Wall clock time and date at job start Mon Mar 30 2020 00:43:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31010 * 1 3 3 C 1.50699 * 119.99778 * 2 1 4 4 C 1.53000 * 109.46728 * 125.00406 * 3 2 1 5 5 H 1.09005 * 112.78265 * 294.18185 * 4 3 2 6 6 C 1.53519 * 113.47413 * 163.38113 * 4 3 2 7 7 C 1.53513 * 83.57024 * 219.20643 * 6 4 3 8 8 N 1.47470 * 87.93499 * 26.02439 * 7 6 4 9 9 C 1.46903 * 110.99895 * 221.29709 * 8 7 6 10 10 C 1.50700 * 109.47140 * 294.38460 * 9 8 7 11 11 O 1.21283 * 119.99670 * 353.84739 * 10 9 8 12 12 N 1.34779 * 119.99940 * 173.84384 * 10 9 8 13 13 C 1.46494 * 120.00097 * 0.02562 * 12 10 9 14 14 C 1.53006 * 109.47182 * 269.99891 * 13 12 10 15 15 C 1.46507 * 119.99679 * 180.02562 * 12 10 9 16 16 C 1.50698 * 109.46938 * 90.00077 * 15 12 10 17 17 H 1.08001 * 120.00641 * 359.97438 * 16 15 12 18 18 C 1.37883 * 119.99597 * 179.97438 * 16 15 12 19 19 N 1.31506 * 120.00116 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99648 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46838 * 90.00419 * 20 18 16 22 22 H 1.48502 * 109.47047 * 209.99857 * 20 18 16 23 23 H 1.48494 * 109.47535 * 330.00003 * 20 18 16 24 24 H 1.07998 * 119.99853 * 359.97438 * 1 2 3 25 25 H 1.07999 * 119.99384 * 179.97438 * 1 2 3 26 26 H 1.07998 * 119.99853 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.46864 * 5.00204 * 3 2 1 28 28 H 1.09002 * 109.46793 * 244.99913 * 3 2 1 29 29 H 1.09002 * 114.17257 * 105.55933 * 6 4 3 30 30 H 1.08998 * 114.16693 * 332.85507 * 6 4 3 31 31 H 1.09008 * 113.47199 * 271.25168 * 7 6 4 32 32 H 1.08995 * 113.52557 * 140.80457 * 7 6 4 33 33 H 1.08998 * 109.47366 * 174.38603 * 9 8 7 34 34 H 1.09004 * 109.47207 * 54.38547 * 9 8 7 35 35 H 1.08994 * 109.47053 * 29.99571 * 13 12 10 36 36 H 1.09002 * 109.46813 * 150.00297 * 13 12 10 37 37 H 1.09005 * 109.46632 * 300.00257 * 14 13 12 38 38 H 1.09003 * 109.46856 * 59.99685 * 14 13 12 39 39 H 1.08995 * 109.47262 * 180.02562 * 14 13 12 40 40 H 1.08999 * 109.46909 * 330.00035 * 15 12 10 41 41 H 1.08998 * 109.46774 * 209.99717 * 15 12 10 42 42 H 0.96998 * 120.00189 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 1 2.5269 1.3406 2.1459 6 6 4.1218 2.4099 1.0545 7 6 5.0262 1.3228 1.6517 8 7 4.1031 0.3203 1.0882 9 6 3.8731 -0.7764 2.0382 10 6 5.1573 -1.5364 2.2486 11 8 6.1356 -1.2699 1.5830 12 7 5.2187 -2.5121 3.1763 13 6 4.0369 -2.8343 3.9798 14 6 4.0348 -1.9798 5.2491 15 6 6.4674 -3.2506 3.3811 16 6 7.2986 -2.5517 4.4260 17 1 6.9336 -1.6477 4.8907 18 6 8.5252 -3.0665 4.7887 19 7 8.9699 -4.1670 4.2225 20 14 9.5559 -2.1998 6.0833 21 1 9.2134 -2.7324 7.4266 22 1 10.9961 -2.4366 5.8094 23 1 9.2776 -0.7418 6.0431 24 1 -0.5400 0.9353 0.0004 25 1 -0.5399 -0.9354 -0.0004 26 1 1.8501 -0.9353 -0.0004 27 1 1.3586 2.1316 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 3.9730 3.2729 1.7035 30 1 4.3658 2.6786 0.0267 31 1 5.0494 1.3277 2.7415 32 1 6.0218 1.2936 1.2091 33 1 3.1139 -1.4492 1.6396 34 1 3.5328 -0.3675 2.9897 35 1 3.1367 -2.6274 3.4012 36 1 4.0594 -3.8895 4.2522 37 1 4.9351 -2.1867 5.8278 38 1 4.0124 -0.9246 4.9767 39 1 3.1557 -2.2198 5.8472 40 1 7.0223 -3.2930 2.4439 41 1 6.2401 -4.2629 3.7151 42 1 9.8327 -4.5293 4.4779 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934469170.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:53 Heat of formation + Delta-G solvation = -2.803451 kcal Electronic energy + Delta-G solvation = -20972.359165 eV Core-core repulsion = 17953.252581 eV Total energy + Delta-G solvation = -3019.106584 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.65956 -40.03755 -36.94557 -35.44199 -34.89413 -32.32834 -31.44837 -29.46244 -29.12536 -26.44536 -24.41481 -24.29441 -23.92202 -20.84279 -20.44574 -19.88444 -18.70631 -17.95192 -17.47564 -16.97783 -16.51924 -16.12290 -15.84456 -15.39778 -15.26496 -14.66685 -14.49372 -14.22450 -13.92027 -13.74715 -13.49299 -13.23643 -13.08116 -13.05704 -12.90618 -12.74660 -12.56668 -12.32906 -12.20343 -11.94632 -11.83296 -11.75863 -11.63830 -11.19018 -10.63961 -10.54817 -10.15378 -9.75877 -9.44075 -8.22313 -6.35874 1.33902 1.37116 1.46959 1.49507 1.82540 2.24647 2.40439 3.04745 3.07343 3.48006 3.66145 3.87729 4.07806 4.13455 4.20916 4.28359 4.36978 4.41873 4.46930 4.47657 4.56580 4.58934 4.80850 4.85656 4.92603 4.98098 5.00602 5.03412 5.11077 5.20836 5.21897 5.27697 5.37766 5.46491 5.59344 5.83908 5.86247 5.97108 6.06721 6.10456 6.70998 6.80393 7.29119 7.50792 8.85151 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.025848 B = 0.004860 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.010450 B = 5760.274047 C = 6172.523307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.162 4.162 3 C -0.071 4.071 4 C 0.037 3.963 5 H 0.091 0.909 6 C -0.124 4.124 7 C -0.001 4.001 8 N -0.469 5.469 9 C 0.018 3.982 10 C 0.496 3.504 11 O -0.582 6.582 12 N -0.606 5.606 13 C 0.104 3.896 14 C -0.162 4.162 15 C 0.262 3.738 16 C -0.531 4.531 17 H 0.054 0.946 18 C 0.006 3.994 19 N -0.930 5.930 20 Si 0.965 3.035 21 H -0.263 1.263 22 H -0.282 1.282 23 H -0.273 1.273 24 H 0.109 0.891 25 H 0.100 0.900 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.118 0.882 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.040 0.960 38 H 0.049 0.951 39 H 0.093 0.907 40 H -0.007 1.007 41 H 0.021 0.979 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.303 11.156 -2.315 22.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.180 4.180 3 C -0.108 4.108 4 C -0.072 4.072 5 H 0.109 0.891 6 C -0.162 4.162 7 C -0.131 4.131 8 N -0.192 5.192 9 C -0.113 4.113 10 C 0.284 3.716 11 O -0.462 6.462 12 N -0.338 5.338 13 C -0.019 4.019 14 C -0.220 4.220 15 C 0.141 3.859 16 C -0.570 4.570 17 H 0.072 0.928 18 C -0.193 4.193 19 N -0.571 5.571 20 Si 0.789 3.211 21 H -0.188 1.188 22 H -0.208 1.208 23 H -0.198 1.198 24 H 0.127 0.873 25 H 0.118 0.882 26 H 0.110 0.890 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.136 0.864 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.011 0.989 41 H 0.039 0.961 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.510 10.769 -3.274 21.664 hybrid contribution 1.189 -0.126 1.383 1.829 sum -17.321 10.643 -1.891 20.418 Atomic orbital electron populations 1.23989 0.95425 1.02591 1.00751 1.22932 0.96187 0.98569 1.00316 1.20657 0.97036 0.95829 0.97281 1.23535 0.92931 0.91011 0.99740 0.89080 1.23221 0.94112 0.96168 1.02703 1.23570 0.98307 0.93086 0.98100 1.68891 1.07114 1.03674 1.39545 1.22632 0.94456 0.96486 0.97714 1.21154 0.90589 0.80503 0.79368 1.90640 1.39806 1.66985 1.48770 1.48312 1.13433 1.35725 1.36339 1.21731 0.86886 1.00565 0.92672 1.22149 1.02643 0.99441 0.97745 1.18720 0.81458 0.90927 0.94839 1.21657 1.03401 1.10188 1.21761 0.92759 1.25850 0.98683 0.95756 0.98965 1.70054 1.20700 1.22260 1.44045 0.85458 0.77672 0.78676 0.79276 1.18777 1.20757 1.19800 0.87285 0.88205 0.88976 0.88813 0.91104 0.88242 0.88502 0.92353 0.92598 0.86411 0.89695 0.88086 0.90499 0.94126 0.93223 0.88823 0.98899 0.96117 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.79 14.32 67.77 0.97 -1.82 16 2 C -0.16 -2.95 9.18 25.64 0.24 -2.71 16 3 C -0.07 -1.21 5.71 29.85 0.17 -1.04 16 4 C 0.04 0.73 3.05 42.18 0.13 0.86 16 5 H 0.09 1.59 7.63 -2.38 -0.02 1.57 16 6 C -0.12 -2.50 8.01 30.94 0.25 -2.25 16 7 C 0.00 -0.04 6.34 83.57 0.53 0.49 16 8 N -0.47 -13.90 5.81 -906.80 -5.27 -19.17 16 9 C 0.02 0.55 3.78 85.56 0.32 0.87 16 10 C 0.50 21.46 7.35 87.66 0.64 22.10 16 11 O -0.58 -31.61 14.98 -3.04 -0.05 -31.66 16 12 N -0.61 -26.31 2.46 -826.15 -2.03 -28.34 16 13 C 0.10 3.19 5.89 86.38 0.51 3.70 16 14 C -0.16 -4.60 10.18 71.98 0.73 -3.86 16 15 C 0.26 14.50 5.20 85.63 0.45 14.94 16 16 C -0.53 -30.93 8.92 25.60 0.23 -30.70 16 17 H 0.05 3.12 7.42 -2.91 -0.02 3.10 16 18 C 0.01 0.35 5.46 84.66 0.46 0.82 16 19 N -0.93 -57.34 13.29 21.45 0.28 -57.05 16 20 Si 0.96 45.55 29.54 68.60 2.03 47.58 16 21 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 24 H 0.11 1.25 7.84 -2.91 -0.02 1.23 16 25 H 0.10 1.34 8.06 -2.91 -0.02 1.31 16 26 H 0.09 2.00 7.08 -2.91 -0.02 1.98 16 27 H 0.09 1.16 7.79 -2.39 -0.02 1.14 16 28 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 29 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.10 1.88 8.07 -2.39 -0.02 1.86 16 31 H 0.06 1.79 7.84 -2.38 -0.02 1.78 16 32 H 0.06 2.08 7.96 -2.39 -0.02 2.06 16 33 H 0.12 3.02 6.65 -2.39 -0.02 3.00 16 34 H 0.09 2.16 6.27 -2.38 -0.01 2.14 16 35 H 0.10 2.30 6.61 -2.39 -0.02 2.28 16 36 H 0.08 2.34 7.89 -2.39 -0.02 2.32 16 37 H 0.04 1.45 7.26 -2.38 -0.02 1.43 16 38 H 0.05 1.36 7.12 -2.39 -0.02 1.34 16 39 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 40 H -0.01 -0.46 7.42 -2.39 -0.02 -0.48 16 41 H 0.02 1.17 7.89 -2.39 -0.02 1.15 16 42 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -75.56 340.29 1.57 -74.00 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.97 Total: 13.24 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 5.63 Total: 1.40 kcal Atomic # 7 Polarization: -97.54 SS G_CDS: -7.02 Total: -104.56 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.05 Total: -31.66 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -75.56 1.57 -74.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934469170.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.194 kcal (2) G-P(sol) polarization free energy of solvation -75.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds