Wall clock time and date at job start Mon Mar 30 2020 01:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.45929 * 111.00122 * 2 1 4 4 C 1.55726 * 111.52035 * 222.17851 * 3 2 1 5 5 C 1.52235 * 108.08141 * 301.59046 * 4 3 2 6 6 H 1.09001 * 106.82416 * 216.03665 * 5 4 3 7 7 C 1.51293 * 115.64128 * 97.56156 * 5 4 3 8 8 C 1.54360 * 104.62901 * 255.90169 * 7 5 4 9 9 C 1.54097 * 105.27387 * 353.50088 * 8 7 5 10 10 H 1.08998 * 110.97167 * 227.24325 * 9 8 7 11 11 C 1.46771 * 111.00069 * 124.61465 * 2 1 3 12 12 N 1.47372 * 110.58081 * 332.05655 * 5 4 3 13 13 C 1.34780 * 127.92021 * 280.76560 * 12 5 4 14 14 O 1.21280 * 120.00423 * 359.69747 * 13 12 5 15 15 C 1.50701 * 119.99795 * 179.70424 * 13 12 5 16 16 C 1.52997 * 109.47212 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47466 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00362 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 119.99850 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.47052 * 89.99717 * 21 19 17 23 23 H 1.48495 * 109.47307 * 209.99656 * 21 19 17 24 24 H 1.48500 * 109.47143 * 330.00164 * 21 19 17 25 25 H 1.08997 * 109.47386 * 295.38790 * 1 2 3 26 26 H 1.08994 * 109.47150 * 55.38930 * 1 2 3 27 27 H 1.09001 * 109.47320 * 175.38607 * 1 2 3 28 28 H 1.09009 * 109.06896 * 342.70065 * 3 2 1 29 29 H 1.08994 * 109.07195 * 101.65151 * 3 2 1 30 30 H 1.09002 * 109.72170 * 61.25009 * 4 3 2 31 31 H 1.08994 * 109.72983 * 181.87322 * 4 3 2 32 32 H 1.08998 * 110.41509 * 15.19612 * 7 5 4 33 33 H 1.09002 * 110.41074 * 137.64397 * 7 5 4 34 34 H 1.08996 * 111.32031 * 234.05043 * 8 7 5 35 35 H 1.09003 * 109.34934 * 111.93842 * 8 7 5 36 36 H 1.08998 * 108.93401 * 47.12183 * 11 2 1 37 37 H 1.09008 * 108.85461 * 288.48816 * 11 2 1 38 38 H 1.09002 * 109.47060 * 299.99722 * 15 13 12 39 39 H 1.09001 * 109.47380 * 59.99809 * 15 13 12 40 40 H 1.09002 * 109.47153 * 299.99998 * 16 15 13 41 41 H 1.08998 * 109.47533 * 59.99628 * 16 15 13 42 42 H 0.96994 * 119.99814 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9920 1.3624 0.0000 4 6 3.1990 1.5109 -0.9727 5 6 4.2775 0.5271 -0.5411 6 1 5.2370 1.0135 -0.7170 7 6 4.3105 -0.7822 -1.2985 8 6 3.6870 -1.8091 -0.3293 9 6 3.4864 -1.0475 0.9951 10 1 3.8542 -1.6301 1.8397 11 6 1.9950 -0.7784 1.1277 12 7 4.1889 0.2633 0.9062 13 6 4.6357 1.0340 1.9175 14 8 5.1930 2.0845 1.6790 15 6 4.4430 0.5904 3.3448 16 6 5.0370 1.6376 4.2890 17 6 4.8438 1.1944 5.7162 18 1 4.3473 0.2591 5.9287 19 6 5.3017 1.9824 6.7509 20 7 5.1335 1.5953 7.9965 21 14 6.1623 3.5991 6.3833 22 1 5.1587 4.6920 6.3249 23 1 7.1486 3.8896 7.4548 24 1 6.8637 3.5009 5.0781 25 1 -0.3634 0.4406 0.9284 26 1 -0.3633 0.5837 -0.8457 27 1 -0.3634 -1.0243 -0.0827 28 1 1.2013 2.0474 -0.3064 29 1 2.3138 1.6203 1.0089 30 1 2.8809 1.2858 -1.9907 31 1 3.5868 2.5284 -0.9251 32 1 3.7234 -0.7068 -2.2138 33 1 5.3386 -1.0632 -1.5273 34 1 4.3477 -2.6625 -0.1774 35 1 2.7262 -2.1404 -0.7233 36 1 1.4668 -1.7305 1.1772 37 1 1.8158 -0.2266 2.0506 38 1 3.3783 0.4782 3.5498 39 1 4.9454 -0.3644 3.4996 40 1 6.1017 1.7494 4.0838 41 1 4.5351 2.5927 4.1344 42 1 5.4553 2.1499 8.7243 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000923266455.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:46 Heat of formation + Delta-G solvation = -48.101327 kcal Electronic energy + Delta-G solvation = -21606.342669 eV Core-core repulsion = 18585.271821 eV Total energy + Delta-G solvation = -3021.070848 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.86060 -39.44886 -36.88611 -35.63604 -34.14987 -33.33310 -32.53573 -29.66545 -28.22213 -26.86949 -25.80303 -24.07300 -22.62937 -22.06547 -20.74629 -19.74823 -19.09945 -18.04905 -17.12547 -16.58618 -16.32370 -16.20267 -15.88946 -15.73763 -14.97316 -14.94734 -14.77441 -14.59989 -14.20980 -13.82194 -13.71991 -13.42961 -12.99883 -12.81616 -12.76033 -12.56214 -12.31717 -12.17320 -12.13130 -12.03790 -11.84128 -11.76886 -11.51970 -11.45475 -11.09579 -10.82665 -10.80160 -9.67530 -9.28615 -8.35957 -6.39119 1.28684 1.30724 1.46217 1.60926 1.94119 2.30847 2.88249 2.99323 3.42908 3.69267 3.88492 3.99060 4.00317 4.13387 4.20820 4.27183 4.35854 4.37970 4.44610 4.50754 4.58661 4.72861 4.77136 4.81182 4.86006 4.90864 4.97145 5.03431 5.06188 5.16524 5.17614 5.23732 5.29367 5.35118 5.41503 5.54763 5.61351 6.06529 6.12902 6.18650 6.56622 6.66438 7.18733 7.26320 8.79706 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.026235 B = 0.005176 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.016392 B = 5408.461162 C = 5603.279629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.529 5.529 3 C 0.063 3.937 4 C -0.109 4.109 5 C 0.131 3.869 6 H 0.034 0.966 7 C -0.101 4.101 8 C -0.104 4.104 9 C 0.119 3.881 10 H 0.100 0.900 11 C 0.044 3.956 12 N -0.612 5.612 13 C 0.533 3.467 14 O -0.588 6.588 15 C -0.106 4.106 16 C 0.009 3.991 17 C -0.530 4.530 18 H 0.050 0.950 19 C 0.018 3.982 20 N -0.941 5.941 21 Si 0.936 3.064 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.264 1.264 25 H 0.013 0.987 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.009 0.991 30 H 0.101 0.899 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.011 0.989 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.009 0.991 41 H 0.005 0.995 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.697 -8.550 -22.653 25.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.253 5.253 3 C -0.066 4.066 4 C -0.148 4.148 5 C 0.028 3.972 6 H 0.052 0.948 7 C -0.139 4.139 8 C -0.142 4.142 9 C 0.016 3.984 10 H 0.118 0.882 11 C -0.085 4.085 12 N -0.346 5.346 13 C 0.324 3.676 14 O -0.468 6.468 15 C -0.146 4.146 16 C -0.029 4.029 17 C -0.568 4.568 18 H 0.069 0.931 19 C -0.180 4.180 20 N -0.581 5.581 21 Si 0.760 3.240 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.189 1.189 25 H 0.032 0.968 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.027 0.973 30 H 0.120 0.880 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.029 0.971 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.028 0.972 41 H 0.023 0.977 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.176 -8.105 -22.922 25.650 hybrid contribution 0.255 1.573 1.477 2.173 sum -7.921 -6.532 -21.444 23.775 Atomic orbital electron populations 1.22486 0.85621 1.03502 1.00290 1.61126 1.08267 1.12635 1.43301 1.22283 0.96984 0.89976 0.97403 1.22228 0.94430 0.97664 1.00484 1.20965 0.98052 0.97954 0.80228 0.94799 1.21803 1.01981 0.91419 0.98667 1.22364 1.03292 0.96973 0.91536 1.22332 0.90899 0.83750 1.01455 0.88155 1.22413 0.95685 0.99526 0.90886 1.49151 1.57497 1.21956 1.05974 1.20731 0.76649 0.82824 0.87359 1.90626 1.45065 1.25520 1.85594 1.21418 1.03040 1.01212 0.88888 1.19194 0.95866 0.94632 0.93237 1.21363 1.37934 1.07026 0.90429 0.93133 1.25751 0.96194 1.01322 0.94751 1.70010 1.48488 1.40049 0.99544 0.85871 0.79384 0.80335 0.78394 1.19397 1.19888 1.18888 0.96845 0.90380 0.89374 0.91429 0.97251 0.88030 0.93200 0.87843 0.90809 0.89657 0.87910 0.87169 0.97057 0.89166 0.88314 0.97221 0.97703 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.32 127.69 1.19 1.61 16 2 N -0.53 -9.98 4.00 -921.39 -3.69 -13.67 16 3 C 0.06 1.51 5.30 87.43 0.46 1.97 16 4 C -0.11 -2.51 6.29 31.28 0.20 -2.31 16 5 C 0.13 3.24 2.51 44.01 0.11 3.35 16 6 H 0.03 1.00 7.98 -2.39 -0.02 0.98 16 7 C -0.10 -1.61 6.64 30.50 0.20 -1.41 16 8 C -0.10 -1.48 6.20 31.43 0.19 -1.28 16 9 C 0.12 2.49 3.43 44.59 0.15 2.65 16 10 H 0.10 2.04 7.74 -2.39 -0.02 2.02 16 11 C 0.04 0.87 4.27 86.04 0.37 1.23 16 12 N -0.61 -18.07 1.85 -770.04 -1.42 -19.50 16 13 C 0.53 21.18 6.98 87.66 0.61 21.79 16 14 O -0.59 -28.30 16.33 -3.03 -0.05 -28.35 16 15 C -0.11 -4.38 4.81 29.85 0.14 -4.24 16 16 C 0.01 0.45 3.33 29.85 0.10 0.55 16 17 C -0.53 -31.40 9.66 25.60 0.25 -31.15 16 18 H 0.05 3.14 7.99 -2.91 -0.02 3.11 16 19 C 0.02 1.08 5.47 84.65 0.46 1.55 16 20 N -0.94 -59.48 13.96 21.45 0.30 -59.18 16 21 Si 0.94 47.81 27.47 68.60 1.88 49.69 16 22 H -0.27 -13.31 7.11 99.48 0.71 -12.60 16 23 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 24 H -0.26 -13.58 6.54 99.48 0.65 -12.93 16 25 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 26 H 0.08 1.00 7.97 -2.39 -0.02 0.98 16 27 H 0.09 0.97 8.09 -2.39 -0.02 0.95 16 28 H 0.07 1.47 7.48 -2.38 -0.02 1.45 16 29 H 0.01 0.29 5.95 -2.39 -0.01 0.28 16 30 H 0.10 1.75 7.63 -2.39 -0.02 1.73 16 31 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.10 1.27 7.61 -2.39 -0.02 1.25 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 1.18 7.41 -2.39 -0.02 1.16 16 36 H 0.11 1.57 7.98 -2.39 -0.02 1.55 16 37 H 0.01 0.29 7.40 -2.38 -0.02 0.27 16 38 H 0.09 3.53 7.68 -2.39 -0.02 3.51 16 39 H 0.10 3.75 8.03 -2.39 -0.02 3.73 16 40 H 0.01 0.52 7.15 -2.39 -0.02 0.50 16 41 H 0.00 0.25 7.53 -2.39 -0.02 0.23 16 42 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -74.79 321.09 2.39 -72.40 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 0.92 Total: 4.29 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: 4.44 Total: -5.69 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -4.81 Total: -92.34 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.05 Total: -28.35 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.88 Total: 49.69 kcal Total: -74.79 2.39 -72.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000923266455.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.298 kcal (2) G-P(sol) polarization free energy of solvation -74.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds