Wall clock time and date at job start Mon Mar 30 2020 01:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.48563 * 110.99728 * 2 1 4 4 C 1.54381 * 104.59225 * 200.95857 * 3 2 1 5 5 C 1.54262 * 105.06326 * 23.85126 * 4 3 2 6 6 C 1.48561 * 111.00118 * 244.58056 * 2 1 3 7 7 H 1.08994 * 110.51132 * 40.21131 * 6 2 1 8 8 C 1.50700 * 110.41142 * 277.81700 * 6 2 1 9 9 O 1.21283 * 119.99803 * 344.82642 * 8 6 2 10 10 N 1.34777 * 119.99675 * 165.10518 * 8 6 2 11 11 C 1.46497 * 119.99525 * 179.72583 * 10 8 6 12 12 H 1.08999 * 110.02386 * 325.06276 * 11 10 8 13 13 C 1.53877 * 110.03400 * 86.45232 * 11 10 8 14 14 C 1.54265 * 106.60063 * 119.28142 * 13 11 10 15 15 C 1.54894 * 104.19518 * 23.61000 * 14 13 11 16 16 H 1.08994 * 110.75119 * 80.55828 * 15 14 13 17 17 C 1.50698 * 110.75397 * 203.74185 * 15 14 13 18 18 H 1.08002 * 119.99599 * 118.55199 * 17 15 14 19 19 C 1.37882 * 120.00317 * 298.54541 * 17 15 14 20 20 N 1.31508 * 119.99955 * 180.02562 * 19 17 15 21 21 Si 1.86794 * 119.99842 * 0.02562 * 19 17 15 22 22 H 1.48500 * 109.47366 * 89.99781 * 21 19 17 23 23 H 1.48498 * 109.47239 * 209.99945 * 21 19 17 24 24 H 1.48502 * 109.47190 * 329.99890 * 21 19 17 25 25 C 1.54270 * 110.03118 * 203.61728 * 11 10 8 26 26 H 1.09002 * 109.46623 * 175.42077 * 1 2 3 27 27 H 1.08997 * 109.47371 * 295.41859 * 1 2 3 28 28 H 1.09000 * 109.47004 * 55.42321 * 1 2 3 29 29 H 1.09002 * 110.41255 * 82.18484 * 3 2 1 30 30 H 1.08995 * 110.51132 * 319.78765 * 3 2 1 31 31 H 1.09002 * 110.32668 * 264.95287 * 4 3 2 32 32 H 1.09002 * 110.41029 * 142.79629 * 4 3 2 33 33 H 1.08995 * 110.32474 * 241.10678 * 5 4 3 34 34 H 1.08996 * 110.32044 * 118.89082 * 5 4 3 35 35 H 0.97000 * 119.99894 * 359.71837 * 10 8 6 36 36 H 1.09001 * 110.03519 * 238.56863 * 13 11 10 37 37 H 1.09003 * 110.03426 * 359.97438 * 13 11 10 38 38 H 1.09005 * 110.48848 * 142.29003 * 14 13 11 39 39 H 1.08999 * 110.48554 * 264.79772 * 14 13 11 40 40 H 0.96998 * 120.00159 * 180.02562 * 20 19 17 41 41 H 1.09002 * 110.48268 * 335.78303 * 25 11 10 42 42 H 1.08991 * 110.48578 * 98.42593 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3870 0.0000 4 6 3.4432 1.2502 -0.5344 5 6 3.4433 -0.0539 -1.3584 6 6 2.0014 -0.5953 -1.2527 7 1 1.4105 -0.2730 -2.1099 8 6 2.0104 -2.0993 -1.1574 9 8 1.8830 -2.6393 -0.0789 10 7 2.1658 -2.8440 -2.2699 11 6 2.1806 -4.3059 -2.1765 12 1 2.6592 -4.6157 -1.2475 13 6 0.7435 -4.8526 -2.2367 14 6 0.6705 -5.7647 -3.4786 15 6 2.1391 -6.1925 -3.7225 16 1 2.4194 -7.0082 -3.0562 17 6 2.3488 -6.5855 -5.1621 18 1 3.0494 -6.0377 -5.7749 19 6 1.6464 -7.6446 -5.6970 20 7 1.8298 -7.9879 -6.9532 21 14 0.4343 -8.5918 -4.6373 22 1 -0.9093 -7.9687 -4.7446 23 1 0.3653 -10.0003 -5.1027 24 1 0.8834 -8.5595 -3.2222 25 6 2.9309 -4.9050 -3.3840 26 1 -0.3633 -1.0244 -0.0821 27 1 -0.3634 0.4411 0.9281 28 1 -0.3633 0.5832 -0.8461 29 1 2.0079 1.7917 1.0121 30 1 1.4104 2.0229 -0.6591 31 1 4.1483 1.1749 0.2935 32 1 3.6954 2.0994 -1.1695 33 1 4.1483 -0.7692 -0.9350 34 1 3.6937 0.1555 -2.3984 35 1 2.2677 -2.4120 -3.1324 36 1 0.5249 -5.4282 -1.3373 37 1 0.0349 -4.0301 -2.3350 38 1 0.0479 -6.6362 -3.2759 39 1 0.2846 -5.2124 -4.3354 40 1 1.3354 -8.7327 -7.3296 41 1 2.9122 -4.2132 -4.2261 42 1 3.9578 -5.1491 -3.1122 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897889747.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:45 Heat of formation + Delta-G solvation = -61.235985 kcal Electronic energy + Delta-G solvation = -20766.765502 eV Core-core repulsion = 17745.125093 eV Total energy + Delta-G solvation = -3021.640409 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.30509 -39.58480 -38.30158 -35.27879 -34.05462 -33.11294 -30.90165 -30.06096 -28.85126 -26.64127 -25.55660 -23.55406 -21.87442 -21.57301 -21.17447 -20.68844 -18.84237 -18.32307 -17.18710 -17.01162 -16.77056 -16.17621 -15.66026 -15.37192 -15.20534 -14.82259 -14.72326 -14.40871 -14.12959 -14.09823 -13.35914 -13.32730 -12.97918 -12.86028 -12.68581 -12.50786 -12.38574 -12.26799 -12.03801 -11.83417 -11.63865 -11.54142 -11.52997 -11.26063 -11.04636 -10.70322 -10.67974 -9.98539 -9.46197 -8.28208 -6.30607 1.32908 1.37332 1.46783 1.67212 2.12604 2.34722 3.07790 3.11559 3.58293 3.62793 3.80396 3.88245 3.99025 4.06657 4.11810 4.26430 4.41375 4.46292 4.57812 4.60551 4.65136 4.70945 4.74289 4.89256 4.89546 4.93172 4.95002 4.97348 5.02812 5.10091 5.12504 5.23782 5.25402 5.40028 5.62021 5.66072 5.76202 5.79760 5.99446 6.32999 6.66860 6.75939 7.34598 7.35409 8.88358 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039825 B = 0.004048 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.900811 B = 6914.913698 C = 7266.096100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.520 5.520 3 C 0.032 3.968 4 C -0.119 4.119 5 C -0.112 4.112 6 C 0.044 3.956 7 H 0.093 0.907 8 C 0.517 3.483 9 O -0.568 6.568 10 N -0.712 5.712 11 C 0.150 3.850 12 H 0.074 0.926 13 C -0.121 4.121 14 C -0.126 4.126 15 C 0.006 3.994 16 H 0.029 0.971 17 C -0.509 4.509 18 H 0.040 0.960 19 C 0.015 3.985 20 N -0.950 5.950 21 Si 0.939 3.061 22 H -0.267 1.267 23 H -0.298 1.298 24 H -0.250 1.250 25 C -0.099 4.099 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.411 0.589 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.264 0.736 41 H 0.072 0.928 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.637 20.619 11.802 23.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.245 5.245 3 C -0.095 4.095 4 C -0.157 4.157 5 C -0.150 4.150 6 C -0.068 4.068 7 H 0.111 0.889 8 C 0.303 3.697 9 O -0.445 6.445 10 N -0.364 5.364 11 C 0.045 3.955 12 H 0.092 0.908 13 C -0.160 4.160 14 C -0.164 4.164 15 C -0.014 4.014 16 H 0.048 0.952 17 C -0.547 4.547 18 H 0.059 0.941 19 C -0.182 4.182 20 N -0.591 5.591 21 Si 0.765 3.235 22 H -0.193 1.193 23 H -0.225 1.225 24 H -0.174 1.174 25 C -0.137 4.137 26 H 0.066 0.934 27 H 0.099 0.901 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.248 0.752 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.625 19.827 12.938 23.683 hybrid contribution -0.925 -0.533 -1.102 1.534 sum -1.550 19.294 11.836 22.688 Atomic orbital electron populations 1.22487 0.87132 1.01321 1.02161 1.65037 1.09139 1.16557 1.33760 1.23235 0.95687 0.88294 1.02323 1.22310 0.96238 0.97190 0.99916 1.22287 0.92488 0.97626 1.02602 1.22703 0.99640 0.90322 0.94111 0.88894 1.20890 0.75238 0.89972 0.83561 1.90665 1.49984 1.74535 1.29363 1.46165 1.73600 1.06348 1.10292 1.21471 0.95596 0.79369 0.99024 0.90752 1.22467 0.96814 0.98978 0.97737 1.22680 0.98690 0.97961 0.97063 1.20041 0.92410 0.94378 0.94521 0.95249 1.21278 1.23226 1.14355 0.95868 0.94129 1.25778 0.98723 0.97930 0.95723 1.70033 1.44135 1.29795 1.15093 0.85977 0.80081 0.77088 0.80322 1.19291 1.22528 1.17359 1.22416 0.98392 0.97068 0.95847 0.93405 0.90081 0.93663 0.89349 0.92021 0.91030 0.88486 0.92222 0.87933 0.75210 0.92053 0.91407 0.94126 0.92204 0.92655 0.90913 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.44 127.69 1.21 1.54 16 2 N -0.52 -11.20 4.92 -887.02 -4.36 -15.56 16 3 C 0.03 0.46 6.49 86.45 0.56 1.02 16 4 C -0.12 -1.49 7.00 31.49 0.22 -1.27 16 5 C -0.11 -1.78 6.54 31.49 0.21 -1.57 16 6 C 0.04 0.90 2.68 44.32 0.12 1.01 16 7 H 0.09 1.50 7.97 -2.39 -0.02 1.48 16 8 C 0.52 14.56 6.71 87.66 0.59 15.14 16 9 O -0.57 -21.14 16.24 -3.04 -0.05 -21.19 16 10 N -0.71 -18.80 4.99 -439.09 -2.19 -21.00 16 11 C 0.15 4.88 3.23 45.72 0.15 5.02 16 12 H 0.07 2.59 7.61 -2.39 -0.02 2.57 16 13 C -0.12 -4.15 6.59 31.32 0.21 -3.94 16 14 C -0.13 -5.11 5.07 31.67 0.16 -4.95 16 15 C 0.01 0.25 2.30 -10.25 -0.02 0.23 16 16 H 0.03 1.35 7.37 -2.39 -0.02 1.33 16 17 C -0.51 -28.05 9.12 25.60 0.23 -27.82 16 18 H 0.04 2.44 8.03 -2.91 -0.02 2.42 16 19 C 0.02 0.89 5.46 84.66 0.46 1.35 16 20 N -0.95 -58.65 13.96 21.45 0.30 -58.36 16 21 Si 0.94 44.67 24.46 68.60 1.68 46.34 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 24 H -0.25 -11.17 6.48 99.48 0.64 -10.52 16 25 C -0.10 -3.57 5.94 31.67 0.19 -3.38 16 26 H 0.05 1.14 7.96 -2.39 -0.02 1.13 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.04 0.69 7.98 -2.39 -0.02 0.67 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 0.69 7.91 -2.39 -0.02 0.67 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 1.18 7.85 -2.39 -0.02 1.16 16 34 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.41 8.66 8.34 -92.71 -0.77 7.89 16 36 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.07 2.16 7.92 -2.39 -0.02 2.14 16 38 H 0.04 1.68 4.90 -2.38 -0.01 1.67 16 39 H 0.06 2.49 8.04 -2.39 -0.02 2.47 16 40 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.07 2.54 7.63 -2.39 -0.02 2.52 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -70.26 326.62 -0.20 -70.45 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 0.16 Total: 16.92 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: 4.27 Total: -17.61 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -6.26 Total: -94.91 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.05 Total: -21.19 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.68 Total: 46.34 kcal Total: -70.26 -0.20 -70.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897889747.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.216 kcal (2) G-P(sol) polarization free energy of solvation -70.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds