Wall clock time and date at job start Mon Mar 30 2020 00:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50698 * 120.00182 * 2 1 4 4 C 1.52997 * 109.47338 * 124.99622 * 3 2 1 5 5 H 1.08997 * 112.74897 * 65.77523 * 4 3 2 6 6 C 1.53521 * 113.52924 * 196.59123 * 4 3 2 7 7 C 1.53511 * 83.57309 * 140.80053 * 6 4 3 8 8 N 1.47473 * 113.47740 * 294.99471 * 4 3 2 9 9 C 1.46902 * 110.99654 * 106.47095 * 8 4 3 10 10 C 1.50702 * 109.47027 * 170.00034 * 9 8 4 11 11 O 1.21283 * 120.00262 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99928 * 179.72353 * 10 9 8 13 13 C 1.46506 * 120.00264 * 0.28128 * 12 10 9 14 14 C 1.52998 * 109.47320 * 89.99349 * 13 12 10 15 15 C 1.46499 * 120.00199 * 180.27479 * 12 10 9 16 16 C 1.50697 * 109.46949 * 90.00203 * 15 12 10 17 17 H 1.08004 * 120.00186 * 0.02562 * 16 15 12 18 18 C 1.37881 * 120.00081 * 180.02562 * 16 15 12 19 19 N 1.31517 * 119.99813 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00047 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47231 * 89.99796 * 20 18 16 22 22 H 1.48499 * 109.47342 * 210.00322 * 20 18 16 23 23 H 1.48505 * 109.46935 * 330.00024 * 20 18 16 24 24 H 1.08000 * 119.99727 * 180.02562 * 1 2 3 25 25 H 1.07997 * 119.99914 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.00216 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.47170 * 4.99329 * 3 2 1 28 28 H 1.09000 * 109.47086 * 244.99705 * 3 2 1 29 29 H 1.09000 * 114.16673 * 254.44562 * 6 4 3 30 30 H 1.08997 * 114.17088 * 26.95863 * 6 4 3 31 31 H 1.09005 * 113.47309 * 219.21166 * 7 6 4 32 32 H 1.08996 * 113.47832 * 88.74376 * 7 6 4 33 33 H 1.09004 * 109.47131 * 50.00278 * 9 8 4 34 34 H 1.08994 * 109.47471 * 290.00028 * 9 8 4 35 35 H 1.08994 * 109.46996 * 209.99677 * 13 12 10 36 36 H 1.09001 * 109.46578 * 329.99540 * 13 12 10 37 37 H 1.09004 * 109.46895 * 60.00075 * 14 13 12 38 38 H 1.08992 * 109.47180 * 180.02562 * 14 13 12 39 39 H 1.08997 * 109.47106 * 300.00561 * 14 13 12 40 40 H 1.09001 * 109.47567 * 210.00057 * 15 12 10 41 41 H 1.09005 * 109.47076 * 330.00563 * 15 12 10 42 42 H 0.97004 * 119.99796 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 1 3.8268 0.5892 1.0941 6 6 3.5516 2.7393 1.5171 7 6 3.3995 2.2615 2.9680 8 7 2.3635 1.3248 2.4946 9 6 2.4996 0.0157 3.1471 10 6 2.0229 0.1134 4.5734 11 8 1.6100 1.1694 5.0039 12 7 2.0498 -0.9743 5.3689 13 6 2.5481 -2.2501 4.8489 14 6 4.0548 -2.3480 5.0960 15 6 1.5808 -0.8808 6.7536 16 6 0.1068 -1.1897 6.8066 17 1 -0.4272 -1.4319 5.8996 18 6 -0.5602 -1.1632 8.0131 19 7 -1.8465 -1.4333 8.0594 20 14 0.3631 -0.7437 9.5818 21 1 0.3163 0.7234 9.8065 22 1 -0.2697 -1.4408 10.7302 23 1 1.7769 -1.1802 9.4558 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3586 2.1317 0.0894 28 1 2.6213 1.4025 -0.9314 29 1 4.5824 2.9205 1.2126 30 1 2.8719 3.5435 1.2353 31 1 3.0163 3.0293 3.6401 32 1 4.2885 1.7652 3.3572 33 1 3.5458 -0.2899 3.1338 34 1 1.8991 -0.7207 2.6130 35 1 2.0425 -3.0716 5.3563 36 1 2.3509 -2.3079 3.7784 37 1 4.2519 -2.2901 6.1665 38 1 4.4256 -3.2969 4.7087 39 1 4.5603 -1.5264 4.5886 40 1 2.1243 -1.5965 7.3705 41 1 1.7543 0.1278 7.1287 42 1 -2.3157 -1.4150 8.9082 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934469171.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:56 Heat of formation + Delta-G solvation = -0.631167 kcal Electronic energy + Delta-G solvation = -20983.210509 eV Core-core repulsion = 17964.198122 eV Total energy + Delta-G solvation = -3019.012387 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.61259 -40.09105 -36.96002 -35.43088 -34.89400 -32.48476 -31.62828 -29.68289 -29.26612 -26.37220 -24.40851 -24.30307 -23.65803 -20.71785 -20.54949 -19.86032 -19.12312 -18.01385 -17.50707 -16.78519 -16.58712 -16.26759 -15.80549 -15.60313 -14.95202 -14.73709 -14.58825 -14.48581 -14.08677 -13.97112 -13.66305 -13.33838 -13.19105 -13.00638 -12.59052 -12.53007 -12.41317 -12.17726 -12.12668 -12.02961 -11.99677 -11.76595 -11.75873 -11.34207 -10.85266 -10.62807 -10.05633 -9.71301 -9.40125 -8.35964 -6.41021 1.29496 1.34360 1.42603 1.49294 1.80649 2.23794 2.28934 2.98116 3.07923 3.49767 3.65930 3.86906 4.05469 4.11052 4.24544 4.30004 4.37552 4.39521 4.44270 4.47628 4.55033 4.59756 4.75488 4.77842 4.84657 4.90207 4.97516 4.98609 5.02769 5.08077 5.17414 5.30022 5.35459 5.44409 5.45740 5.64834 5.82720 5.96825 6.12143 6.24064 6.60165 6.72937 7.20043 7.46264 8.81376 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021365 B = 0.005132 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.264233 B = 5454.533876 C = 5638.506652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.074 4.074 4 C 0.036 3.964 5 H 0.101 0.899 6 C -0.124 4.124 7 C -0.002 4.002 8 N -0.479 5.479 9 C 0.021 3.979 10 C 0.498 3.502 11 O -0.581 6.581 12 N -0.604 5.604 13 C 0.098 3.902 14 C -0.158 4.158 15 C 0.228 3.772 16 C -0.536 4.536 17 H 0.025 0.975 18 C 0.010 3.990 19 N -0.946 5.946 20 Si 0.950 3.050 21 H -0.277 1.277 22 H -0.273 1.273 23 H -0.238 1.238 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.119 0.881 27 H 0.058 0.942 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.015 0.985 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.382 0.697 -16.132 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.167 4.167 3 C -0.111 4.111 4 C -0.073 4.073 5 H 0.119 0.881 6 C -0.161 4.161 7 C -0.131 4.131 8 N -0.202 5.202 9 C -0.111 4.111 10 C 0.287 3.713 11 O -0.460 6.460 12 N -0.336 5.336 13 C -0.024 4.024 14 C -0.216 4.216 15 C 0.105 3.895 16 C -0.574 4.574 17 H 0.043 0.957 18 C -0.188 4.188 19 N -0.586 5.586 20 Si 0.772 3.228 21 H -0.203 1.203 22 H -0.198 1.198 23 H -0.161 1.161 24 H 0.113 0.887 25 H 0.104 0.896 26 H 0.137 0.863 27 H 0.077 0.923 28 H 0.121 0.879 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.065 0.935 38 H 0.114 0.886 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.033 0.967 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 16.301 1.331 -15.706 22.675 hybrid contribution -0.104 -0.249 1.210 1.239 sum 16.197 1.082 -14.497 21.764 Atomic orbital electron populations 1.23878 0.96827 1.01502 1.02342 1.23004 0.95770 0.99111 0.98820 1.20702 0.97700 0.95112 0.97633 1.23533 0.95509 0.98345 0.89873 0.88082 1.23168 1.03068 0.96312 0.93569 1.23676 0.93856 0.97005 0.98561 1.68887 1.40945 1.06277 1.04123 1.22562 1.02186 0.95457 0.90855 1.21192 0.78157 0.83280 0.88717 1.90630 1.48159 1.30765 1.76462 1.48088 1.62126 1.10570 1.12783 1.21758 0.95732 0.84757 1.00182 1.22143 0.93936 1.03486 1.02056 1.19243 0.92995 0.96498 0.80725 1.21569 0.94459 1.47408 0.94007 0.95704 1.25880 0.95658 0.94211 1.03036 1.70060 1.10316 1.50701 1.27551 0.85691 0.80315 0.78625 0.78151 1.20316 1.19751 1.16089 0.88711 0.89586 0.86345 0.92295 0.87890 0.87644 0.89295 0.92551 0.90731 0.88583 0.87594 0.91070 0.89009 0.93464 0.88593 0.92075 0.93392 0.96726 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.96 14.32 67.78 0.97 -3.99 16 2 C -0.15 -3.01 8.74 25.65 0.22 -2.79 16 3 C -0.07 -1.32 5.72 29.85 0.17 -1.15 16 4 C 0.04 0.67 3.05 42.19 0.13 0.80 16 5 H 0.10 1.40 7.77 -2.39 -0.02 1.39 16 6 C -0.12 -2.17 8.01 30.94 0.25 -1.92 16 7 C 0.00 -0.05 6.71 83.58 0.56 0.51 16 8 N -0.48 -13.88 5.70 -906.75 -5.17 -19.05 16 9 C 0.02 0.60 3.76 85.56 0.32 0.92 16 10 C 0.50 21.06 7.51 87.66 0.66 21.71 16 11 O -0.58 -30.75 15.34 -3.04 -0.05 -30.80 16 12 N -0.60 -25.20 2.46 -826.15 -2.03 -27.23 16 13 C 0.10 2.91 5.94 86.38 0.51 3.42 16 14 C -0.16 -3.42 10.24 71.98 0.74 -2.69 16 15 C 0.23 11.50 4.23 85.63 0.36 11.86 16 16 C -0.54 -32.71 9.94 25.60 0.25 -32.46 16 17 H 0.02 1.70 8.06 -2.91 -0.02 1.68 16 18 C 0.01 0.61 5.47 84.66 0.46 1.07 16 19 N -0.95 -61.46 13.96 21.45 0.30 -61.16 16 20 Si 0.95 45.70 27.47 68.60 1.88 47.59 16 21 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 24 H 0.09 2.16 8.06 -2.91 -0.02 2.14 16 25 H 0.09 2.16 7.84 -2.91 -0.02 2.14 16 26 H 0.12 1.99 8.06 -2.91 -0.02 1.96 16 27 H 0.06 1.25 7.73 -2.39 -0.02 1.23 16 28 H 0.10 1.26 8.14 -2.39 -0.02 1.25 16 29 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 1.65 8.08 -2.39 -0.02 1.63 16 31 H 0.06 1.83 8.13 -2.38 -0.02 1.81 16 32 H 0.07 1.71 7.70 -2.39 -0.02 1.69 16 33 H 0.10 2.09 6.63 -2.38 -0.02 2.07 16 34 H 0.11 2.93 6.85 -2.39 -0.02 2.92 16 35 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 36 H 0.09 2.23 6.43 -2.39 -0.02 2.21 16 37 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.19 7.24 -2.39 -0.02 1.17 16 40 H 0.05 2.22 7.13 -2.39 -0.02 2.20 16 41 H 0.01 0.80 6.85 -2.38 -0.02 0.78 16 42 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 Total: -1.00 -81.24 340.82 1.46 -79.77 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.91 Total: 15.58 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 5.61 Total: -4.70 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -6.90 Total: -107.44 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.05 Total: -30.80 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.88 Total: 47.59 kcal Total: -81.24 1.46 -79.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934469171.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.141 kcal (2) G-P(sol) polarization free energy of solvation -81.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds