Wall clock time and date at job start Mon Mar 30 2020 00:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47370 * 2 1 4 4 C 1.34776 * 120.00485 * 270.00493 * 3 2 1 5 5 O 1.21283 * 120.00192 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.99890 * 359.97438 * 4 3 2 7 7 C 1.53781 * 113.61429 * 277.49980 * 6 4 3 8 8 C 1.53780 * 87.08011 * 220.01695 * 7 6 4 9 9 C 1.53005 * 113.61749 * 270.88791 * 8 7 6 10 10 C 1.53781 * 113.61544 * 180.02562 * 6 4 3 11 11 C 1.46508 * 119.99536 * 90.00247 * 3 2 1 12 12 C 1.53496 * 114.20706 * 60.00133 * 11 3 2 13 13 N 1.47062 * 87.98485 * 220.14769 * 12 11 3 14 14 C 1.36939 * 136.05593 * 207.08750 * 13 12 11 15 15 H 1.08008 * 119.99868 * 7.82597 * 14 13 12 16 16 C 1.38808 * 120.00203 * 187.82575 * 14 13 12 17 17 N 1.31620 * 120.00364 * 195.17616 * 16 14 13 18 18 Si 1.86801 * 119.99798 * 15.17271 * 16 14 13 19 19 H 1.48498 * 109.47212 * 270.00440 * 18 16 14 20 20 H 1.48495 * 109.47138 * 30.00316 * 18 16 14 21 21 H 1.48498 * 109.47078 * 150.00074 * 18 16 14 22 22 C 1.47059 * 87.88616 * 27.34176 * 13 12 11 23 23 H 1.09009 * 109.46820 * 299.99474 * 1 2 3 24 24 H 1.08996 * 109.47258 * 59.99260 * 1 2 3 25 25 H 1.08993 * 109.47413 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47057 * 240.00365 * 2 1 3 27 27 H 1.08996 * 109.47258 * 120.00740 * 2 1 3 28 28 H 1.09004 * 112.84480 * 48.80503 * 6 4 3 29 29 H 1.08992 * 113.61488 * 334.56383 * 7 6 4 30 30 H 1.09004 * 113.61470 * 105.47039 * 7 6 4 31 31 H 1.09001 * 113.69263 * 139.99323 * 8 7 6 32 32 H 1.08990 * 109.47243 * 157.49811 * 9 8 7 33 33 H 1.09005 * 109.46702 * 277.49607 * 9 8 7 34 34 H 1.09004 * 109.46877 * 37.48983 * 9 8 7 35 35 H 1.09004 * 113.61209 * 254.53209 * 10 6 4 36 36 H 1.08996 * 113.61319 * 25.43594 * 10 6 4 37 37 H 1.09001 * 113.27729 * 193.06987 * 11 3 2 38 38 H 1.09008 * 113.46447 * 105.36204 * 12 11 3 39 39 H 1.09003 * 113.46673 * 334.93103 * 12 11 3 40 40 H 0.97001 * 119.99282 * 354.91237 * 17 16 14 41 41 H 1.08997 * 113.47135 * 87.43718 * 22 13 12 42 42 H 1.09007 * 113.47198 * 217.88025 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0166 -1.1671 5 8 2.6469 3.1602 -1.1671 6 6 1.9922 1.3062 -2.4723 7 6 3.1540 0.4004 -2.9137 8 6 2.8967 0.9008 -4.3448 9 6 1.8775 0.0586 -5.1148 10 6 2.2968 2.1661 -3.7102 11 6 2.2626 2.0717 1.2689 12 6 3.3085 1.3926 2.1638 13 7 2.4509 1.7073 3.3163 14 6 2.6395 1.9286 4.6544 15 1 3.6402 2.0098 5.0526 16 6 1.5446 2.0484 5.4992 17 7 1.6966 2.5501 6.7065 18 14 -0.1447 1.4978 4.9225 19 1 -0.8392 2.6352 4.2675 20 1 0.0024 0.3829 3.9527 21 1 -0.9401 1.0374 6.0889 22 6 1.3008 1.6735 2.4004 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 1.0182 0.8181 -2.5081 29 1 4.1208 0.7036 -2.5123 30 1 2.9537 -0.6628 -2.7803 31 1 3.8075 1.0877 -4.9138 32 1 1.4485 0.6542 -5.9204 33 1 2.3727 -0.8171 -5.5344 34 1 1.0853 -0.2615 -4.4379 35 1 1.4043 2.5290 -4.2201 36 1 3.0295 2.9519 -3.5265 37 1 2.4025 3.1466 1.1543 38 1 4.2671 1.9113 2.1815 39 1 3.4106 0.3234 1.9778 40 1 2.5838 2.7674 7.0331 41 1 0.8735 0.6784 2.2767 42 1 0.5487 2.4314 2.6196 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949870891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:22 Heat of formation + Delta-G solvation = 21.018595 kcal Electronic energy + Delta-G solvation = -21222.286531 eV Core-core repulsion = 18204.212948 eV Total energy + Delta-G solvation = -3018.073583 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86176 -40.34780 -38.55025 -36.52659 -34.50878 -31.52652 -30.70611 -29.55063 -27.06136 -26.61033 -26.19826 -24.61179 -23.80787 -21.63459 -20.15217 -19.65630 -19.34791 -18.50128 -17.79101 -16.96708 -16.55812 -16.06290 -15.76008 -15.34427 -15.28352 -14.61681 -14.41071 -14.15733 -14.01763 -13.72197 -13.56077 -13.29236 -13.27233 -13.16342 -13.10611 -12.68857 -12.36560 -12.13105 -12.00769 -11.95104 -11.81708 -11.56306 -11.30071 -11.19448 -11.14071 -10.92301 -10.58601 -9.63816 -9.30330 -8.68343 -5.53231 1.36771 1.47899 1.57671 1.64212 1.91079 2.51487 3.00589 3.11568 3.45290 3.55181 3.62051 3.69687 3.82673 3.97033 4.07683 4.13821 4.31999 4.40304 4.48242 4.51045 4.57121 4.60360 4.67328 4.71451 4.78356 4.85365 4.86975 4.95981 5.01848 5.09763 5.11580 5.13899 5.18120 5.29532 5.40517 5.43118 5.58380 5.65553 5.89700 6.46253 6.63844 7.18332 7.26608 8.19779 8.83540 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.037360 B = 0.004792 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.287021 B = 5841.315194 C = 6163.519765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.094 3.906 3 N -0.593 5.593 4 C 0.517 3.483 5 O -0.591 6.591 6 C -0.130 4.130 7 C -0.115 4.115 8 C -0.104 4.104 9 C -0.133 4.133 10 C -0.122 4.122 11 C 0.121 3.879 12 C 0.111 3.889 13 N -0.650 5.650 14 C -0.296 4.296 15 H 0.049 0.951 16 C -0.080 4.080 17 N -0.965 5.965 18 Si 1.100 2.900 19 H -0.283 1.283 20 H -0.244 1.244 21 H -0.298 1.298 22 C 0.095 3.905 23 H 0.042 0.958 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.139 0.861 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.038 0.962 39 H 0.065 0.935 40 H 0.247 0.753 41 H 0.080 0.920 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.907 -10.907 -26.417 28.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.028 4.028 3 N -0.324 5.324 4 C 0.307 3.693 5 O -0.471 6.471 6 C -0.151 4.151 7 C -0.153 4.153 8 C -0.122 4.122 9 C -0.190 4.190 10 C -0.160 4.160 11 C 0.015 3.985 12 C -0.016 4.016 13 N -0.378 5.378 14 C -0.423 4.423 15 H 0.067 0.933 16 C -0.273 4.273 17 N -0.610 5.610 18 Si 0.924 3.076 19 H -0.210 1.210 20 H -0.168 1.168 21 H -0.225 1.225 22 C -0.031 4.031 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.113 0.887 26 H 0.132 0.868 27 H 0.096 0.904 28 H 0.157 0.843 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.115 0.885 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.211 -10.362 -25.738 28.064 hybrid contribution 2.177 0.759 0.772 2.431 sum -2.034 -9.604 -24.966 26.827 Atomic orbital electron populations 1.22353 0.94799 1.03963 1.02325 1.21909 0.95459 0.80592 1.04801 1.48081 1.64754 1.15243 1.04343 1.21412 0.75599 0.85971 0.86268 1.90655 1.48082 1.20355 1.88053 1.22955 1.03052 0.99563 0.89535 1.22935 0.96237 0.99985 0.96102 1.22276 0.99755 0.95172 0.95044 1.21623 0.98077 0.99419 0.99906 1.22903 1.01614 0.96971 0.94542 1.22790 0.96711 0.97257 0.81706 1.22927 0.94901 0.98578 0.85187 1.45869 1.05957 1.82811 1.03209 1.19943 0.94156 1.46181 0.82057 0.93276 1.27168 1.06846 0.98869 0.94397 1.71015 1.23949 1.45592 1.20400 0.83368 0.71382 0.77764 0.75081 1.20961 1.16799 1.22545 1.23365 0.92081 1.00088 0.87536 0.93857 0.91378 0.88721 0.86810 0.90379 0.84341 0.91220 0.88041 0.90108 0.91948 0.91309 0.91594 0.90295 0.91479 0.88458 0.94354 0.91717 0.94356 0.90255 0.93974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.01 9.85 71.98 0.71 -2.30 16 2 C 0.09 1.81 4.97 86.38 0.43 2.24 16 3 N -0.59 -16.51 2.72 -796.65 -2.16 -18.68 16 4 C 0.52 14.70 7.20 87.66 0.63 15.33 16 5 O -0.59 -22.54 15.41 -3.04 -0.05 -22.59 16 6 C -0.13 -2.33 2.44 -11.01 -0.03 -2.36 16 7 C -0.11 -1.61 6.48 31.12 0.20 -1.41 16 8 C -0.10 -1.31 4.55 -10.28 -0.05 -1.36 16 9 C -0.13 -1.11 9.59 71.98 0.69 -0.42 16 10 C -0.12 -2.22 6.99 31.11 0.22 -2.00 16 11 C 0.12 4.48 4.57 45.55 0.21 4.69 16 12 C 0.11 4.44 8.24 83.17 0.69 5.12 16 13 N -0.65 -32.36 3.62 -738.11 -2.67 -35.03 16 14 C -0.30 -17.71 11.03 84.03 0.93 -16.78 16 15 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 16 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 17 N -0.96 -63.42 13.70 21.65 0.30 -63.12 16 18 Si 1.10 53.10 25.50 68.60 1.75 54.85 16 19 H -0.28 -13.10 6.97 99.48 0.69 -12.41 16 20 H -0.24 -10.09 5.66 99.48 0.56 -9.52 16 21 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 22 C 0.09 3.86 4.32 83.26 0.36 4.22 16 23 H 0.04 0.97 6.10 -2.38 -0.01 0.95 16 24 H 0.07 1.00 7.24 -2.39 -0.02 0.99 16 25 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 26 H 0.11 1.42 5.79 -2.39 -0.01 1.41 16 27 H 0.08 1.65 6.17 -2.39 -0.01 1.64 16 28 H 0.14 1.76 6.40 -2.39 -0.02 1.74 16 29 H 0.07 1.23 8.09 -2.39 -0.02 1.22 16 30 H 0.10 0.92 7.64 -2.38 -0.02 0.90 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 34 H 0.07 0.46 7.34 -2.39 -0.02 0.44 16 35 H 0.08 1.27 8.10 -2.39 -0.02 1.25 16 36 H 0.07 1.60 7.43 -2.39 -0.02 1.58 16 37 H 0.10 4.13 7.29 -2.39 -0.02 4.11 16 38 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.07 2.28 6.96 -2.39 -0.02 2.26 16 40 H 0.25 16.34 8.73 -92.71 -0.81 15.53 16 41 H 0.08 2.87 4.08 -2.39 -0.01 2.86 16 42 H 0.04 1.83 6.22 -2.38 -0.01 1.81 16 Total: -1.00 -76.71 318.77 3.42 -73.29 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 0.81 Total: 10.75 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 5.45 Total: 0.54 kcal Atomic # 7 Polarization: -112.29 SS G_CDS: -4.54 Total: -116.83 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.05 Total: -22.59 kcal Atomic # 14 Polarization: 53.10 SS G_CDS: 1.75 Total: 54.85 kcal Total: -76.71 3.42 -73.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949870891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.306 kcal (2) G-P(sol) polarization free energy of solvation -76.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds