Wall clock time and date at job start Mon Mar 30 2020 01:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.45929 * 111.00122 * 2 1 4 4 C 1.55726 * 111.52035 * 222.17851 * 3 2 1 5 5 C 1.52235 * 108.08141 * 301.59046 * 4 3 2 6 6 H 1.09001 * 106.82416 * 216.03665 * 5 4 3 7 7 C 1.51293 * 115.64128 * 97.56156 * 5 4 3 8 8 C 1.54360 * 104.62901 * 255.90169 * 7 5 4 9 9 C 1.54097 * 105.27387 * 353.50088 * 8 7 5 10 10 H 1.08998 * 110.97167 * 227.24325 * 9 8 7 11 11 C 1.46771 * 111.00069 * 124.61465 * 2 1 3 12 12 N 1.47372 * 110.58081 * 332.05655 * 5 4 3 13 13 C 1.34780 * 127.92021 * 280.76560 * 12 5 4 14 14 O 1.21280 * 120.00423 * 359.69747 * 13 12 5 15 15 C 1.50701 * 119.99795 * 179.70424 * 13 12 5 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47466 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00362 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99850 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47052 * 89.99717 * 21 19 17 23 23 H 1.48495 * 109.47307 * 209.99656 * 21 19 17 24 24 H 1.48500 * 109.47143 * 330.00164 * 21 19 17 25 25 H 1.08997 * 109.47386 * 295.38790 * 1 2 3 26 26 H 1.08994 * 109.47150 * 55.38930 * 1 2 3 27 27 H 1.09001 * 109.47320 * 175.38607 * 1 2 3 28 28 H 1.09009 * 109.06896 * 342.70065 * 3 2 1 29 29 H 1.08994 * 109.07195 * 101.65151 * 3 2 1 30 30 H 1.09002 * 109.72170 * 61.25009 * 4 3 2 31 31 H 1.08994 * 109.72983 * 181.87322 * 4 3 2 32 32 H 1.08998 * 110.41509 * 15.19612 * 7 5 4 33 33 H 1.09002 * 110.41074 * 137.64397 * 7 5 4 34 34 H 1.08996 * 111.32031 * 234.05043 * 8 7 5 35 35 H 1.09003 * 109.34934 * 111.93842 * 8 7 5 36 36 H 1.08998 * 108.93401 * 47.12183 * 11 2 1 37 37 H 1.09008 * 108.85461 * 288.48816 * 11 2 1 38 38 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 39 39 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 40 40 H 1.09002 * 109.47153 * 299.99998 * 16 15 13 41 41 H 1.08998 * 109.47533 * 59.99628 * 16 15 13 42 42 H 0.96994 * 119.99814 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9920 1.3624 0.0000 4 6 3.1990 1.5109 -0.9727 5 6 4.2775 0.5271 -0.5411 6 1 5.2370 1.0135 -0.7170 7 6 4.3105 -0.7822 -1.2985 8 6 3.6870 -1.8091 -0.3293 9 6 3.4864 -1.0475 0.9951 10 1 3.8542 -1.6301 1.8397 11 6 1.9950 -0.7784 1.1277 12 7 4.1889 0.2633 0.9062 13 6 4.6357 1.0340 1.9175 14 8 5.1930 2.0845 1.6790 15 6 4.4430 0.5904 3.3448 16 6 5.0370 1.6376 4.2890 17 6 4.8438 1.1944 5.7162 18 1 4.3473 0.2591 5.9287 19 6 5.3017 1.9824 6.7509 20 7 5.1335 1.5953 7.9965 21 14 6.1623 3.5991 6.3833 22 1 5.1587 4.6920 6.3249 23 1 7.1486 3.8896 7.4548 24 1 6.8637 3.5009 5.0781 25 1 -0.3634 0.4406 0.9284 26 1 -0.3633 0.5837 -0.8457 27 1 -0.3634 -1.0243 -0.0827 28 1 1.2013 2.0474 -0.3064 29 1 2.3138 1.6203 1.0089 30 1 2.8809 1.2858 -1.9907 31 1 3.5868 2.5284 -0.9251 32 1 3.7234 -0.7068 -2.2138 33 1 5.3386 -1.0632 -1.5273 34 1 4.3477 -2.6625 -0.1774 35 1 2.7262 -2.1404 -0.7233 36 1 1.4668 -1.7305 1.1772 37 1 1.8158 -0.2266 2.0506 38 1 3.3783 0.4782 3.5498 39 1 4.9454 -0.3644 3.4996 40 1 6.1017 1.7494 4.0838 41 1 4.5351 2.5927 4.1344 42 1 5.4553 2.1499 8.7243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000923266455.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:46 Heat of formation + Delta-G solvation = -25.973755 kcal Electronic energy + Delta-G solvation = -21605.383146 eV Core-core repulsion = 18585.271821 eV Total energy + Delta-G solvation = -3020.111324 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.74338 -38.03730 -35.94840 -33.61946 -32.95078 -31.80711 -30.93332 -28.79304 -26.48152 -25.72795 -24.97321 -22.50720 -21.64374 -20.57735 -19.64042 -18.37590 -17.34121 -16.48165 -15.92450 -15.52678 -14.95505 -14.82453 -14.48181 -14.14997 -13.91146 -13.79837 -13.68417 -12.90203 -12.82814 -12.61599 -12.44545 -12.02203 -11.83801 -11.57257 -11.53037 -11.28707 -11.25441 -10.99777 -10.88652 -10.61866 -10.26906 -10.12353 -10.04465 -9.77809 -9.22446 -9.16003 -8.51903 -8.43261 -8.37565 -6.03485 -4.02166 3.12385 3.19564 3.37500 3.44098 3.55580 3.75620 4.43194 4.50727 4.58515 4.82002 4.89081 5.03825 5.08730 5.14087 5.24913 5.30940 5.32272 5.38675 5.52691 5.54731 5.67246 5.69845 5.71299 5.81036 5.85334 5.86514 5.98994 6.04648 6.07241 6.09573 6.16703 6.21583 6.58612 6.72639 6.96646 7.00178 7.35830 7.43144 7.76666 7.90403 8.49506 8.66856 8.99327 9.59697 11.09344 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.005176 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.016392 B = 5408.461162 C = 5603.279629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.538 5.538 3 C 0.060 3.940 4 C -0.113 4.113 5 C 0.136 3.864 6 H 0.059 0.941 7 C -0.108 4.108 8 C -0.115 4.115 9 C 0.131 3.869 10 H 0.096 0.904 11 C 0.042 3.958 12 N -0.619 5.619 13 C 0.533 3.467 14 O -0.538 6.538 15 C -0.115 4.115 16 C 0.002 3.998 17 C -0.524 4.524 18 H 0.072 0.928 19 C 0.070 3.930 20 N -0.904 5.904 21 Si 0.876 3.124 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.261 1.261 25 H 0.024 0.976 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.038 0.962 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.024 0.976 41 H 0.018 0.982 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.825 -7.200 -20.299 22.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.262 5.262 3 C -0.069 4.069 4 C -0.152 4.152 5 C 0.032 3.968 6 H 0.077 0.923 7 C -0.146 4.146 8 C -0.153 4.153 9 C 0.026 3.974 10 H 0.114 0.886 11 C -0.087 4.087 12 N -0.354 5.354 13 C 0.324 3.676 14 O -0.414 6.414 15 C -0.155 4.155 16 C -0.036 4.036 17 C -0.562 4.562 18 H 0.090 0.910 19 C -0.131 4.131 20 N -0.542 5.542 21 Si 0.703 3.297 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.185 1.185 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.042 0.958 41 H 0.036 0.964 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.269 -6.702 -20.536 22.792 hybrid contribution 0.064 1.232 0.760 1.449 sum -7.205 -5.470 -19.776 21.747 Atomic orbital electron populations 1.22386 0.87064 1.02018 1.00373 1.61055 1.07091 1.14153 1.43929 1.22346 0.96523 0.88452 0.99552 1.22269 0.94972 0.98909 0.99090 1.20642 0.98953 0.95882 0.81367 0.92304 1.21789 1.00883 0.93600 0.98343 1.22364 1.01958 0.97265 0.93696 1.21945 0.90867 0.85235 0.99326 0.88565 1.22388 0.95810 0.98536 0.91924 1.49258 1.59163 1.21384 1.05645 1.21139 0.76530 0.82987 0.86917 1.90657 1.42410 1.23416 1.84942 1.21646 1.02772 1.02365 0.88712 1.19373 0.96600 0.93704 0.93901 1.21096 1.38657 1.07835 0.88610 0.90972 1.24958 0.95365 0.97941 0.94884 1.69910 1.47230 1.38490 0.98614 0.86810 0.80098 0.84195 0.78553 1.20266 1.21384 1.18518 0.95705 0.91513 0.91454 0.92408 0.93324 0.90909 0.91174 0.90056 0.91488 0.91355 0.89683 0.90123 0.94359 0.90091 0.89730 0.95793 0.96387 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.32 60.06 0.56 0.82 16 2 N -0.54 -5.76 4.00 -242.58 -0.97 -6.73 16 3 C 0.06 0.75 5.30 -2.90 -0.02 0.73 16 4 C -0.11 -1.37 6.29 -25.67 -0.16 -1.53 16 5 C 0.14 1.75 2.51 -68.70 -0.17 1.58 16 6 H 0.06 0.87 7.98 -51.93 -0.41 0.45 16 7 C -0.11 -1.05 6.64 -26.88 -0.18 -1.23 16 8 C -0.11 -1.05 6.20 -25.45 -0.16 -1.20 16 9 C 0.13 1.51 3.43 -66.43 -0.23 1.29 16 10 H 0.10 1.08 7.74 -51.93 -0.40 0.68 16 11 C 0.04 0.47 4.27 -4.34 -0.02 0.45 16 12 N -0.62 -9.27 1.85 -157.32 -0.29 -9.56 16 13 C 0.53 10.34 6.98 -10.98 -0.08 10.27 16 14 O -0.54 -12.48 16.33 5.56 0.09 -12.39 16 15 C -0.12 -2.34 4.81 -27.88 -0.13 -2.47 16 16 C 0.00 0.05 3.33 -27.89 -0.09 -0.04 16 17 C -0.52 -15.18 9.66 -34.44 -0.33 -15.51 16 18 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 19 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 20 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 21 Si 0.88 22.88 27.47 -169.99 -4.67 18.21 16 22 H -0.28 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.26 -6.81 6.54 56.52 0.37 -6.44 16 25 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.07 0.53 7.97 -51.93 -0.41 0.12 16 27 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 28 H 0.06 0.66 7.48 -51.92 -0.39 0.27 16 29 H 0.05 0.76 5.95 -51.93 -0.31 0.45 16 30 H 0.07 0.74 7.63 -51.93 -0.40 0.34 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.69 7.61 -51.93 -0.40 0.29 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.71 7.41 -51.93 -0.38 0.33 16 36 H 0.08 0.73 7.98 -51.93 -0.41 0.31 16 37 H 0.04 0.50 7.40 -51.92 -0.38 0.11 16 38 H 0.08 1.55 7.68 -51.93 -0.40 1.15 16 39 H 0.08 1.60 8.03 -51.93 -0.42 1.18 16 40 H 0.02 0.64 7.15 -51.93 -0.37 0.27 16 41 H 0.02 0.47 7.53 -51.93 -0.39 0.08 16 42 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 321.09 15.07 4.84 4.84 Total: -1.00 -33.60 321.09 -8.51 -42.11 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -7.18 Total: -4.19 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.11 Total: -4.86 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: -0.49 Total: -43.71 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.67 Total: 18.21 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.60 -8.51 -42.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923266455.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.134 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds