Wall clock time and date at job start Mon Mar 30 2020 01:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.45027 * 110.99824 * 2 1 4 4 C 1.52818 * 110.88084 * 179.05657 * 3 2 1 5 5 C 1.53047 * 107.98922 * 60.59488 * 4 3 2 6 6 C 1.51126 * 110.10248 * 300.00499 * 5 4 3 7 7 H 1.09004 * 106.75044 * 167.89027 * 6 5 4 8 8 C 1.45074 * 111.00094 * 227.47542 * 2 1 3 9 9 H 1.08996 * 110.77686 * 42.26917 * 8 2 1 10 10 C 1.56213 * 107.24076 * 281.05134 * 8 2 1 11 11 C 1.55093 * 101.02827 * 277.72959 * 10 8 2 12 12 N 1.46319 * 113.07045 * 285.33732 * 6 5 4 13 13 C 1.34771 * 125.94698 * 311.40488 * 12 6 5 14 14 O 1.21280 * 120.00290 * 359.97438 * 13 12 6 15 15 C 1.50707 * 119.99615 * 179.97438 * 13 12 6 16 16 C 1.53003 * 109.46955 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.46981 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00466 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99602 * 179.97438 * 17 16 15 20 20 N 1.31506 * 120.00418 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99411 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47404 * 60.00101 * 21 19 17 23 23 H 1.48507 * 109.46810 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47486 * 299.99800 * 21 19 17 25 25 H 1.09003 * 109.46979 * 63.95604 * 1 2 3 26 26 H 1.09000 * 109.46764 * 183.95461 * 1 2 3 27 27 H 1.08993 * 109.47224 * 303.95441 * 1 2 3 28 28 H 1.09002 * 109.18853 * 299.40683 * 3 2 1 29 29 H 1.09001 * 109.18872 * 58.71060 * 3 2 1 30 30 H 1.09001 * 109.76851 * 180.15278 * 4 3 2 31 31 H 1.08995 * 109.77173 * 300.94012 * 4 3 2 32 32 H 1.08997 * 109.37515 * 179.81110 * 5 4 3 33 33 H 1.09001 * 109.37279 * 60.19287 * 5 4 3 34 34 H 1.09000 * 111.10645 * 35.67089 * 10 8 2 35 35 H 1.08993 * 111.10653 * 159.78677 * 10 8 2 36 36 H 1.08991 * 110.35633 * 81.66626 * 11 10 8 37 37 H 1.09001 * 110.35246 * 203.85462 * 11 10 8 38 38 H 1.09004 * 109.46470 * 299.99227 * 15 13 12 39 39 H 1.08995 * 109.47321 * 59.99519 * 15 13 12 40 40 H 1.09001 * 109.46554 * 299.99641 * 16 15 13 41 41 H 1.08997 * 109.47327 * 59.99110 * 16 15 13 42 42 H 0.96998 * 120.00398 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9887 1.3540 0.0000 4 6 3.5167 1.3509 0.0235 5 6 4.0073 0.6278 -1.2330 6 6 3.4901 -0.7921 -1.2505 7 1 3.6802 -1.1834 -2.2499 8 6 1.9889 -0.9154 -0.9982 9 1 1.4235 -0.8369 -1.9266 10 6 1.8879 -2.3560 -0.4025 11 6 3.1699 -2.4074 0.4688 12 7 4.1865 -1.6677 -0.3074 13 6 5.5225 -1.7794 -0.1702 14 8 6.2613 -1.1169 -0.8675 15 6 6.0985 -2.7278 0.8496 16 6 7.6264 -2.6623 0.8012 17 6 8.2024 -3.6110 1.8206 18 1 7.5446 -4.2013 2.4412 19 6 9.5692 -3.7254 1.9608 20 7 10.3703 -3.0071 1.2047 21 14 10.2831 -4.9009 3.2249 22 1 9.8365 -6.2844 2.9222 23 1 11.7661 -4.8384 3.1769 24 1 9.8145 -4.5149 4.5801 25 1 -0.3633 0.4512 -0.9233 26 1 -0.3633 -1.0252 0.0709 27 1 -0.3633 0.5739 0.8524 28 1 1.6452 1.8696 -0.8968 29 1 1.6179 1.8800 0.8797 30 1 3.8874 2.3759 0.0259 31 1 3.8707 0.8280 0.9119 32 1 5.0972 0.6155 -1.2408 33 1 3.6474 1.1543 -2.1169 34 1 0.9926 -2.4658 0.2094 35 1 1.9178 -3.1092 -1.1898 36 1 2.9962 -1.9197 1.4279 37 1 3.4839 -3.4401 0.6206 38 1 5.7545 -2.4442 1.8443 39 1 5.7707 -3.7432 0.6275 40 1 7.9707 -2.9454 -0.1935 41 1 7.9538 -1.6467 1.0235 42 1 11.3319 -3.0878 1.3031 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874829697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:03 Heat of formation + Delta-G solvation = -58.390284 kcal Electronic energy + Delta-G solvation = -21175.273853 eV Core-core repulsion = 18153.756843 eV Total energy + Delta-G solvation = -3021.517010 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.79104 -39.65119 -36.77289 -35.61744 -34.74133 -33.16560 -31.65124 -30.07699 -27.73516 -27.27721 -24.86070 -24.31320 -23.23005 -22.53395 -20.56738 -19.45652 -18.62705 -17.62204 -17.32799 -16.73256 -16.50053 -16.43896 -15.94990 -15.70054 -15.18164 -14.56014 -14.46845 -14.23665 -14.01880 -13.97951 -13.59529 -13.21585 -13.04454 -12.99833 -12.77878 -12.56589 -12.52048 -12.46877 -12.21880 -11.95071 -11.89207 -11.61385 -11.46532 -11.37968 -11.28385 -10.56307 -10.52815 -9.55847 -9.03285 -8.17912 -6.32528 1.41812 1.46894 1.54576 1.70215 2.04916 2.43676 2.88998 3.14713 3.35512 3.61233 3.85984 3.99844 3.99986 4.04635 4.22126 4.39033 4.44385 4.47827 4.50873 4.54643 4.61409 4.70317 4.76814 4.82326 4.84623 4.91032 4.96220 5.02678 5.04547 5.17133 5.21304 5.25281 5.28610 5.47297 5.60372 5.61503 5.83891 6.17014 6.23394 6.37207 6.57700 6.85470 7.28852 7.37840 8.94725 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.034801 B = 0.004191 C = 0.004000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.389478 B = 6679.069737 C = 6999.145084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.575 5.575 3 C 0.085 3.915 4 C -0.112 4.112 5 C -0.138 4.138 6 C 0.139 3.861 7 H 0.048 0.952 8 C 0.103 3.897 9 H 0.080 0.920 10 C -0.113 4.113 11 C 0.101 3.899 12 N -0.610 5.610 13 C 0.524 3.476 14 O -0.586 6.586 15 C -0.110 4.110 16 C 0.046 3.954 17 C -0.545 4.545 18 H 0.075 0.925 19 C -0.006 4.006 20 N -0.938 5.938 21 Si 0.975 3.025 22 H -0.261 1.261 23 H -0.287 1.287 24 H -0.262 1.262 25 H 0.028 0.972 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.035 0.965 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.100 0.900 40 H -0.018 1.018 41 H -0.020 1.020 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.646 4.241 -1.927 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.301 5.301 3 C -0.043 4.043 4 C -0.150 4.150 5 C -0.177 4.177 6 C 0.035 3.965 7 H 0.066 0.934 8 C -0.006 4.006 9 H 0.097 0.903 10 C -0.152 4.152 11 C -0.021 4.021 12 N -0.344 5.344 13 C 0.315 3.685 14 O -0.466 6.466 15 C -0.150 4.150 16 C 0.008 3.992 17 C -0.582 4.582 18 H 0.093 0.907 19 C -0.203 4.203 20 N -0.578 5.578 21 Si 0.799 3.201 22 H -0.186 1.186 23 H -0.212 1.212 24 H -0.187 1.187 25 H 0.047 0.953 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.118 0.882 40 H 0.000 1.000 41 H -0.002 1.002 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -24.862 4.444 -1.950 25.331 hybrid contribution 1.072 0.153 -0.483 1.186 sum -23.790 4.597 -2.433 24.352 Atomic orbital electron populations 1.22331 0.84305 1.03315 1.00960 1.58558 1.08706 1.11523 1.51292 1.21415 0.93406 0.88256 1.01195 1.21459 0.96329 1.00230 0.96967 1.21484 1.01495 0.95220 0.99471 1.20712 0.92307 0.91032 0.92413 0.93426 1.21909 0.90979 0.93679 0.94002 0.90277 1.23188 0.97523 0.94808 0.99633 1.22564 0.87315 0.96627 0.95547 1.48504 1.04399 1.42097 1.39435 1.20982 0.80670 0.82927 0.83961 1.90606 1.59837 1.48040 1.48147 1.21567 0.97270 0.98607 0.97514 1.18659 0.90281 0.95038 0.95198 1.21661 0.92431 1.23934 1.20205 0.90684 1.26150 0.97832 0.97905 0.98463 1.70173 1.03875 1.42354 1.41380 0.85353 0.76740 0.79063 0.78966 1.18589 1.21237 1.18662 0.95308 0.89957 0.90656 0.94709 0.89614 0.90707 0.93591 0.93075 0.90122 0.86964 0.89518 0.90758 0.89916 0.88633 0.88228 1.00006 1.00161 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 9.37 127.69 1.20 1.60 16 2 N -0.57 -9.63 4.09 -900.79 -3.69 -13.31 16 3 C 0.08 1.51 5.47 86.59 0.47 1.99 16 4 C -0.11 -2.76 6.18 30.55 0.19 -2.57 16 5 C -0.14 -3.98 5.45 30.00 0.16 -3.81 16 6 C 0.14 3.77 2.62 44.32 0.12 3.88 16 7 H 0.05 1.38 8.12 -2.38 -0.02 1.36 16 8 C 0.10 1.86 2.93 46.28 0.14 2.00 16 9 H 0.08 1.19 8.00 -2.39 -0.02 1.17 16 10 C -0.11 -1.73 6.50 32.43 0.21 -1.52 16 11 C 0.10 2.25 6.58 86.86 0.57 2.82 16 12 N -0.61 -19.20 3.21 -794.93 -2.55 -21.75 16 13 C 0.52 22.28 7.67 87.66 0.67 22.95 16 14 O -0.59 -30.48 14.27 -3.03 -0.04 -30.53 16 15 C -0.11 -4.78 4.70 29.85 0.14 -4.64 16 16 C 0.05 2.67 4.26 29.85 0.13 2.79 16 17 C -0.54 -31.91 9.11 25.60 0.23 -31.67 16 18 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 19 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 20 N -0.94 -60.71 13.29 21.45 0.28 -60.43 16 21 Si 0.98 45.01 29.54 68.60 2.03 47.04 16 22 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 23 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 24 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 25 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 26 H 0.08 0.66 6.72 -2.39 -0.02 0.65 16 27 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 28 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.09 1.33 8.13 -2.39 -0.02 1.31 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.05 1.96 5.91 -2.39 -0.01 1.94 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.11 1.21 6.74 -2.39 -0.02 1.19 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.72 7.63 -2.39 -0.02 1.70 16 38 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 39 H 0.10 3.85 7.91 -2.39 -0.02 3.83 16 40 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 41 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 42 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -77.69 326.68 1.69 -76.00 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 0.97 Total: 9.08 kcal Atomic # 6 Polarization: -10.78 SS G_CDS: 4.69 Total: -6.09 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -5.96 Total: -95.50 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -0.04 Total: -30.53 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -77.69 1.69 -76.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874829697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.606 kcal (2) G-P(sol) polarization free energy of solvation -77.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds