18872 * 58.71060 * 3 2 1 30 30 H 1.09001 * 109.76851 * 180.15278 * 4 3 2 31 31 H 1.08995 * 109.77173 * 300.94012 * 4 3 2 32 32 H 1.08997 * 109.37515 * 179.81110 * 5 4 3 33 33 H 1.09001 * 109.37279 * 60.19287 * 5 4 3 34 34 H 1.09000 * 111.10645 * 35.67089 * 10 8 2 35 35 H 1.08993 * 111.10653 * 159.78677 * 10 8 2 36 36 H 1.08991 * 110.35633 * 81.66626 * 11 10 8 37 37 H 1.09001 * 110.35246 * 203.85462 * 11 10 8 38 38 H 1.09004 * 109.46470 * 299.99227 * 15 13 12 39 39 H 1.08995 * 109.47321 * 59.99519 * 15 13 12 40 40 H 1.09001 * 109.46554 * 299.99641 * 16 15 13 41 41 H 1.08997 * 109.47327 * 59.99110 * 16 15 13 42 42 H 0.96998 * 120.00398 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9887 1.3540 0.0000 4 6 3.5167 1.3509 0.0235 5 6 4.0073 0.6278 -1.2330 6 6 3.4901 -0.7921 -1.2505 7 1 3.6802 -1.1834 -2.2499 8 6 1.9889 -0.9154 -0.9982 9 1 1.4235 -0.8369 -1.9266 10 6 1.8879 -2.3560 -0.4025 11 6 3.1699 -2.4074 0.4688 12 7 4.1865 -1.6677 -0.3074 13 6 5.5225 -1.7794 -0.1702 14 8 6.2613 -1.1169 -0.8675 15 6 6.0985 -2.7278 0.8496 16 6 7.6264 -2.6623 0.8012 17 6 8.2024 -3.6110 1.8206 18 1 7.5446 -4.2013 2.4412 19 6 9.5692 -3.7254 1.9608 20 7 10.3703 -3.0071 1.2047 21 14 10.2831 -4.9009 3.2249 22 1 9.8365 -6.2844 2.9222 23 1 11.7661 -4.8384 3.1769 24 1 9.8145 -4.5149 4.5801 25 1 -0.3633 0.4512 -0.9233 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3633 0.5739 0.8524 28 1 1.6452 1.8696 -0.8968 29 1 1.6179 1.8800 0.8797 30 1 3.8874 2.3759 0.0259 31 1 3.8707 0.8280 0.9119 32 1 5.0972 0.6155 -1.2408 33 1 3.6474 1.1543 -2.1169 34 1 0.9926 -2.4658 0.2094 35 1 1.9178 -3.1092 -1.1898 36 1 2.9962 -1.9197 1.4279 37 1 3.4839 -3.4401 0.6206 38 1 5.7545 -2.4442 1.8443 39 1 5.7707 -3.7432 0.6275 40 1 7.9707 -2.9454 -0.1935 41 1 7.9538 -1.6467 1.0235 42 1 11.3319 -3.0878 1.3031 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874829697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:04 Heat of formation + Delta-G solvation = -35.772743 kcal Electronic energy + Delta-G solvation = -21174.293083 eV Core-core repulsion = 18153.756843 eV Total energy + Delta-G solvation = -3020.536240 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.66695 -38.25575 -35.66643 -33.89523 -33.34053 -31.36205 -30.21764 -29.10419 -26.54686 -25.73634 -23.51352 -23.35947 -21.84056 -21.21670 -19.36122 -18.03399 -16.77872 -16.48774 -15.80402 -15.62560 -15.37421 -14.96442 -14.44000 -14.34549 -13.86921 -13.50091 -13.32918 -13.04918 -12.66657 -12.33539 -12.23229 -12.10928 -11.97201 -11.79826 -11.58160 -11.34413 -11.07189 -10.88702 -10.83635 -10.58484 -10.55977 -10.33425 -9.88698 -9.57279 -9.10023 -8.87314 -8.32852 -8.29471 -8.21274 -5.92165 -3.96348 3.29112 3.37121 3.37636 3.41843 3.44334 3.63037 4.29581 4.50492 4.53821 4.80787 4.92094 4.95045 5.13631 5.17743 5.26335 5.30658 5.39636 5.42623 5.51841 5.53758 5.56257 5.62906 5.65491 5.79541 5.83069 5.92244 6.01999 6.09241 6.24782 6.28986 6.32176 6.41684 6.76660 6.92927 6.98063 7.14927 7.78502 7.91540 7.98857 8.11848 8.43377 8.84527 9.12098 9.66832 11.18811 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.034801 B = 0.004191 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.389478 B = 6679.069737 C = 6999.145084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.563 5.563 3 C 0.078 3.922 4 C -0.116 4.116 5 C -0.139 4.139 6 C 0.148 3.852 7 H 0.058 0.942 8 C 0.096 3.904 9 H 0.060 0.940 10 C -0.127 4.127 11 C 0.112 3.888 12 N -0.619 5.619 13 C 0.528 3.472 14 O -0.534 6.534 15 C -0.124 4.124 16 C 0.038 3.962 17 C -0.526 4.526 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 H 0.022 0.978 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.024 0.976 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.354 5.544 -3.211 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.289 5.289 3 C -0.049 4.049 4 C -0.154 4.154 5 C -0.177 4.177 6 C 0.043 3.957 7 H 0.076 0.924 8 C -0.013 4.013 9 H 0.078 0.922 10 C -0.166 4.166 11 C -0.011 4.011 12 N -0.356 5.356 13 C 0.319 3.681 14 O -0.410 6.410 15 C -0.163 4.163 16 C 0.000 4.000 17 C -0.565 4.565 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.040 0.960 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -21.481 5.761 -3.248 22.476 hybrid contribution 0.079 -0.316 -0.038 0.328 sum -21.402 5.445 -3.286 22.327 Atomic orbital electron populations 1.22260 0.86416 1.02141 1.00259 1.58518 1.06982 1.11880 1.51475 1.21486 0.95763 0.87609 1.00060 1.21510 0.94045 1.00576 0.99226 1.21547 1.04314 0.94130 0.97698 1.20462 0.89895 0.91872 0.93437 0.92441 1.21959 0.93864 0.92768 0.92720 0.92233 1.23181 0.98368 0.95369 0.99660 1.22229 0.86991 0.96696 0.95204 1.48599 1.05354 1.42202 1.39441 1.21249 0.79080 0.83325 0.84403 1.90621 1.57989 1.46127 1.46242 1.21839 1.01654 0.96841 0.96001 1.18894 0.85734 0.97727 0.97604 1.21188 0.91606 1.23737 1.19936 0.92689 1.25015 0.97266 0.95961 0.96087 1.69984 1.03461 1.40279 1.39171 0.86659 0.77921 0.81454 0.81936 1.20268 1.21308 1.20250 0.95962 0.91325 0.91438 0.95752 0.90953 0.91304 0.90900 0.88518 0.91894 0.89598 0.90639 0.91022 0.90796 0.90401 0.90459 0.95883 0.95873 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 9.37 60.07 0.56 0.84 16 2 N -0.56 -5.63 4.09 -236.07 -0.97 -6.60 16 3 C 0.08 0.79 5.47 -4.92 -0.03 0.76 16 4 C -0.12 -1.43 6.18 -26.80 -0.17 -1.60 16 5 C -0.14 -1.94 5.45 -27.65 -0.15 -2.09 16 6 C 0.15 2.03 2.62 -69.12 -0.18 1.85 16 7 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 8 C 0.10 1.01 2.93 -67.12 -0.20 0.81 16 9 H 0.06 0.57 8.00 -51.93 -0.42 0.15 16 10 C -0.13 -1.21 6.50 -23.90 -0.16 -1.37 16 11 C 0.11 1.37 6.58 -2.25 -0.01 1.36 16 12 N -0.62 -9.75 3.21 -165.19 -0.53 -10.28 16 13 C 0.53 10.75 7.67 -10.98 -0.08 10.66 16 14 O -0.53 -12.85 14.27 5.56 0.08 -12.77 16 15 C -0.12 -2.63 4.70 -27.88 -0.13 -2.76 16 16 C 0.04 1.04 4.26 -27.88 -0.12 0.93 16 17 C -0.53 -15.18 9.11 -34.44 -0.31 -15.50 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -27.77 13.29 55.43 0.74 -27.04 16 21 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.07 0.45 6.72 -51.93 -0.35 0.10 16 27 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 28 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.10 1.71 5.91 -51.93 -0.31 1.40 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.09 0.68 6.74 -51.93 -0.35 0.33 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.87 7.63 -51.93 -0.40 0.47 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.08 1.52 7.91 -51.93 -0.41 1.11 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 326.68 15.07 4.92 4.92 Total: -1.00 -33.38 326.68 -9.11 -42.49 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -7.26 Total: -3.14 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -1.07 Total: -4.48 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.76 Total: -43.91 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.08 Total: -12.77 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.38 -9.11 -42.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874829697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.719 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds