Wall clock time and date at job start Mon Mar 30 2020 00:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46906 * 109.46936 * 2 1 4 4 C 1.46895 * 111.00191 * 297.33336 * 3 2 1 5 5 C 1.50699 * 109.47101 * 292.72169 * 4 3 2 6 6 H 1.08002 * 120.00304 * 355.02692 * 5 4 3 7 7 C 1.37877 * 120.00080 * 175.02376 * 5 4 3 8 8 N 1.31512 * 120.00179 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00229 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47257 * 59.99888 * 9 7 5 11 11 H 1.48496 * 109.47521 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47036 * 299.99969 * 9 7 5 13 13 C 1.46906 * 110.99602 * 61.28778 * 3 2 1 14 14 C 1.53001 * 109.47135 * 66.04367 * 13 3 2 15 15 H 1.08995 * 109.46906 * 304.99927 * 14 13 3 16 16 O 1.42897 * 109.46986 * 65.00125 * 14 13 3 17 17 C 1.53002 * 109.47036 * 184.99891 * 14 13 3 18 18 C 1.52995 * 109.46924 * 174.99910 * 17 14 13 19 19 C 1.47203 * 112.84981 * 50.33690 * 18 17 14 20 20 N 6.00340 * 123.37925 * 76.15984 * 2 1 3 21 21 C 1.53773 * 113.61577 * 279.13513 * 18 17 14 22 22 C 1.53955 * 87.02368 * 220.05297 * 21 18 17 23 23 C 1.53780 * 87.10830 * 25.36264 * 22 21 18 24 24 H 1.09003 * 109.47361 * 179.43363 * 1 2 3 25 25 H 1.09005 * 109.47603 * 299.43470 * 1 2 3 26 26 H 1.08999 * 109.47423 * 59.43600 * 1 2 3 27 27 H 1.09003 * 109.46894 * 240.00464 * 2 1 3 28 28 H 1.08994 * 109.47308 * 120.00410 * 2 1 3 29 29 H 1.09001 * 109.47636 * 52.72274 * 4 3 2 30 30 H 1.08997 * 109.46918 * 172.72412 * 4 3 2 31 31 H 0.97004 * 120.00357 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.46731 * 306.04528 * 13 3 2 33 33 H 1.09000 * 109.46520 * 186.04452 * 13 3 2 34 34 H 0.96693 * 114.00508 * 59.99760 * 16 14 13 35 35 H 1.09003 * 109.46701 * 295.00484 * 17 14 13 36 36 H 1.09005 * 109.46979 * 54.99771 * 17 14 13 37 37 H 1.09000 * 113.61929 * 334.57066 * 21 18 17 38 38 H 1.09001 * 113.61504 * 105.47454 * 21 18 17 39 39 H 1.09004 * 113.53426 * 270.81514 * 22 21 18 40 40 H 1.08993 * 113.74813 * 139.94539 * 22 21 18 41 41 H 1.09003 * 113.61583 * 220.09476 * 23 22 21 42 42 H 1.08996 * 113.68905 * 89.20536 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6014 2.0913 -1.2183 5 6 2.3001 1.4918 -2.4113 6 1 3.0457 0.7233 -2.2706 7 6 1.9875 1.9245 -3.6826 8 7 1.0799 2.8607 -3.8540 9 14 2.8531 1.1809 -5.1616 10 1 2.5914 -0.2802 -5.2054 11 1 2.3418 1.8133 -6.4040 12 1 4.3148 1.4189 -5.0509 13 6 1.5738 2.1009 1.2029 14 6 2.2318 1.4822 2.4378 15 1 2.0205 0.4132 2.4649 16 8 3.6447 1.6871 2.3778 17 6 1.6735 2.1446 3.6990 18 6 2.2372 1.4424 4.9359 19 6 3.7023 1.3052 4.8974 20 7 4.8329 1.1992 4.8676 21 6 1.5053 0.1374 5.2906 22 6 1.6349 0.5597 6.7654 23 6 1.7065 2.0112 6.2625 24 1 -0.3634 -1.0276 -0.0102 25 1 -0.3634 0.5050 0.8950 26 1 -0.3634 0.5226 -0.8849 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.5228 1.9944 -1.3424 30 1 1.8643 3.1458 -1.1352 31 1 0.8597 3.1648 -4.7484 32 1 0.4902 2.0233 1.2912 33 1 1.8580 3.1505 1.1272 34 1 3.9065 2.6176 2.3511 35 1 1.9613 3.1958 3.7150 36 1 0.5863 2.0655 3.7001 37 1 0.4755 0.1037 4.9350 38 1 2.0697 -0.7613 5.0417 39 1 2.5550 0.2153 7.2376 40 1 0.7479 0.3476 7.3623 41 1 2.4331 2.6232 6.7969 42 1 0.7324 2.4921 6.1729 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886030541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:02 Heat of formation + Delta-G solvation = -26.195777 kcal Electronic energy + Delta-G solvation = -20791.407282 eV Core-core repulsion = 17771.286330 eV Total energy + Delta-G solvation = -3020.120952 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.97261 -39.29158 -37.22938 -36.57869 -34.70064 -32.39370 -31.04815 -29.64355 -27.28880 -26.57678 -25.10736 -24.65191 -22.74914 -21.74487 -20.82548 -18.38390 -17.71902 -17.26946 -16.88247 -16.60393 -16.29813 -15.92474 -15.62944 -15.31408 -14.91292 -14.62666 -14.54971 -14.00570 -13.70852 -13.56092 -13.43931 -13.14400 -13.10774 -12.84574 -12.73878 -12.67393 -12.51107 -12.45966 -12.19772 -11.99016 -11.69954 -11.65373 -11.46020 -11.36205 -11.32509 -11.04057 -10.58496 -10.44294 -8.77013 -8.18338 -6.27150 1.39092 1.41627 1.49522 1.91560 2.02495 2.40250 3.02508 3.13501 3.23072 3.61641 3.67007 3.75889 3.90738 4.00566 4.16585 4.26374 4.34512 4.48993 4.50609 4.63577 4.67653 4.74381 4.81461 4.93101 4.96317 5.00752 5.04721 5.10307 5.13826 5.17756 5.22673 5.26095 5.36364 5.42476 5.52323 5.55131 5.69537 6.12310 6.43332 6.73847 6.83339 6.89245 6.94004 7.42147 8.91224 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.034237 B = 0.004083 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.628867 B = 6856.066376 C = 7112.504303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.061 3.939 3 N -0.541 5.541 4 C 0.206 3.794 5 C -0.520 4.520 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.932 5.932 9 Si 0.961 3.039 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.022 3.978 14 C 0.113 3.887 15 H 0.095 0.905 16 O -0.566 6.566 17 C -0.124 4.124 18 C 0.002 3.998 19 C 0.255 3.745 20 N -0.489 5.489 21 C -0.120 4.120 22 C -0.142 4.142 23 C -0.109 4.109 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.030 0.970 27 H 0.048 0.952 28 H 0.077 0.923 29 H -0.017 1.017 30 H -0.006 1.006 31 H 0.264 0.736 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.372 0.628 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.057 -2.654 21.245 22.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.068 4.068 3 N -0.264 5.264 4 C 0.080 3.920 5 C -0.559 4.559 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.573 5.573 9 Si 0.786 3.214 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.199 1.199 13 C -0.106 4.106 14 C 0.054 3.946 15 H 0.112 0.888 16 O -0.371 6.371 17 C -0.162 4.162 18 C -0.001 4.001 19 C -0.062 4.062 20 N -0.165 5.165 21 C -0.159 4.159 22 C -0.179 4.179 23 C -0.147 4.147 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.049 0.951 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.001 0.999 30 H 0.012 0.988 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.220 0.780 35 H 0.103 0.897 36 H 0.140 0.860 37 H 0.144 0.856 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.117 0.883 41 H 0.087 0.913 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.889 -3.374 21.069 21.689 hybrid contribution -0.561 0.581 -1.484 1.689 sum -4.450 -2.793 19.585 20.278 Atomic orbital electron populations 1.22274 0.97813 1.02323 1.01271 1.21960 0.93248 0.90515 1.01026 1.62123 1.59825 1.02489 1.01996 1.19385 0.93127 0.92274 0.87234 1.21424 1.21578 1.21241 0.91620 0.92943 1.25792 0.95975 0.95629 1.01881 1.70052 1.33568 1.30551 1.23133 0.85569 0.78791 0.78809 0.78248 1.19385 1.20599 1.19903 1.22878 0.98445 0.98017 0.91308 1.22001 0.80388 1.00356 0.91836 0.88761 1.86630 1.22920 1.31056 1.96479 1.22314 1.03128 1.00203 0.90602 1.19387 0.80718 1.01500 0.98535 1.28723 0.94623 0.92033 0.90799 1.81156 1.14682 1.09710 1.10959 1.23191 1.01816 0.94226 0.96623 1.22914 1.02946 0.95889 0.96181 1.23079 1.03099 0.97271 0.91263 0.91042 0.91069 0.95097 0.93364 0.90465 0.99914 0.98800 0.92767 0.93123 0.92077 0.78043 0.89714 0.85967 0.85553 0.92215 0.91709 0.88342 0.91264 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.84 9.26 71.98 0.67 -5.17 16 2 C 0.06 2.28 5.68 86.30 0.49 2.77 16 3 N -0.54 -22.77 4.64 -900.79 -4.18 -26.95 16 4 C 0.21 10.83 4.54 85.56 0.39 11.22 16 5 C -0.52 -30.04 8.39 25.60 0.21 -29.82 16 6 H 0.05 3.06 7.39 -2.91 -0.02 3.04 16 7 C 0.01 0.30 5.46 84.65 0.46 0.76 16 8 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 9 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 13 C 0.02 0.68 4.37 86.30 0.38 1.06 16 14 C 0.11 2.79 2.78 30.60 0.09 2.88 16 15 H 0.09 2.40 6.26 -2.39 -0.01 2.38 16 16 O -0.57 -17.62 10.61 -148.98 -1.58 -19.20 16 17 C -0.12 -1.84 4.50 30.59 0.14 -1.70 16 18 C 0.00 0.03 0.94 -53.46 -0.05 -0.02 16 19 C 0.25 6.28 11.59 89.44 1.04 7.32 16 20 N -0.49 -15.62 18.25 20.01 0.37 -15.25 16 21 C -0.12 -1.38 7.15 31.18 0.22 -1.15 16 22 C -0.14 -1.34 7.80 31.18 0.24 -1.10 16 23 C -0.11 -0.98 7.21 31.12 0.22 -0.76 16 24 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.07 1.92 6.33 -2.38 -0.02 1.91 16 26 H 0.03 1.24 6.29 -2.39 -0.02 1.22 16 27 H 0.05 2.10 6.98 -2.39 -0.02 2.08 16 28 H 0.08 2.52 6.31 -2.39 -0.02 2.50 16 29 H -0.02 -0.93 6.02 -2.39 -0.01 -0.94 16 30 H -0.01 -0.35 7.91 -2.39 -0.02 -0.37 16 31 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 32 H 0.05 1.44 6.05 -2.39 -0.01 1.42 16 33 H 0.06 1.98 7.92 -2.39 -0.02 1.96 16 34 H 0.37 10.29 9.04 -74.06 -0.67 9.62 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.12 1.13 7.98 -2.38 -0.02 1.11 16 37 H 0.13 0.84 7.99 -2.39 -0.02 0.82 16 38 H 0.06 0.89 8.08 -2.39 -0.02 0.87 16 39 H 0.06 0.82 8.13 -2.38 -0.02 0.80 16 40 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 42 H 0.13 0.49 8.10 -2.39 -0.02 0.47 16 Total: -1.00 -73.55 334.92 1.76 -71.80 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.34 Total: 11.83 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 4.50 Total: -13.71 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -3.53 Total: -98.05 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -1.58 Total: -19.20 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -73.55 1.76 -71.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886030541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.604 kcal (2) G-P(sol) polarization free energy of solvation -73.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds