Wall clock time and date at job start Mon Mar 30 2020 01:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48529 * 111.00167 * 2 1 4 4 C 1.54937 * 103.22947 * 159.71718 * 3 2 1 5 5 C 1.54599 * 102.91875 * 322.58399 * 4 3 2 6 6 C 1.47904 * 110.99787 * 117.39481 * 2 1 3 7 7 H 1.09004 * 110.07933 * 333.60131 * 6 2 1 8 8 C 1.50693 * 109.91902 * 94.80184 * 6 2 1 9 9 O 1.21284 * 119.99860 * 17.59041 * 8 6 2 10 10 N 1.34778 * 120.00240 * 197.58990 * 8 6 2 11 11 C 1.46503 * 119.99946 * 179.97438 * 10 8 6 12 12 H 1.09002 * 110.01968 * 325.70269 * 11 10 8 13 13 C 1.54266 * 110.07197 * 87.12181 * 11 10 8 14 14 C 1.54894 * 104.19690 * 95.69521 * 13 11 10 15 15 C 1.54884 * 102.74702 * 37.94277 * 14 13 11 16 16 H 1.08994 * 110.48963 * 80.73665 * 15 14 13 17 17 C 1.50694 * 110.59825 * 203.32395 * 15 14 13 18 18 H 1.08005 * 120.00342 * 114.83794 * 17 15 14 19 19 C 1.37878 * 120.00264 * 294.84157 * 17 15 14 20 20 N 1.31512 * 120.00317 * 180.02562 * 19 17 15 21 21 Si 1.86797 * 119.99818 * 0.02562 * 19 17 15 22 22 H 1.48497 * 109.47279 * 89.99835 * 21 19 17 23 23 H 1.48494 * 109.47239 * 210.00074 * 21 19 17 24 24 H 1.48504 * 109.47096 * 329.99770 * 21 19 17 25 25 C 1.53873 * 110.03247 * 204.31155 * 11 10 8 26 26 H 1.08997 * 109.47260 * 302.61009 * 1 2 3 27 27 H 1.09007 * 109.46753 * 62.60500 * 1 2 3 28 28 H 1.08996 * 109.47680 * 182.60238 * 1 2 3 29 29 H 1.09001 * 110.66927 * 41.28100 * 3 2 1 30 30 H 1.08998 * 110.67187 * 278.15260 * 3 2 1 31 31 H 1.09004 * 110.72788 * 204.22906 * 4 3 2 32 32 H 1.08992 * 110.72435 * 80.94200 * 4 3 2 33 33 H 1.08993 * 110.31194 * 263.03791 * 5 4 3 34 34 H 1.08999 * 110.38659 * 140.91452 * 5 4 3 35 35 H 0.97000 * 120.00222 * 0.02562 * 10 8 6 36 36 H 1.08998 * 110.48638 * 214.37659 * 13 11 10 37 37 H 1.09001 * 110.48707 * 337.01745 * 13 11 10 38 38 H 1.09004 * 110.75571 * 279.62799 * 14 13 11 39 39 H 1.08991 * 110.91507 * 156.33313 * 14 13 11 40 40 H 0.97002 * 120.00433 * 180.02562 * 20 19 17 41 41 H 1.09002 * 110.03049 * 359.94889 * 25 11 10 42 42 H 1.08995 * 110.03495 * 121.33751 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4491 1.2106 0.5228 5 6 3.2981 0.1054 1.5932 6 6 1.9990 -0.6353 1.2260 7 1 1.2769 -0.5432 2.0374 8 6 2.2937 -2.0898 0.9642 9 8 2.3969 -2.4921 -0.1753 10 7 2.4425 -2.9437 1.9963 11 6 2.7285 -4.3578 1.7417 12 1 2.2228 -4.6829 0.8325 13 6 4.2498 -4.5743 1.6066 14 6 4.6975 -5.0186 3.0213 15 6 3.5245 -5.9178 3.4842 16 1 3.6180 -6.9165 3.0577 17 6 3.4742 -5.9909 4.9886 18 1 2.6308 -5.5771 5.5215 19 6 4.5048 -6.5859 5.6848 20 7 4.4607 -6.6501 6.9976 21 14 5.9640 -7.3008 4.7634 22 1 7.0072 -6.2565 4.6015 23 1 6.5221 -8.4434 5.5302 24 1 5.5225 -7.7710 3.4257 25 6 2.2672 -5.2120 2.9356 26 1 -0.3633 0.5538 0.8656 27 1 -0.3633 0.4729 -0.9125 28 1 -0.3634 -1.0265 0.0467 29 1 1.4237 2.0205 0.6728 30 1 2.0042 1.7977 -1.0095 31 1 3.8123 2.1352 0.9717 32 1 4.1115 0.8835 -0.2785 33 1 3.2134 0.5486 2.5854 34 1 4.1466 -0.5778 1.5559 35 1 2.3596 -2.6221 2.9077 36 1 4.4606 -5.3560 0.8767 37 1 4.7440 -3.6446 1.3245 38 1 4.8071 -4.1571 3.6801 39 1 5.6257 -5.5879 2.9748 40 1 5.1860 -7.0683 7.4875 41 1 1.8315 -4.5744 3.7047 42 1 1.5372 -5.9512 2.6059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897889746.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:42 Heat of formation + Delta-G solvation = -38.351545 kcal Electronic energy + Delta-G solvation = -20912.184654 eV Core-core repulsion = 17891.536589 eV Total energy + Delta-G solvation = -3020.648065 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.19744 -38.41440 -36.88732 -33.57326 -32.41026 -32.03600 -29.78753 -28.43553 -27.41352 -25.84105 -23.70085 -22.38915 -21.37566 -20.20973 -19.58070 -19.05689 -17.24281 -16.98270 -16.18631 -15.73235 -15.08318 -14.92881 -14.30871 -14.19003 -13.93528 -13.79935 -13.32930 -12.87158 -12.68529 -12.51074 -12.35047 -12.12516 -11.76879 -11.59051 -11.39271 -11.24704 -11.14552 -10.95304 -10.92117 -10.54943 -10.18831 -9.93655 -9.76343 -9.47447 -9.44308 -9.02676 -8.63123 -8.55162 -8.54470 -6.09097 -4.07989 2.88978 3.25110 3.28613 3.38184 3.40335 3.99543 4.41569 4.42558 4.45708 4.70681 4.97236 5.03280 5.18667 5.19540 5.20096 5.30149 5.37913 5.45562 5.49211 5.57250 5.64578 5.65012 5.71928 5.85177 5.96064 6.13782 6.16496 6.33803 6.42753 6.53989 6.56234 6.60221 6.72097 6.77670 6.86971 7.09617 7.11420 7.50598 7.75952 7.88214 8.49972 8.57573 8.93827 9.54337 11.04018 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033322 B = 0.004301 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.088478 B = 6508.363012 C = 6600.194230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.498 5.498 3 C 0.036 3.964 4 C -0.122 4.122 5 C -0.121 4.121 6 C 0.047 3.953 7 H 0.073 0.927 8 C 0.517 3.483 9 O -0.524 6.524 10 N -0.719 5.719 11 C 0.142 3.858 12 H 0.079 0.921 13 C -0.132 4.132 14 C -0.127 4.127 15 C 0.011 3.989 16 H 0.034 0.966 17 C -0.510 4.510 18 H 0.073 0.927 19 C 0.071 3.929 20 N -0.903 5.903 21 Si 0.880 3.120 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.264 1.264 25 C -0.112 4.112 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.399 0.601 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.045 0.955 40 H 0.263 0.737 41 H 0.068 0.932 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.566 15.232 -11.053 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.222 5.222 3 C -0.092 4.092 4 C -0.160 4.160 5 C -0.159 4.159 6 C -0.066 4.066 7 H 0.091 0.909 8 C 0.301 3.699 9 O -0.399 6.399 10 N -0.371 5.371 11 C 0.038 3.962 12 H 0.097 0.903 13 C -0.170 4.170 14 C -0.165 4.165 15 C -0.008 4.008 16 H 0.052 0.948 17 C -0.548 4.548 18 H 0.091 0.909 19 C -0.130 4.130 20 N -0.541 5.541 21 Si 0.709 3.291 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.189 1.189 25 C -0.150 4.150 26 H 0.046 0.954 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.234 0.766 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.264 14.569 -12.199 19.475 hybrid contribution 0.515 0.143 0.904 1.050 sum -3.749 14.712 -11.296 18.923 Atomic orbital electron populations 1.22532 0.87370 1.02347 1.00836 1.64341 1.08151 1.14312 1.35397 1.23269 0.95114 0.89425 1.01368 1.22481 0.96726 0.98262 0.98520 1.22349 0.96354 0.97758 0.99446 1.22387 0.98119 0.93348 0.92718 0.90905 1.20305 0.77096 0.87107 0.85404 1.90666 1.49403 1.78112 1.21722 1.46305 1.72360 1.09396 1.09071 1.21700 0.95769 0.79496 0.99284 0.90329 1.22756 0.95211 1.00427 0.98625 1.22915 0.99161 1.00371 0.94054 1.19980 0.89935 0.94190 0.96716 0.94833 1.21050 1.06835 1.38060 0.88813 0.90917 1.24990 0.98130 0.95306 0.94617 1.69900 1.33145 1.44842 1.06249 0.86901 0.83226 0.78775 0.80204 1.20423 1.22175 1.18886 1.22417 0.99479 0.97971 0.95116 0.95378 0.90949 0.91209 0.93601 0.89690 0.90656 0.90392 0.90324 0.90243 0.76645 0.91820 0.92564 0.91586 0.93631 0.92709 0.91334 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.40 60.06 0.56 0.74 16 2 N -0.50 -5.99 4.75 -232.17 -1.10 -7.10 16 3 C 0.04 0.33 6.56 -1.90 -0.01 0.32 16 4 C -0.12 -1.10 7.06 -24.87 -0.18 -1.28 16 5 C -0.12 -1.23 6.56 -25.37 -0.17 -1.40 16 6 C 0.05 0.56 2.87 -67.80 -0.19 0.36 16 7 H 0.07 0.75 7.74 -51.93 -0.40 0.35 16 8 C 0.52 7.96 6.86 -10.99 -0.08 7.89 16 9 O -0.52 -10.13 16.22 5.55 0.09 -10.04 16 10 N -0.72 -10.77 5.04 -52.72 -0.27 -11.04 16 11 C 0.14 2.43 3.23 -66.81 -0.22 2.21 16 12 H 0.08 1.39 7.59 -51.93 -0.39 1.00 16 13 C -0.13 -2.37 6.54 -25.07 -0.16 -2.53 16 14 C -0.13 -2.63 5.31 -24.74 -0.13 -2.77 16 15 C 0.01 0.24 2.27 -90.12 -0.20 0.04 16 16 H 0.03 0.78 7.06 -51.93 -0.37 0.42 16 17 C -0.51 -13.73 9.05 -34.44 -0.31 -14.04 16 18 H 0.07 2.10 7.79 -52.48 -0.41 1.70 16 19 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 20 N -0.90 -27.12 13.96 55.43 0.77 -26.35 16 21 Si 0.88 21.53 24.65 -169.99 -4.19 17.34 16 22 H -0.28 -6.66 7.10 56.52 0.40 -6.26 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.26 -6.22 6.47 56.52 0.37 -5.85 16 25 C -0.11 -2.09 6.13 -25.61 -0.16 -2.25 16 26 H 0.03 0.24 8.01 -51.93 -0.42 -0.18 16 27 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.36 7.96 -51.93 -0.41 -0.05 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.92 7.68 -51.93 -0.40 0.52 16 35 H 0.40 5.30 8.31 -40.82 -0.34 4.96 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.98 8.04 -51.93 -0.42 0.57 16 38 H 0.07 1.39 8.05 -51.93 -0.42 0.97 16 39 H 0.05 0.97 5.27 -51.93 -0.27 0.70 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 41 H 0.07 1.27 7.13 -51.93 -0.37 0.90 16 42 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 326.67 15.07 4.92 4.92 Total: -1.00 -31.89 326.67 -8.29 -40.17 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.17 Total: 2.88 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: -1.34 Total: -10.80 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: -0.60 Total: -44.48 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.19 Total: 17.34 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.89 -8.29 -40.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897889746.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.822 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds