Wall clock time and date at job start Mon Mar 30 2020 00:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00182 * 2 1 4 4 C 1.52997 * 109.47338 * 124.99622 * 3 2 1 5 5 H 1.08997 * 112.74897 * 65.77523 * 4 3 2 6 6 C 1.53521 * 113.52924 * 196.59123 * 4 3 2 7 7 C 1.53511 * 83.57309 * 140.80053 * 6 4 3 8 8 N 1.47473 * 113.47740 * 294.99471 * 4 3 2 9 9 C 1.46902 * 110.99654 * 106.47095 * 8 4 3 10 10 C 1.50702 * 109.47027 * 170.00034 * 9 8 4 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72353 * 10 9 8 13 13 C 1.46506 * 120.00264 * 0.28128 * 12 10 9 14 14 C 1.52998 * 109.47320 * 89.99349 * 13 12 10 15 15 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 16 16 C 1.50697 * 109.46949 * 90.00203 * 15 12 10 17 17 H 1.08004 * 120.00186 * 0.02562 * 16 15 12 18 18 C 1.37881 * 120.00081 * 180.02562 * 16 15 12 19 19 N 1.31517 * 119.99813 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00047 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47231 * 89.99796 * 20 18 16 22 22 H 1.48499 * 109.47342 * 210.00322 * 20 18 16 23 23 H 1.48505 * 109.46935 * 330.00024 * 20 18 16 24 24 H 1.08000 * 119.99727 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.99914 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.00216 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.47170 * 4.99329 * 3 2 1 28 28 H 1.09000 * 109.47086 * 244.99705 * 3 2 1 29 29 H 1.09000 * 114.16673 * 254.44562 * 6 4 3 30 30 H 1.08997 * 114.17088 * 26.95863 * 6 4 3 31 31 H 1.09005 * 113.47309 * 219.21166 * 7 6 4 32 32 H 1.08996 * 113.47832 * 88.74376 * 7 6 4 33 33 H 1.09004 * 109.47131 * 50.00278 * 9 8 4 34 34 H 1.08994 * 109.47471 * 290.00028 * 9 8 4 35 35 H 1.08994 * 109.46996 * 209.99677 * 13 12 10 36 36 H 1.09001 * 109.46578 * 329.99540 * 13 12 10 37 37 H 1.09004 * 109.46895 * 60.00075 * 14 13 12 38 38 H 1.08992 * 109.47180 * 180.02562 * 14 13 12 39 39 H 1.08997 * 109.47106 * 300.00561 * 14 13 12 40 40 H 1.09001 * 109.47567 * 210.00057 * 15 12 10 41 41 H 1.09005 * 109.47076 * 330.00563 * 15 12 10 42 42 H 0.97004 * 119.99796 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 3.8268 0.5892 1.0941 6 6 3.5516 2.7393 1.5171 7 6 3.3995 2.2615 2.9680 8 7 2.3635 1.3248 2.4946 9 6 2.4996 0.0157 3.1471 10 6 2.0229 0.1134 4.5734 11 8 1.6100 1.1694 5.0039 12 7 2.0498 -0.9743 5.3689 13 6 2.5481 -2.2501 4.8489 14 6 4.0548 -2.3480 5.0960 15 6 1.5808 -0.8808 6.7536 16 6 0.1068 -1.1897 6.8066 17 1 -0.4272 -1.4319 5.8996 18 6 -0.5602 -1.1632 8.0131 19 7 -1.8465 -1.4333 8.0594 20 14 0.3631 -0.7437 9.5818 21 1 0.3163 0.7234 9.8065 22 1 -0.2697 -1.4408 10.7302 23 1 1.7769 -1.1802 9.4558 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1317 0.0894 28 1 2.6213 1.4025 -0.9314 29 1 4.5824 2.9205 1.2126 30 1 2.8719 3.5435 1.2353 31 1 3.0163 3.0293 3.6401 32 1 4.2885 1.7652 3.3572 33 1 3.5458 -0.2899 3.1338 34 1 1.8991 -0.7207 2.6130 35 1 2.0425 -3.0716 5.3563 36 1 2.3509 -2.3079 3.7784 37 1 4.2519 -2.2901 6.1665 38 1 4.4256 -3.2969 4.7087 39 1 4.5603 -1.5264 4.5886 40 1 2.1243 -1.5965 7.3705 41 1 1.7543 0.1278 7.1287 42 1 -2.3157 -1.4150 8.9082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934469171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:56 Heat of formation + Delta-G solvation = 24.429832 kcal Electronic energy + Delta-G solvation = -20982.123783 eV Core-core repulsion = 17964.198122 eV Total energy + Delta-G solvation = -3017.925661 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.48102 -38.60507 -35.31882 -34.53259 -32.73834 -31.09356 -30.25013 -28.51743 -27.74964 -24.96486 -23.38682 -22.96847 -21.92751 -19.82612 -19.63969 -18.30987 -16.89349 -16.58887 -16.17602 -15.59694 -15.23819 -14.82895 -14.49997 -13.93271 -13.76868 -13.57826 -13.47603 -12.97227 -12.71690 -12.37432 -12.29384 -11.87523 -11.83815 -11.67086 -11.47255 -11.28463 -11.07672 -11.03455 -10.88972 -10.65077 -10.48110 -10.43367 -10.12505 -9.50348 -9.26322 -8.91641 -8.62684 -8.55410 -7.66844 -6.05129 -4.03368 2.38705 3.30821 3.36611 3.38595 3.40413 3.68665 4.14065 4.42169 4.43397 4.67622 4.99080 5.08342 5.15025 5.20514 5.23152 5.28412 5.34944 5.37265 5.43216 5.50103 5.55302 5.62093 5.68560 5.73778 5.89834 5.96021 5.98082 6.03765 6.14037 6.18277 6.37427 6.43408 6.70847 6.72436 6.85422 6.96821 7.12179 7.41330 7.65236 8.31117 8.51485 8.98198 9.07534 9.55389 11.08444 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021365 B = 0.005132 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.264233 B = 5454.533876 C = 5638.506652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.157 4.157 3 C -0.074 4.074 4 C 0.028 3.972 5 H 0.075 0.925 6 C -0.142 4.142 7 C 0.005 3.995 8 N -0.438 5.438 9 C 0.004 3.996 10 C 0.510 3.490 11 O -0.523 6.523 12 N -0.596 5.596 13 C 0.107 3.893 14 C -0.169 4.169 15 C 0.218 3.782 16 C -0.526 4.526 17 H 0.074 0.926 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.876 3.124 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.267 1.267 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.102 0.898 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.048 0.952 40 H 0.028 0.972 41 H 0.035 0.965 42 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.807 1.454 -15.104 20.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.175 4.175 3 C -0.112 4.112 4 C -0.081 4.081 5 H 0.093 0.907 6 C -0.180 4.180 7 C -0.123 4.123 8 N -0.161 5.161 9 C -0.128 4.128 10 C 0.296 3.704 11 O -0.399 6.399 12 N -0.329 5.329 13 C -0.018 4.018 14 C -0.227 4.227 15 C 0.097 3.903 16 C -0.565 4.565 17 H 0.092 0.908 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.192 1.192 24 H 0.112 0.888 25 H 0.114 0.886 26 H 0.120 0.880 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.046 0.954 41 H 0.053 0.947 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.692 2.132 -14.634 19.488 hybrid contribution 1.091 -0.473 0.976 1.539 sum 13.783 1.660 -13.658 19.475 Atomic orbital electron populations 1.23819 0.95991 1.01801 1.00234 1.22746 0.96070 0.97926 1.00745 1.20648 0.97828 0.96235 0.96451 1.23441 0.95326 0.97315 0.92047 0.90735 1.23235 1.01306 0.96806 0.96653 1.23645 0.94050 0.97618 0.97037 1.68880 1.39037 1.06372 1.01809 1.22662 1.00459 0.94550 0.95083 1.20103 0.79303 0.84291 0.86696 1.90666 1.45623 1.28585 1.74987 1.47941 1.62432 1.08424 1.14109 1.21416 0.93566 0.87768 0.99005 1.22231 0.96870 1.01133 1.02492 1.19610 0.95658 0.97454 0.77533 1.21344 0.92074 1.47462 0.95605 0.90789 1.24859 0.94737 0.94614 0.98822 1.69905 1.08261 1.49322 1.26187 0.86852 0.80299 0.79233 0.83291 1.19934 1.21097 1.19151 0.88775 0.88571 0.88046 0.90689 0.90906 0.90884 0.88828 0.89027 0.91962 0.92198 0.88266 0.89713 0.91633 0.92183 0.91997 0.93265 0.95407 0.94735 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 14.32 29.02 0.42 -1.76 16 2 C -0.16 -1.75 8.74 -36.03 -0.31 -2.06 16 3 C -0.07 -0.76 5.72 -27.89 -0.16 -0.92 16 4 C 0.03 0.31 3.05 -71.43 -0.22 0.09 16 5 H 0.07 0.73 7.77 -51.93 -0.40 0.32 16 6 C -0.14 -1.45 8.01 -26.20 -0.21 -1.66 16 7 C 0.01 0.07 6.71 -7.55 -0.05 0.02 16 8 N -0.44 -6.64 5.70 -237.95 -1.36 -8.00 16 9 C 0.00 0.06 3.76 -4.97 -0.02 0.05 16 10 C 0.51 10.75 7.51 -10.98 -0.08 10.66 16 11 O -0.52 -13.33 15.34 5.55 0.09 -13.25 16 12 N -0.60 -12.50 2.46 -175.06 -0.43 -12.93 16 13 C 0.11 1.69 5.94 -4.04 -0.02 1.66 16 14 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 15 C 0.22 5.45 4.23 -5.20 -0.02 5.43 16 16 C -0.53 -15.47 9.94 -34.44 -0.34 -15.82 16 17 H 0.07 2.40 8.06 -52.48 -0.42 1.97 16 18 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 19 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 20 Si 0.88 21.97 27.47 -169.99 -4.67 17.31 16 21 H -0.27 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 24 H 0.09 1.06 8.06 -52.49 -0.42 0.64 16 25 H 0.10 1.16 7.84 -52.49 -0.41 0.74 16 26 H 0.10 1.02 8.06 -52.49 -0.42 0.60 16 27 H 0.07 0.84 7.73 -51.93 -0.40 0.44 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.95 8.08 -51.93 -0.42 0.53 16 31 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 32 H 0.06 0.79 7.70 -51.93 -0.40 0.39 16 33 H 0.06 0.78 6.63 -51.93 -0.34 0.44 16 34 H 0.10 1.49 6.85 -51.93 -0.36 1.13 16 35 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 36 H 0.07 0.89 6.43 -51.93 -0.33 0.55 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.59 7.24 -51.93 -0.38 0.21 16 40 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 41 H 0.03 0.93 6.85 -51.93 -0.36 0.57 16 42 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 340.82 15.07 5.14 5.14 Total: -1.00 -34.70 340.82 -8.34 -43.05 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.14 Total: 0.15 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -0.74 Total: -4.02 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -1.01 Total: -48.37 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.70 -8.34 -43.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934469171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.478 kcal (2) G-P(sol) polarization free energy of solvation -34.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds