Wall clock time and date at job start Mon Mar 30 2020 01:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48563 * 110.99728 * 2 1 4 4 C 1.54381 * 104.59225 * 200.95857 * 3 2 1 5 5 C 1.54262 * 105.06326 * 23.85126 * 4 3 2 6 6 C 1.48561 * 111.00118 * 244.58056 * 2 1 3 7 7 H 1.08994 * 110.51132 * 40.21131 * 6 2 1 8 8 C 1.50700 * 110.41142 * 277.81700 * 6 2 1 9 9 O 1.21283 * 119.99803 * 344.82642 * 8 6 2 10 10 N 1.34777 * 119.99675 * 165.10518 * 8 6 2 11 11 C 1.46497 * 119.99525 * 179.72583 * 10 8 6 12 12 H 1.08999 * 110.02386 * 325.06276 * 11 10 8 13 13 C 1.53877 * 110.03400 * 86.45232 * 11 10 8 14 14 C 1.54265 * 106.60063 * 119.28142 * 13 11 10 15 15 C 1.54894 * 104.19518 * 23.61000 * 14 13 11 16 16 H 1.08994 * 110.75119 * 80.55828 * 15 14 13 17 17 C 1.50698 * 110.75397 * 203.74185 * 15 14 13 18 18 H 1.08002 * 119.99599 * 118.55199 * 17 15 14 19 19 C 1.37882 * 120.00317 * 298.54541 * 17 15 14 20 20 N 1.31508 * 119.99955 * 180.02562 * 19 17 15 21 21 Si 1.86794 * 119.99842 * 0.02562 * 19 17 15 22 22 H 1.48500 * 109.47366 * 89.99781 * 21 19 17 23 23 H 1.48498 * 109.47239 * 209.99945 * 21 19 17 24 24 H 1.48502 * 109.47190 * 329.99890 * 21 19 17 25 25 C 1.54270 * 110.03118 * 203.61728 * 11 10 8 26 26 H 1.09002 * 109.46623 * 175.42077 * 1 2 3 27 27 H 1.08997 * 109.47371 * 295.41859 * 1 2 3 28 28 H 1.09000 * 109.47004 * 55.42321 * 1 2 3 29 29 H 1.09002 * 110.41255 * 82.18484 * 3 2 1 30 30 H 1.08995 * 110.51132 * 319.78765 * 3 2 1 31 31 H 1.09002 * 110.32668 * 264.95287 * 4 3 2 32 32 H 1.09002 * 110.41029 * 142.79629 * 4 3 2 33 33 H 1.08995 * 110.32474 * 241.10678 * 5 4 3 34 34 H 1.08996 * 110.32044 * 118.89082 * 5 4 3 35 35 H 0.97000 * 119.99894 * 359.71837 * 10 8 6 36 36 H 1.09001 * 110.03519 * 238.56863 * 13 11 10 37 37 H 1.09003 * 110.03426 * 359.97438 * 13 11 10 38 38 H 1.09005 * 110.48848 * 142.29003 * 14 13 11 39 39 H 1.08999 * 110.48554 * 264.79772 * 14 13 11 40 40 H 0.96998 * 120.00159 * 180.02562 * 20 19 17 41 41 H 1.09002 * 110.48268 * 335.78303 * 25 11 10 42 42 H 1.08991 * 110.48578 * 98.42593 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4432 1.2502 -0.5344 5 6 3.4433 -0.0539 -1.3584 6 6 2.0014 -0.5953 -1.2527 7 1 1.4105 -0.2730 -2.1099 8 6 2.0104 -2.0993 -1.1574 9 8 1.8830 -2.6393 -0.0789 10 7 2.1658 -2.8440 -2.2699 11 6 2.1806 -4.3059 -2.1765 12 1 2.6592 -4.6157 -1.2475 13 6 0.7435 -4.8526 -2.2367 14 6 0.6705 -5.7647 -3.4786 15 6 2.1391 -6.1925 -3.7225 16 1 2.4194 -7.0082 -3.0562 17 6 2.3488 -6.5855 -5.1621 18 1 3.0494 -6.0377 -5.7749 19 6 1.6464 -7.6446 -5.6970 20 7 1.8298 -7.9879 -6.9532 21 14 0.4343 -8.5918 -4.6373 22 1 -0.9093 -7.9687 -4.7446 23 1 0.3653 -10.0003 -5.1027 24 1 0.8834 -8.5595 -3.2222 25 6 2.9309 -4.9050 -3.3840 26 1 -0.3633 -1.0244 -0.0821 27 1 -0.3634 0.4411 0.9281 28 1 -0.3633 0.5832 -0.8461 29 1 2.0079 1.7917 1.0121 30 1 1.4104 2.0229 -0.6591 31 1 4.1483 1.1749 0.2935 32 1 3.6954 2.0994 -1.1695 33 1 4.1483 -0.7692 -0.9350 34 1 3.6937 0.1555 -2.3984 35 1 2.2677 -2.4120 -3.1324 36 1 0.5249 -5.4282 -1.3373 37 1 0.0349 -4.0301 -2.3350 38 1 0.0479 -6.6362 -3.2759 39 1 0.2846 -5.2124 -4.3354 40 1 1.3354 -8.7327 -7.3296 41 1 2.9122 -4.2132 -4.2261 42 1 3.9578 -5.1491 -3.1122 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897889747.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:45 Heat of formation + Delta-G solvation = -37.985774 kcal Electronic energy + Delta-G solvation = -20765.757297 eV Core-core repulsion = 17745.125093 eV Total energy + Delta-G solvation = -3020.632204 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.23234 -38.43602 -36.94912 -33.71978 -32.46047 -32.06553 -29.83645 -28.44379 -27.40564 -25.87292 -23.74868 -22.48085 -21.21803 -20.23691 -19.73977 -19.18694 -17.29228 -16.90587 -16.18710 -15.76780 -15.17063 -14.94470 -14.42597 -14.16223 -14.00655 -13.99525 -13.29709 -12.82594 -12.63938 -12.54146 -12.39411 -12.18769 -11.89886 -11.69457 -11.57244 -11.31918 -11.09203 -10.96563 -10.88863 -10.47557 -10.12631 -9.97653 -9.78138 -9.50273 -9.44916 -9.03200 -8.68866 -8.68078 -8.54184 -6.08630 -4.07748 2.80165 3.19417 3.29300 3.39061 3.41195 3.94359 4.35458 4.41074 4.41942 4.67896 4.89731 4.96106 5.15197 5.18061 5.20541 5.26423 5.34211 5.41549 5.45435 5.52243 5.58962 5.60709 5.74154 5.80760 5.87991 6.11950 6.14950 6.30077 6.42828 6.49137 6.50967 6.57555 6.69769 6.72382 6.83814 7.03078 7.09304 7.51212 7.74361 7.79572 8.47903 8.51200 8.94392 9.54647 11.04577 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039825 B = 0.004048 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.900811 B = 6914.913698 C = 7266.096100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.490 5.490 3 C 0.031 3.969 4 C -0.123 4.123 5 C -0.112 4.112 6 C 0.041 3.959 7 H 0.072 0.928 8 C 0.517 3.483 9 O -0.523 6.523 10 N -0.721 5.721 11 C 0.139 3.861 12 H 0.082 0.918 13 C -0.130 4.130 14 C -0.130 4.130 15 C 0.015 3.985 16 H 0.035 0.965 17 C -0.511 4.511 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.902 5.902 21 Si 0.882 3.118 22 H -0.279 1.279 23 H -0.296 1.296 24 H -0.264 1.264 25 C -0.109 4.109 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.397 0.603 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.045 0.955 39 H 0.066 0.934 40 H 0.263 0.737 41 H 0.068 0.932 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.125 18.567 10.762 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.214 5.214 3 C -0.097 4.097 4 C -0.161 4.161 5 C -0.151 4.151 6 C -0.071 4.071 7 H 0.090 0.910 8 C 0.302 3.698 9 O -0.398 6.398 10 N -0.373 5.373 11 C 0.035 3.965 12 H 0.100 0.900 13 C -0.169 4.169 14 C -0.168 4.168 15 C -0.005 4.005 16 H 0.053 0.947 17 C -0.548 4.548 18 H 0.092 0.908 19 C -0.130 4.130 20 N -0.541 5.541 21 Si 0.711 3.289 22 H -0.205 1.205 23 H -0.223 1.223 24 H -0.189 1.189 25 C -0.147 4.147 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.046 0.954 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.231 0.769 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.086 0.914 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.121 17.735 11.903 21.360 hybrid contribution -1.156 0.067 -0.752 1.381 sum -1.277 17.802 11.151 21.045 Atomic orbital electron populations 1.22531 0.87401 1.02534 1.00905 1.65084 1.08543 1.14487 1.33262 1.23164 0.95237 0.89749 1.01509 1.22287 0.96766 0.97164 0.99844 1.22236 0.94421 0.97476 1.00963 1.22684 0.97897 0.93237 0.93302 0.90998 1.20211 0.76760 0.88383 0.84468 1.90687 1.47953 1.73400 1.27733 1.46322 1.73964 1.07548 1.09424 1.21814 0.96627 0.77653 1.00396 0.89952 1.22548 0.95899 0.99158 0.99259 1.22821 1.00460 0.97630 0.95906 1.20059 0.90122 0.92623 0.97654 0.94711 1.20975 1.24751 1.15181 0.93933 0.90834 1.24986 0.96671 0.96688 0.94700 1.69896 1.42364 1.28694 1.13125 0.86900 0.81910 0.78712 0.81342 1.20481 1.22274 1.18928 1.22565 0.98390 0.98799 0.94972 0.90926 0.90920 0.95421 0.89732 0.93681 0.90645 0.90959 0.90328 0.90310 0.76855 0.92298 0.92631 0.93608 0.91520 0.92685 0.91385 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.44 60.06 0.57 0.73 16 2 N -0.49 -5.76 4.92 -231.72 -1.14 -6.90 16 3 C 0.03 0.27 6.49 -2.18 -0.01 0.26 16 4 C -0.12 -0.96 7.00 -25.35 -0.18 -1.14 16 5 C -0.11 -1.05 6.54 -25.35 -0.17 -1.21 16 6 C 0.04 0.46 2.68 -67.22 -0.18 0.28 16 7 H 0.07 0.71 7.97 -51.93 -0.41 0.29 16 8 C 0.52 7.69 6.71 -10.98 -0.07 7.61 16 9 O -0.52 -9.91 16.24 5.55 0.09 -9.82 16 10 N -0.72 -10.23 4.99 -52.72 -0.26 -10.50 16 11 C 0.14 2.36 3.23 -66.81 -0.22 2.15 16 12 H 0.08 1.49 7.61 -51.93 -0.39 1.09 16 13 C -0.13 -2.35 6.59 -25.61 -0.17 -2.51 16 14 C -0.13 -2.74 5.07 -25.07 -0.13 -2.86 16 15 C 0.01 0.33 2.30 -89.78 -0.21 0.13 16 16 H 0.03 0.82 7.37 -51.93 -0.38 0.43 16 17 C -0.51 -13.90 9.12 -34.44 -0.31 -14.21 16 18 H 0.07 2.15 8.03 -52.49 -0.42 1.73 16 19 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 20 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 21 Si 0.88 21.74 24.46 -169.99 -4.16 17.58 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.30 -7.33 7.11 56.52 0.40 -6.92 16 24 H -0.26 -6.27 6.48 56.52 0.37 -5.91 16 25 C -0.11 -2.03 5.94 -25.07 -0.15 -2.18 16 26 H 0.07 0.90 7.96 -51.93 -0.41 0.49 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.03 0.25 7.98 -51.93 -0.41 -0.17 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.04 0.34 7.91 -51.93 -0.41 -0.07 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.40 4.70 8.34 -40.82 -0.34 4.36 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.95 7.92 -51.93 -0.41 0.54 16 38 H 0.05 0.99 4.90 -51.93 -0.25 0.74 16 39 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.07 1.23 7.63 -51.93 -0.40 0.83 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 326.62 15.07 4.92 4.92 Total: -1.00 -32.11 326.62 -8.30 -40.42 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -7.21 Total: 1.84 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -1.32 Total: -11.04 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: -0.63 Total: -43.90 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.16 Total: 17.58 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.11 -8.30 -40.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897889747.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.432 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds