Wall clock time and date at job start Mon Mar 30 2020 00:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47370 * 2 1 4 4 C 1.34776 * 120.00485 * 270.00493 * 3 2 1 5 5 O 1.21283 * 120.00192 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.99890 * 359.97438 * 4 3 2 7 7 C 1.53781 * 113.61429 * 277.49980 * 6 4 3 8 8 C 1.53780 * 87.08011 * 220.01695 * 7 6 4 9 9 C 1.53005 * 113.61749 * 270.88791 * 8 7 6 10 10 C 1.53781 * 113.61544 * 180.02562 * 6 4 3 11 11 C 1.46508 * 119.99536 * 90.00247 * 3 2 1 12 12 C 1.53496 * 114.20706 * 60.00133 * 11 3 2 13 13 N 1.47062 * 87.98485 * 220.14769 * 12 11 3 14 14 C 1.36939 * 136.05593 * 207.08750 * 13 12 11 15 15 H 1.08008 * 119.99868 * 7.82597 * 14 13 12 16 16 C 1.38808 * 120.00203 * 187.82575 * 14 13 12 17 17 N 1.31620 * 120.00364 * 195.17616 * 16 14 13 18 18 Si 1.86801 * 119.99798 * 15.17271 * 16 14 13 19 19 H 1.48498 * 109.47212 * 270.00440 * 18 16 14 20 20 H 1.48495 * 109.47138 * 30.00316 * 18 16 14 21 21 H 1.48498 * 109.47078 * 150.00074 * 18 16 14 22 22 C 1.47059 * 87.88616 * 27.34176 * 13 12 11 23 23 H 1.09009 * 109.46820 * 299.99474 * 1 2 3 24 24 H 1.08996 * 109.47258 * 59.99260 * 1 2 3 25 25 H 1.08993 * 109.47413 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47057 * 240.00365 * 2 1 3 27 27 H 1.08996 * 109.47258 * 120.00740 * 2 1 3 28 28 H 1.09004 * 112.84480 * 48.80503 * 6 4 3 29 29 H 1.08992 * 113.61488 * 334.56383 * 7 6 4 30 30 H 1.09004 * 113.61470 * 105.47039 * 7 6 4 31 31 H 1.09001 * 113.69263 * 139.99323 * 8 7 6 32 32 H 1.08990 * 109.47243 * 157.49811 * 9 8 7 33 33 H 1.09005 * 109.46702 * 277.49607 * 9 8 7 34 34 H 1.09004 * 109.46877 * 37.48983 * 9 8 7 35 35 H 1.09004 * 113.61209 * 254.53209 * 10 6 4 36 36 H 1.08996 * 113.61319 * 25.43594 * 10 6 4 37 37 H 1.09001 * 113.27729 * 193.06987 * 11 3 2 38 38 H 1.09008 * 113.46447 * 105.36204 * 12 11 3 39 39 H 1.09003 * 113.46673 * 334.93103 * 12 11 3 40 40 H 0.97001 * 119.99282 * 354.91237 * 17 16 14 41 41 H 1.08997 * 113.47135 * 87.43718 * 22 13 12 42 42 H 1.09007 * 113.47198 * 217.88025 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0166 -1.1671 5 8 2.6469 3.1602 -1.1671 6 6 1.9922 1.3062 -2.4723 7 6 3.1540 0.4004 -2.9137 8 6 2.8967 0.9008 -4.3448 9 6 1.8775 0.0586 -5.1148 10 6 2.2968 2.1661 -3.7102 11 6 2.2626 2.0717 1.2689 12 6 3.3085 1.3926 2.1638 13 7 2.4509 1.7073 3.3163 14 6 2.6395 1.9286 4.6544 15 1 3.6402 2.0098 5.0526 16 6 1.5446 2.0484 5.4992 17 7 1.6966 2.5501 6.7065 18 14 -0.1447 1.4978 4.9225 19 1 -0.8392 2.6352 4.2675 20 1 0.0024 0.3829 3.9527 21 1 -0.9401 1.0374 6.0889 22 6 1.3008 1.6735 2.4004 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.0182 0.8181 -2.5081 29 1 4.1208 0.7036 -2.5123 30 1 2.9537 -0.6628 -2.7803 31 1 3.8075 1.0877 -4.9138 32 1 1.4485 0.6542 -5.9204 33 1 2.3727 -0.8171 -5.5344 34 1 1.0853 -0.2615 -4.4379 35 1 1.4043 2.5290 -4.2201 36 1 3.0295 2.9519 -3.5265 37 1 2.4025 3.1466 1.1543 38 1 4.2671 1.9113 2.1815 39 1 3.4106 0.3234 1.9778 40 1 2.5838 2.7674 7.0331 41 1 0.8735 0.6784 2.2767 42 1 0.5487 2.4314 2.6196 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949870891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:23 Heat of formation + Delta-G solvation = 43.404131 kcal Electronic energy + Delta-G solvation = -21221.315821 eV Core-core repulsion = 18204.212948 eV Total energy + Delta-G solvation = -3017.102873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.72249 -39.03076 -37.34912 -35.21306 -32.34656 -30.40507 -29.92425 -27.83846 -25.88210 -25.33663 -25.15425 -23.45789 -22.35416 -20.07587 -18.92011 -18.51722 -17.72728 -17.18322 -16.55074 -15.47877 -15.15293 -14.97544 -14.39265 -13.94197 -13.74357 -13.50529 -13.35617 -13.14819 -12.87410 -12.67944 -12.45446 -12.30520 -11.96910 -11.69196 -11.58178 -11.46027 -11.14884 -11.09672 -11.02874 -10.60851 -10.49379 -10.46062 -10.21035 -9.69885 -9.45029 -9.24075 -8.73267 -8.30269 -7.20961 -6.33488 -3.25628 2.74071 3.13530 3.38994 3.44491 3.59740 4.27874 4.36939 4.44664 4.55409 4.57088 4.75616 4.87307 4.98831 5.08016 5.16170 5.23450 5.32851 5.38876 5.42725 5.44659 5.49976 5.59596 5.65084 5.68133 5.78112 5.80167 5.83142 5.90613 5.95684 6.04028 6.10701 6.23699 6.27444 6.29876 6.39163 6.55548 7.01430 7.08009 7.63842 8.21946 8.37044 8.95005 9.47632 10.33196 11.16732 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037360 B = 0.004792 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.287021 B = 5841.315194 C = 6163.519765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.101 3.899 3 N -0.595 5.595 4 C 0.522 3.478 5 O -0.543 6.543 6 C -0.137 4.137 7 C -0.119 4.119 8 C -0.117 4.117 9 C -0.135 4.135 10 C -0.114 4.114 11 C 0.101 3.899 12 C 0.107 3.893 13 N -0.617 5.617 14 C -0.305 4.305 15 H 0.083 0.917 16 C -0.022 4.022 17 N -0.930 5.930 18 Si 1.062 2.938 19 H -0.293 1.293 20 H -0.282 1.282 21 H -0.294 1.294 22 C 0.091 3.909 23 H 0.067 0.933 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.048 0.952 39 H 0.037 0.963 40 H 0.262 0.738 41 H 0.053 0.947 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.277 -8.070 -23.027 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.022 4.022 3 N -0.327 5.327 4 C 0.310 3.690 5 O -0.421 6.421 6 C -0.158 4.158 7 C -0.156 4.156 8 C -0.135 4.135 9 C -0.192 4.192 10 C -0.152 4.152 11 C -0.003 4.003 12 C -0.020 4.020 13 N -0.345 5.345 14 C -0.431 4.431 15 H 0.101 0.899 16 C -0.221 4.221 17 N -0.572 5.572 18 Si 0.893 3.107 19 H -0.220 1.220 20 H -0.209 1.209 21 H -0.222 1.222 22 C -0.035 4.035 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.129 0.871 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.141 0.859 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.601 -7.484 -22.279 23.646 hybrid contribution 1.538 -0.170 -0.197 1.560 sum -1.064 -7.654 -22.476 23.768 Atomic orbital electron populations 1.22352 0.95932 1.02313 1.02945 1.21578 0.94528 0.82784 1.03317 1.48046 1.64784 1.13987 1.05922 1.20524 0.76972 0.86413 0.85085 1.90668 1.46057 1.17976 1.87362 1.22809 1.01024 0.99289 0.92668 1.22918 0.97857 0.98942 0.95930 1.22312 0.99308 0.96561 0.95321 1.21611 0.98389 0.99366 0.99859 1.22885 1.01679 0.96567 0.94047 1.23508 0.98458 0.98326 0.80032 1.22776 0.95366 0.97062 0.86805 1.45891 1.02893 1.81904 1.03823 1.20112 0.95563 1.47713 0.79714 0.89896 1.25783 1.02838 0.98799 0.94729 1.70897 1.24850 1.42721 1.18683 0.83782 0.75660 0.76613 0.74633 1.22033 1.20867 1.22155 1.23206 0.92997 0.99186 0.88117 0.91371 0.92585 0.91520 0.90375 0.89749 0.87121 0.89602 0.90699 0.90298 0.92284 0.92421 0.92430 0.91160 0.88717 0.85931 0.93368 0.94600 0.92753 0.92925 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 9.85 37.16 0.37 -1.57 16 2 C 0.10 1.20 4.97 -4.04 -0.02 1.18 16 3 N -0.60 -9.00 2.72 -165.73 -0.45 -9.45 16 4 C 0.52 7.86 7.20 -10.99 -0.08 7.79 16 5 O -0.54 -10.30 15.41 5.55 0.09 -10.21 16 6 C -0.14 -1.45 2.44 -90.96 -0.22 -1.67 16 7 C -0.12 -1.05 6.48 -25.92 -0.17 -1.22 16 8 C -0.12 -0.93 4.55 -89.83 -0.41 -1.34 16 9 C -0.14 -0.87 9.59 37.16 0.36 -0.51 16 10 C -0.11 -1.15 6.99 -25.94 -0.18 -1.33 16 11 C 0.10 1.91 4.57 -67.68 -0.31 1.60 16 12 C 0.11 2.20 8.24 -8.52 -0.07 2.13 16 13 N -0.62 -15.42 3.62 -184.65 -0.67 -16.09 16 14 C -0.30 -8.89 11.03 -15.06 -0.17 -9.05 16 15 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 16 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 17 N -0.93 -29.53 13.70 55.49 0.76 -28.77 16 18 Si 1.06 26.59 25.50 -169.99 -4.34 22.26 16 19 H -0.29 -7.10 6.97 56.52 0.39 -6.71 16 20 H -0.28 -6.43 5.66 56.52 0.32 -6.11 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 C 0.09 1.94 4.32 -8.39 -0.04 1.90 16 23 H 0.07 0.90 6.10 -51.92 -0.32 0.59 16 24 H 0.06 0.55 7.24 -51.93 -0.38 0.18 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.08 0.72 5.79 -51.93 -0.30 0.41 16 27 H 0.08 1.09 6.17 -51.93 -0.32 0.77 16 28 H 0.11 1.00 6.40 -51.93 -0.33 0.66 16 29 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 30 H 0.07 0.55 7.64 -51.93 -0.40 0.15 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.36 7.34 -51.93 -0.38 -0.02 16 35 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 36 H 0.09 1.13 7.43 -51.93 -0.39 0.75 16 37 H 0.12 2.55 7.29 -51.93 -0.38 2.17 16 38 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 39 H 0.04 0.68 6.96 -51.93 -0.36 0.32 16 40 H 0.26 8.22 8.73 -40.82 -0.36 7.87 16 41 H 0.05 1.05 4.08 -51.93 -0.21 0.84 16 42 H 0.05 1.20 6.22 -51.93 -0.32 0.88 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -33.51 318.77 -7.54 -41.05 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -6.70 Total: -0.74 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.03 Total: -2.85 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.36 Total: -54.31 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 26.59 SS G_CDS: -4.34 Total: 22.26 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.51 -7.54 -41.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949870891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.455 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds