Wall clock time and date at job start Mon Mar 30 2020 01:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48529 * 111.00167 * 2 1 4 4 C 1.54937 * 103.22947 * 159.71718 * 3 2 1 5 5 C 1.54599 * 102.91875 * 322.58399 * 4 3 2 6 6 C 1.47904 * 110.99787 * 117.39481 * 2 1 3 7 7 H 1.09004 * 110.07933 * 333.60131 * 6 2 1 8 8 C 1.50693 * 109.91902 * 94.80184 * 6 2 1 9 9 O 1.21284 * 119.99860 * 17.59041 * 8 6 2 10 10 N 1.34778 * 120.00240 * 197.58990 * 8 6 2 11 11 C 1.46503 * 119.99946 * 179.97438 * 10 8 6 12 12 H 1.09002 * 110.01968 * 325.70269 * 11 10 8 13 13 C 1.54266 * 110.07197 * 87.12181 * 11 10 8 14 14 C 1.54894 * 104.19690 * 95.69521 * 13 11 10 15 15 C 1.54884 * 102.74702 * 37.94277 * 14 13 11 16 16 H 1.08994 * 110.48963 * 80.73665 * 15 14 13 17 17 C 1.50694 * 110.59825 * 203.32395 * 15 14 13 18 18 H 1.08005 * 120.00342 * 114.83794 * 17 15 14 19 19 C 1.37878 * 120.00264 * 294.84157 * 17 15 14 20 20 N 1.31512 * 120.00317 * 180.02562 * 19 17 15 21 21 Si 1.86797 * 119.99818 * 0.02562 * 19 17 15 22 22 H 1.48497 * 109.47279 * 89.99835 * 21 19 17 23 23 H 1.48494 * 109.47239 * 210.00074 * 21 19 17 24 24 H 1.48504 * 109.47096 * 329.99770 * 21 19 17 25 25 C 1.53873 * 110.03247 * 204.31155 * 11 10 8 26 26 H 1.08997 * 109.47260 * 302.61009 * 1 2 3 27 27 H 1.09007 * 109.46753 * 62.60500 * 1 2 3 28 28 H 1.08996 * 109.47680 * 182.60238 * 1 2 3 29 29 H 1.09001 * 110.66927 * 41.28100 * 3 2 1 30 30 H 1.08998 * 110.67187 * 278.15260 * 3 2 1 31 31 H 1.09004 * 110.72788 * 204.22906 * 4 3 2 32 32 H 1.08992 * 110.72435 * 80.94200 * 4 3 2 33 33 H 1.08993 * 110.31194 * 263.03791 * 5 4 3 34 34 H 1.08999 * 110.38659 * 140.91452 * 5 4 3 35 35 H 0.97000 * 120.00222 * 0.02562 * 10 8 6 36 36 H 1.08998 * 110.48638 * 214.37659 * 13 11 10 37 37 H 1.09001 * 110.48707 * 337.01745 * 13 11 10 38 38 H 1.09004 * 110.75571 * 279.62799 * 14 13 11 39 39 H 1.08991 * 110.91507 * 156.33313 * 14 13 11 40 40 H 0.97002 * 120.00433 * 180.02562 * 20 19 17 41 41 H 1.09002 * 110.03049 * 359.94889 * 25 11 10 42 42 H 1.08995 * 110.03495 * 121.33751 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3866 0.0000 4 6 3.4491 1.2106 0.5228 5 6 3.2981 0.1054 1.5932 6 6 1.9990 -0.6353 1.2260 7 1 1.2769 -0.5432 2.0374 8 6 2.2937 -2.0898 0.9642 9 8 2.3969 -2.4921 -0.1753 10 7 2.4425 -2.9437 1.9963 11 6 2.7285 -4.3578 1.7417 12 1 2.2228 -4.6829 0.8325 13 6 4.2498 -4.5743 1.6066 14 6 4.6975 -5.0186 3.0213 15 6 3.5245 -5.9178 3.4842 16 1 3.6180 -6.9165 3.0577 17 6 3.4742 -5.9909 4.9886 18 1 2.6308 -5.5771 5.5215 19 6 4.5048 -6.5859 5.6848 20 7 4.4607 -6.6501 6.9976 21 14 5.9640 -7.3008 4.7634 22 1 7.0072 -6.2565 4.6015 23 1 6.5221 -8.4434 5.5302 24 1 5.5225 -7.7710 3.4257 25 6 2.2672 -5.2120 2.9356 26 1 -0.3633 0.5538 0.8656 27 1 -0.3633 0.4729 -0.9125 28 1 -0.3634 -1.0265 0.0467 29 1 1.4237 2.0205 0.6728 30 1 2.0042 1.7977 -1.0095 31 1 3.8123 2.1352 0.9717 32 1 4.1115 0.8835 -0.2785 33 1 3.2134 0.5486 2.5854 34 1 4.1466 -0.5778 1.5559 35 1 2.3596 -2.6221 2.9077 36 1 4.4606 -5.3560 0.8767 37 1 4.7440 -3.6446 1.3245 38 1 4.8071 -4.1571 3.6801 39 1 5.6257 -5.5879 2.9748 40 1 5.1860 -7.0683 7.4875 41 1 1.8315 -4.5744 3.7047 42 1 1.5372 -5.9512 2.6059 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897889746.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:42 Heat of formation + Delta-G solvation = -61.082838 kcal Electronic energy + Delta-G solvation = -20913.170357 eV Core-core repulsion = 17891.536589 eV Total energy + Delta-G solvation = -3021.633768 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.30956 -39.59548 -38.25685 -35.18488 -33.98695 -33.10087 -30.89889 -30.04582 -28.87618 -26.62220 -25.52807 -23.49752 -22.10499 -21.54572 -21.00305 -20.56754 -18.94359 -18.32882 -17.21388 -16.82993 -16.78037 -16.24019 -15.71265 -15.28942 -15.07464 -14.81369 -14.61467 -14.47315 -14.14728 -14.03976 -13.43911 -13.18171 -12.94096 -12.86573 -12.61134 -12.49221 -12.36632 -12.24699 -11.99871 -11.84549 -11.69849 -11.62358 -11.51665 -11.30108 -11.02394 -10.69108 -10.65073 -9.94988 -9.38071 -8.26686 -6.28801 1.34256 1.38335 1.47717 1.71282 2.15884 2.36239 3.09121 3.12419 3.59874 3.63780 3.82911 3.88017 3.94267 4.11836 4.13860 4.27131 4.43190 4.48839 4.58152 4.62353 4.65994 4.72356 4.77230 4.86262 4.91872 4.95882 4.97241 4.99269 5.00317 5.10373 5.12584 5.24169 5.24888 5.45273 5.65635 5.66106 5.78379 5.83671 6.03100 6.34520 6.69540 6.77791 7.36661 7.37832 8.89748 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.033322 B = 0.004301 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.088478 B = 6508.363012 C = 6600.194230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.528 5.528 3 C 0.038 3.962 4 C -0.119 4.119 5 C -0.120 4.120 6 C 0.050 3.950 7 H 0.092 0.908 8 C 0.516 3.484 9 O -0.566 6.566 10 N -0.713 5.713 11 C 0.151 3.849 12 H 0.077 0.923 13 C -0.122 4.122 14 C -0.122 4.122 15 C 0.005 3.995 16 H 0.030 0.970 17 C -0.507 4.507 18 H 0.039 0.961 19 C 0.016 3.984 20 N -0.951 5.951 21 Si 0.936 3.064 22 H -0.268 1.268 23 H -0.298 1.298 24 H -0.247 1.247 25 C -0.104 4.104 26 H 0.046 0.954 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.062 0.938 35 H 0.408 0.592 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.041 0.959 40 H 0.264 0.736 41 H 0.066 0.934 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.377 16.766 -12.288 21.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.253 5.253 3 C -0.089 4.089 4 C -0.157 4.157 5 C -0.159 4.159 6 C -0.063 4.063 7 H 0.110 0.890 8 C 0.302 3.698 9 O -0.444 6.444 10 N -0.366 5.366 11 C 0.046 3.954 12 H 0.095 0.905 13 C -0.161 4.161 14 C -0.160 4.160 15 C -0.014 4.014 16 H 0.048 0.952 17 C -0.545 4.545 18 H 0.058 0.942 19 C -0.181 4.181 20 N -0.592 5.592 21 Si 0.762 3.238 22 H -0.193 1.193 23 H -0.225 1.225 24 H -0.171 1.171 25 C -0.142 4.142 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.244 0.756 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.090 16.128 -13.436 21.387 hybrid contribution 0.370 -0.315 1.313 1.400 sum -3.720 15.813 -12.123 20.270 Atomic orbital electron populations 1.22524 0.86570 1.01649 1.02179 1.64280 1.09207 1.16124 1.35685 1.23330 0.95115 0.88231 1.02232 1.22499 0.96559 0.98868 0.97814 1.22397 0.94687 0.97677 1.01098 1.22390 0.99539 0.90866 0.93457 0.89022 1.20983 0.75723 0.88490 0.84558 1.90642 1.51346 1.79098 1.23334 1.46228 1.72016 1.08599 1.09742 1.21451 0.95186 0.80546 0.98240 0.90488 1.22683 0.95536 1.00939 0.96926 1.22767 0.98072 0.99586 0.95580 1.19963 0.92801 0.94920 0.93747 0.95218 1.21349 1.05331 1.36612 0.91243 0.94225 1.25774 1.01088 0.96055 0.95212 1.70038 1.34389 1.46711 1.08027 0.85985 0.80082 0.78133 0.79559 1.19309 1.22496 1.17126 1.22286 0.98050 0.98239 0.95591 0.93570 0.90002 0.92965 0.91673 0.89229 0.88142 0.91921 0.87987 0.91954 0.75556 0.90950 0.91948 0.92265 0.94024 0.92718 0.91496 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.40 127.69 1.20 1.55 16 2 N -0.53 -11.71 4.75 -888.46 -4.22 -15.93 16 3 C 0.04 0.59 6.56 86.65 0.57 1.16 16 4 C -0.12 -1.86 7.06 31.80 0.22 -1.63 16 5 C -0.12 -2.17 6.56 31.47 0.21 -1.97 16 6 C 0.05 1.08 2.87 44.31 0.13 1.21 16 7 H 0.09 1.64 7.74 -2.38 -0.02 1.63 16 8 C 0.52 15.26 6.86 87.65 0.60 15.86 16 9 O -0.57 -21.50 16.22 -3.04 -0.05 -21.55 16 10 N -0.71 -20.33 5.04 -439.10 -2.21 -22.54 16 11 C 0.15 4.93 3.23 45.71 0.15 5.08 16 12 H 0.08 2.61 7.59 -2.39 -0.02 2.59 16 13 C -0.12 -4.15 6.54 31.67 0.21 -3.95 16 14 C -0.12 -4.87 5.31 31.89 0.17 -4.70 16 15 C 0.00 0.21 2.27 -10.47 -0.02 0.18 16 16 H 0.03 1.34 7.06 -2.39 -0.02 1.32 16 17 C -0.51 -27.60 9.05 25.60 0.23 -27.37 16 18 H 0.04 2.36 7.79 -2.91 -0.02 2.34 16 19 C 0.02 0.89 5.46 84.66 0.46 1.35 16 20 N -0.95 -58.29 13.96 21.45 0.30 -57.99 16 21 Si 0.94 44.02 24.65 68.60 1.69 45.71 16 22 H -0.27 -12.06 7.10 99.48 0.71 -11.36 16 23 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.25 -10.87 6.47 99.48 0.64 -10.22 16 25 C -0.10 -3.76 6.13 31.32 0.19 -3.57 16 26 H 0.05 0.66 8.01 -2.39 -0.02 0.64 16 27 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 0.78 7.96 -2.39 -0.02 0.76 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.06 1.34 7.68 -2.39 -0.02 1.33 16 35 H 0.41 10.19 8.31 -92.71 -0.77 9.42 16 36 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.06 2.06 8.04 -2.39 -0.02 2.04 16 38 H 0.06 2.42 8.05 -2.39 -0.02 2.40 16 39 H 0.04 1.68 5.27 -2.39 -0.01 1.67 16 40 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 41 H 0.07 2.44 7.13 -2.39 -0.02 2.42 16 42 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -69.10 326.67 -0.02 -69.12 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.16 Total: 19.98 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 4.31 Total: -16.79 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -6.14 Total: -96.47 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.05 Total: -21.55 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.69 Total: 45.71 kcal Total: -69.10 -0.02 -69.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897889746.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.039 kcal (2) G-P(sol) polarization free energy of solvation -69.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds