Wall clock time and date at job start Mon Mar 30 2020 00:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 109.46936 * 2 1 4 4 C 1.46895 * 111.00191 * 297.33336 * 3 2 1 5 5 C 1.50699 * 109.47101 * 292.72169 * 4 3 2 6 6 H 1.08002 * 120.00304 * 355.02692 * 5 4 3 7 7 C 1.37877 * 120.00080 * 175.02376 * 5 4 3 8 8 N 1.31512 * 120.00179 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00229 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47257 * 59.99888 * 9 7 5 11 11 H 1.48496 * 109.47521 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47036 * 299.99969 * 9 7 5 13 13 C 1.46906 * 110.99602 * 61.28778 * 3 2 1 14 14 C 1.53001 * 109.47135 * 66.04367 * 13 3 2 15 15 H 1.08995 * 109.46906 * 304.99927 * 14 13 3 16 16 O 1.42897 * 109.46986 * 65.00125 * 14 13 3 17 17 C 1.53002 * 109.47036 * 184.99891 * 14 13 3 18 18 C 1.52995 * 109.46924 * 174.99910 * 17 14 13 19 19 C 1.47203 * 112.84981 * 50.33690 * 18 17 14 20 20 N 6.00340 * 123.37925 * 76.15984 * 2 1 3 21 21 C 1.53773 * 113.61577 * 279.13513 * 18 17 14 22 22 C 1.53955 * 87.02368 * 220.05297 * 21 18 17 23 23 C 1.53780 * 87.10830 * 25.36264 * 22 21 18 24 24 H 1.09003 * 109.47361 * 179.43363 * 1 2 3 25 25 H 1.09005 * 109.47603 * 299.43470 * 1 2 3 26 26 H 1.08999 * 109.47423 * 59.43600 * 1 2 3 27 27 H 1.09003 * 109.46894 * 240.00464 * 2 1 3 28 28 H 1.08994 * 109.47308 * 120.00410 * 2 1 3 29 29 H 1.09001 * 109.47636 * 52.72274 * 4 3 2 30 30 H 1.08997 * 109.46918 * 172.72412 * 4 3 2 31 31 H 0.97004 * 120.00357 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.46731 * 306.04528 * 13 3 2 33 33 H 1.09000 * 109.46520 * 186.04452 * 13 3 2 34 34 H 0.96693 * 114.00508 * 59.99760 * 16 14 13 35 35 H 1.09003 * 109.46701 * 295.00484 * 17 14 13 36 36 H 1.09005 * 109.46979 * 54.99771 * 17 14 13 37 37 H 1.09000 * 113.61929 * 334.57066 * 21 18 17 38 38 H 1.09001 * 113.61504 * 105.47454 * 21 18 17 39 39 H 1.09004 * 113.53426 * 270.81514 * 22 21 18 40 40 H 1.08993 * 113.74813 * 139.94539 * 22 21 18 41 41 H 1.09003 * 113.61583 * 220.09476 * 23 22 21 42 42 H 1.08996 * 113.68905 * 89.20536 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6014 2.0913 -1.2183 5 6 2.3001 1.4918 -2.4113 6 1 3.0457 0.7233 -2.2706 7 6 1.9875 1.9245 -3.6826 8 7 1.0799 2.8607 -3.8540 9 14 2.8531 1.1809 -5.1616 10 1 2.5914 -0.2802 -5.2054 11 1 2.3418 1.8133 -6.4040 12 1 4.3148 1.4189 -5.0509 13 6 1.5738 2.1009 1.2029 14 6 2.2318 1.4822 2.4378 15 1 2.0205 0.4132 2.4649 16 8 3.6447 1.6871 2.3778 17 6 1.6735 2.1446 3.6990 18 6 2.2372 1.4424 4.9359 19 6 3.7023 1.3052 4.8974 20 7 4.8329 1.1992 4.8676 21 6 1.5053 0.1374 5.2906 22 6 1.6349 0.5597 6.7654 23 6 1.7065 2.0112 6.2625 24 1 -0.3634 -1.0276 -0.0102 25 1 -0.3634 0.5050 0.8950 26 1 -0.3634 0.5226 -0.8849 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.5228 1.9944 -1.3424 30 1 1.8643 3.1458 -1.1352 31 1 0.8597 3.1648 -4.7484 32 1 0.4902 2.0233 1.2912 33 1 1.8580 3.1505 1.1272 34 1 3.9065 2.6176 2.3511 35 1 1.9613 3.1958 3.7150 36 1 0.5863 2.0655 3.7001 37 1 0.4755 0.1037 4.9350 38 1 2.0697 -0.7613 5.0417 39 1 2.5550 0.2153 7.2376 40 1 0.7479 0.3476 7.3623 41 1 2.4331 2.6232 6.7969 42 1 0.7324 2.4921 6.1729 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886030541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:03 Heat of formation + Delta-G solvation = -2.981253 kcal Electronic energy + Delta-G solvation = -20790.400624 eV Core-core repulsion = 17771.286330 eV Total energy + Delta-G solvation = -3019.114294 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.22973 -37.95948 -35.93013 -35.50510 -32.59287 -31.38992 -29.51786 -28.12437 -26.13645 -25.70599 -23.74043 -23.18390 -21.60167 -20.99348 -19.28470 -16.90660 -16.29822 -16.04114 -15.80467 -15.21822 -14.89892 -14.76576 -14.44091 -14.17428 -13.74937 -13.52822 -12.88549 -12.82186 -12.70657 -12.54175 -12.12989 -11.96414 -11.80450 -11.53027 -11.42147 -11.16867 -11.09478 -11.06146 -10.79908 -10.76853 -10.66305 -10.50791 -10.27452 -10.05596 -9.83338 -9.48159 -9.06699 -8.40471 -7.10041 -6.00442 -4.00911 2.83538 2.96853 3.35554 3.39118 3.43108 3.80530 4.20391 4.27121 4.41288 4.49204 4.54825 4.74322 4.98725 5.11086 5.22425 5.34051 5.36163 5.38820 5.40915 5.57288 5.60745 5.66301 5.70684 5.77891 5.81434 5.85354 5.99970 6.00943 6.03344 6.18506 6.40179 6.45863 6.70240 6.91919 7.31932 7.44247 7.77805 7.84383 7.97241 8.14670 8.23987 8.59741 9.07592 9.63255 11.10146 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.034237 B = 0.004083 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.628867 B = 6856.066376 C = 7112.504303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.060 3.940 3 N -0.525 5.525 4 C 0.189 3.811 5 C -0.503 4.503 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.901 5.901 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.021 3.979 14 C 0.107 3.893 15 H 0.098 0.902 16 O -0.542 6.542 17 C -0.135 4.135 18 C 0.013 3.987 19 C 0.236 3.764 20 N -0.424 5.424 21 C -0.122 4.122 22 C -0.144 4.144 23 C -0.121 4.121 24 H 0.046 0.954 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.002 0.998 30 H 0.022 0.978 31 H 0.261 0.739 32 H 0.035 0.965 33 H 0.067 0.933 34 H 0.367 0.633 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.490 -2.149 19.764 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.069 4.069 3 N -0.248 5.248 4 C 0.064 3.936 5 C -0.542 4.542 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.202 1.202 13 C -0.108 4.108 14 C 0.047 3.953 15 H 0.116 0.884 16 O -0.345 6.345 17 C -0.174 4.174 18 C 0.009 3.991 19 C -0.082 4.082 20 N -0.099 5.099 21 C -0.161 4.161 22 C -0.182 4.182 23 C -0.160 4.160 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.019 0.981 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.213 0.787 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.322 -2.862 19.563 19.907 hybrid contribution -1.041 0.430 -1.069 1.552 sum -3.362 -2.431 18.494 18.954 Atomic orbital electron populations 1.22406 0.99629 1.00956 1.01861 1.21985 0.91741 0.91734 1.01396 1.62258 1.58903 1.01592 1.02029 1.19774 0.94662 0.93604 0.85532 1.21129 1.21562 1.21353 0.90129 0.91983 1.24970 0.95333 0.95286 0.99004 1.69944 1.32362 1.29437 1.22375 0.86587 0.80013 0.79270 0.81706 1.20303 1.21430 1.20193 1.22760 0.97290 0.98572 0.92152 1.21989 0.81575 1.00379 0.91341 0.88430 1.86651 1.21235 1.30332 1.96323 1.22375 1.01569 1.00274 0.93185 1.19046 0.83150 0.99665 0.97218 1.27882 0.93707 0.93956 0.92695 1.81151 1.12521 1.07427 1.08795 1.23084 1.01055 0.95963 0.95967 1.22930 1.02628 0.96065 0.96562 1.23024 1.02063 0.97207 0.93696 0.93449 0.93755 0.91348 0.90173 0.92973 0.98060 0.96001 0.92970 0.94673 0.91424 0.78675 0.90549 0.89148 0.88134 0.90617 0.90188 0.90535 0.90829 0.88181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.25 9.26 37.16 0.34 -2.91 16 2 C 0.06 1.14 5.68 -3.82 -0.02 1.12 16 3 N -0.52 -10.97 4.64 -236.07 -1.10 -12.07 16 4 C 0.19 4.82 4.54 -4.98 -0.02 4.80 16 5 C -0.50 -14.15 8.39 -34.44 -0.29 -14.44 16 6 H 0.06 1.76 7.39 -52.49 -0.39 1.37 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 9 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.02 0.35 4.37 -3.82 -0.02 0.33 16 14 C 0.11 1.42 2.78 -26.73 -0.07 1.35 16 15 H 0.10 1.36 6.26 -51.93 -0.33 1.04 16 16 O -0.54 -8.54 10.61 -35.23 -0.37 -8.91 16 17 C -0.13 -1.24 4.50 -26.73 -0.12 -1.36 16 18 C 0.01 0.11 0.94 -156.49 -0.15 -0.03 16 19 C 0.24 2.99 11.59 -20.76 -0.24 2.75 16 20 N -0.42 -6.66 18.25 42.15 0.77 -5.89 16 21 C -0.12 -0.90 7.15 -25.83 -0.18 -1.09 16 22 C -0.14 -0.92 7.80 -25.83 -0.20 -1.12 16 23 C -0.12 -0.78 7.21 -25.92 -0.19 -0.96 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.04 0.66 6.33 -51.93 -0.33 0.34 16 26 H 0.07 1.38 6.29 -51.93 -0.33 1.06 16 27 H 0.08 1.72 6.98 -51.93 -0.36 1.36 16 28 H 0.05 0.89 6.31 -51.93 -0.33 0.56 16 29 H 0.00 0.05 6.02 -51.93 -0.31 -0.27 16 30 H 0.02 0.60 7.91 -51.93 -0.41 0.19 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.04 0.54 6.05 -51.93 -0.31 0.23 16 33 H 0.07 1.11 7.92 -51.93 -0.41 0.70 16 34 H 0.37 5.04 9.04 45.56 0.41 5.45 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.09 0.67 7.98 -51.93 -0.41 0.25 16 37 H 0.10 0.59 7.99 -51.93 -0.41 0.18 16 38 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 42 H 0.10 0.47 8.10 -51.93 -0.42 0.05 16 LS Contribution 334.92 15.07 5.05 5.05 Total: -1.00 -32.49 334.92 -7.21 -39.70 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.01 Total: 1.29 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -1.26 Total: -10.09 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.41 Total: -43.89 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: -0.37 Total: -8.91 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.49 -7.21 -39.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886030541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.714 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds