Wall clock time and date at job start Mon Mar 30 2020 00:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47191 * 2 1 4 4 C 1.34782 * 119.99798 * 90.00249 * 3 2 1 5 5 O 1.21287 * 119.99836 * 180.02562 * 4 3 2 6 6 C 1.50694 * 120.00258 * 359.97438 * 4 3 2 7 7 H 1.09000 * 115.54915 * 34.32541 * 6 4 3 8 8 C 1.53073 * 117.51440 * 248.61155 * 6 4 3 9 9 C 1.53002 * 59.98504 * 252.51944 * 8 6 4 10 10 C 1.52997 * 117.49807 * 252.49772 * 9 8 6 11 11 C 1.52997 * 117.49626 * 107.49870 * 9 8 6 12 12 C 1.46499 * 120.00059 * 270.00128 * 3 2 1 13 13 C 1.53946 * 113.74326 * 36.67564 * 12 3 2 14 14 N 1.47582 * 86.11357 * 222.04904 * 13 12 3 15 15 C 1.36938 * 134.48873 * 204.64088 * 14 13 12 16 16 H 1.07995 * 120.00291 * 179.97438 * 15 14 13 17 17 C 1.38812 * 119.99773 * 359.97438 * 15 14 13 18 18 N 1.31616 * 120.00418 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99823 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47253 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47188 * 120.00213 * 19 17 15 22 22 H 1.48505 * 109.46896 * 239.99876 * 19 17 15 23 23 C 1.47577 * 91.01890 * 24.63590 * 14 13 12 24 24 H 1.09007 * 109.47296 * 299.99999 * 1 2 3 25 25 H 1.09001 * 109.47240 * 59.99552 * 1 2 3 26 26 H 1.08998 * 109.47201 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47528 * 240.00088 * 2 1 3 28 28 H 1.09005 * 109.47238 * 119.99931 * 2 1 3 29 29 H 1.09003 * 117.51703 * 145.04322 * 8 6 4 30 30 H 1.09002 * 117.49418 * 0.02562 * 8 6 4 31 31 H 1.09002 * 109.47153 * 248.74407 * 10 9 8 32 32 H 1.09001 * 109.46832 * 128.74598 * 10 9 8 33 33 H 1.09004 * 109.47261 * 8.74579 * 10 9 8 34 34 H 1.09007 * 109.46996 * 231.25228 * 11 9 8 35 35 H 1.08995 * 109.47579 * 351.25403 * 11 9 8 36 36 H 1.08997 * 109.47014 * 111.25786 * 11 9 8 37 37 H 1.09002 * 112.94167 * 168.40754 * 12 3 2 38 38 H 1.08994 * 113.76351 * 336.34634 * 13 12 3 39 39 H 1.08995 * 113.76867 * 107.74542 * 13 12 3 40 40 H 0.97006 * 120.00215 * 179.97438 * 18 17 15 41 41 H 1.08997 * 113.77556 * 221.05652 * 23 14 13 42 42 H 1.09008 * 113.76424 * 89.66116 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0165 1.1673 5 8 2.6468 3.1602 1.1673 6 6 1.9913 1.3063 2.4723 7 1 2.2009 0.2367 2.4735 8 6 0.8246 1.7991 3.3321 9 6 2.2654 2.0813 3.7628 10 6 2.8128 1.2956 4.9560 11 6 2.7739 3.5181 3.6293 12 6 2.2624 2.0718 -1.2687 13 6 1.2459 1.7218 -2.3706 14 7 2.4043 1.6724 -3.2837 15 6 2.5695 1.8320 -4.6337 16 1 3.5528 1.7444 -5.0715 17 6 1.4730 2.1065 -5.4394 18 7 0.2746 2.2138 -4.9059 19 14 1.6983 2.3236 -7.2811 20 1 3.1325 2.1560 -7.6275 21 1 0.8922 1.3057 -8.0018 22 1 1.2491 3.6823 -7.6780 23 6 3.3130 1.3820 -2.1578 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.2667 1.0537 3.8989 30 1 0.2390 2.6368 2.9532 31 1 2.9575 1.9704 5.7998 32 1 3.7664 0.8421 4.6857 33 1 2.1044 0.5146 5.2326 34 1 3.7197 3.5200 3.0873 35 1 2.0417 4.1137 3.0843 36 1 2.9230 3.9444 4.6214 37 1 2.4269 3.1422 -1.1450 38 1 0.7578 0.7578 -2.2277 39 1 0.5450 2.5262 -2.5932 40 1 -0.4916 2.4060 -5.4690 41 1 4.2623 1.9150 -2.2104 42 1 3.4319 0.3181 -1.9524 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949909459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:33 Heat of formation + Delta-G solvation = 47.224007 kcal Electronic energy + Delta-G solvation = -21113.063216 eV Core-core repulsion = 18096.125985 eV Total energy + Delta-G solvation = -3016.937231 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.30802 -38.40326 -36.60637 -34.94781 -32.07021 -30.13849 -29.52435 -27.55032 -27.43477 -24.84247 -24.56598 -23.27348 -22.37536 -20.04036 -18.82635 -18.14712 -17.31091 -16.69685 -15.93622 -14.90079 -14.87343 -14.35382 -14.10040 -13.87821 -13.67130 -13.49330 -13.09424 -12.73808 -12.51939 -12.46160 -12.12677 -11.98875 -11.84398 -11.54545 -11.50637 -11.23994 -11.16091 -10.88821 -10.77311 -10.63244 -10.25063 -10.16114 -10.02352 -9.76651 -9.53657 -9.12265 -8.80823 -8.09481 -6.90351 -5.79249 -3.11731 2.76320 3.27009 3.39027 3.44311 3.46511 3.79352 4.44698 4.55116 4.62320 4.76222 5.00251 5.05089 5.19710 5.24995 5.38282 5.48000 5.48832 5.56595 5.61121 5.65408 5.71256 5.83801 5.90130 5.92191 5.98949 6.02947 6.05991 6.11755 6.19132 6.24254 6.42022 6.49802 6.56881 6.63775 6.89258 7.20171 7.38319 7.52649 7.85874 7.95483 8.56882 9.02418 9.68228 10.55876 11.38016 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039308 B = 0.004326 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.152966 B = 6471.535448 C = 6722.827741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.106 3.894 3 N -0.592 5.592 4 C 0.540 3.460 5 O -0.542 6.542 6 C -0.184 4.184 7 H 0.120 0.880 8 C -0.147 4.147 9 C -0.099 4.099 10 C -0.115 4.115 11 C -0.102 4.102 12 C 0.091 3.909 13 C 0.154 3.846 14 N -0.607 5.607 15 C -0.222 4.222 16 H 0.082 0.918 17 C -0.007 4.007 18 N -0.920 5.920 19 Si 0.913 3.087 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.108 3.892 24 H 0.054 0.946 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.114 0.886 38 H 0.038 0.962 39 H 0.075 0.925 40 H 0.254 0.746 41 H 0.046 0.954 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.143 -4.905 17.993 18.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.017 4.017 3 N -0.324 5.324 4 C 0.328 3.672 5 O -0.420 6.420 6 C -0.205 4.205 7 H 0.138 0.862 8 C -0.184 4.184 9 C -0.100 4.100 10 C -0.172 4.172 11 C -0.159 4.159 12 C -0.012 4.012 13 C 0.028 3.972 14 N -0.333 5.333 15 C -0.350 4.350 16 H 0.100 0.900 17 C -0.203 4.203 18 N -0.567 5.567 19 Si 0.744 3.256 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.216 1.216 23 C -0.020 4.020 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.131 0.869 38 H 0.056 0.944 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.266 -4.234 17.618 18.163 hybrid contribution -0.066 -0.296 -1.210 1.248 sum 1.200 -4.530 16.408 17.064 Atomic orbital electron populations 1.22347 0.95751 1.01994 1.03257 1.21510 0.94751 0.82793 1.02649 1.48128 1.64268 1.13999 1.05982 1.19640 0.77191 0.86068 0.84306 1.90669 1.46379 1.17840 1.87109 1.22438 1.07053 1.00112 0.90904 0.86216 1.23186 0.90678 1.03146 1.01400 1.21575 0.97755 0.97148 0.93482 1.21380 1.00794 0.99213 0.95793 1.21336 1.02631 0.91951 0.99935 1.23983 0.99353 0.97840 0.80046 1.22759 0.91400 0.99416 0.83586 1.45674 1.03555 1.81998 1.02076 1.19046 0.94063 1.41621 0.80221 0.90039 1.24792 0.95221 1.02104 0.98223 1.69825 0.98153 1.54700 1.34055 0.86024 0.77362 0.77433 0.84811 1.20422 1.21720 1.21637 1.22976 0.94736 0.96902 0.87342 0.92713 0.90741 0.92042 0.89957 0.91040 0.88167 0.88345 0.91831 0.92111 0.92448 0.91403 0.91620 0.93664 0.86861 0.94422 0.90719 0.93640 0.93600 0.94806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 9.91 37.15 0.37 -1.89 16 2 C 0.11 1.43 5.10 -4.05 -0.02 1.41 16 3 N -0.59 -9.79 2.69 -167.92 -0.45 -10.25 16 4 C 0.54 8.79 7.44 -10.99 -0.08 8.71 16 5 O -0.54 -10.48 12.59 5.55 0.07 -10.41 16 6 C -0.18 -2.23 5.01 -91.74 -0.46 -2.69 16 7 H 0.12 1.23 6.44 -51.93 -0.33 0.90 16 8 C -0.15 -1.55 9.53 -26.69 -0.25 -1.81 16 9 C -0.10 -1.10 2.70 -154.51 -0.42 -1.52 16 10 C -0.11 -0.97 9.85 37.16 0.37 -0.60 16 11 C -0.10 -1.29 8.09 37.16 0.30 -0.99 16 12 C 0.09 1.86 4.40 -70.15 -0.31 1.55 16 13 C 0.15 3.62 6.33 -2.97 -0.02 3.60 16 14 N -0.61 -15.74 3.70 -178.12 -0.66 -16.40 16 15 C -0.22 -6.28 10.70 -15.06 -0.16 -6.44 16 16 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 17 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 18 N -0.92 -27.24 11.38 55.49 0.63 -26.61 16 19 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 C 0.11 2.29 8.46 -2.98 -0.03 2.26 16 24 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 25 H 0.07 1.17 5.85 -51.93 -0.30 0.87 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.08 1.21 6.36 -51.93 -0.33 0.88 16 28 H 0.07 0.77 6.00 -51.93 -0.31 0.45 16 29 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 30 H 0.10 1.16 8.05 -51.93 -0.42 0.74 16 31 H 0.06 0.48 7.93 -51.93 -0.41 0.07 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 34 H 0.07 0.98 7.27 -51.92 -0.38 0.60 16 35 H 0.06 0.95 7.01 -51.93 -0.36 0.58 16 36 H 0.04 0.48 7.93 -51.93 -0.41 0.06 16 37 H 0.11 2.52 7.24 -51.93 -0.38 2.15 16 38 H 0.04 0.86 5.01 -51.93 -0.26 0.60 16 39 H 0.07 1.98 7.15 -51.93 -0.37 1.61 16 40 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.03 0.68 6.97 -51.92 -0.36 0.32 16 LS Contribution 328.11 15.07 4.94 4.94 Total: -1.00 -31.66 328.11 -7.99 -39.65 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.70 Total: 0.58 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -0.81 Total: 1.30 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: -0.48 Total: -53.26 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.07 Total: -10.41 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.66 -7.99 -39.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949909459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.879 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds