Wall clock time and date at job start Mon Mar 30 2020 00:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47191 * 2 1 4 4 C 1.34782 * 119.99798 * 90.00249 * 3 2 1 5 5 O 1.21287 * 119.99836 * 180.02562 * 4 3 2 6 6 C 1.50694 * 120.00258 * 359.97438 * 4 3 2 7 7 H 1.09000 * 115.54915 * 34.32541 * 6 4 3 8 8 C 1.53073 * 117.51440 * 248.61155 * 6 4 3 9 9 C 1.53002 * 59.98504 * 252.51944 * 8 6 4 10 10 C 1.52997 * 117.49807 * 252.49772 * 9 8 6 11 11 C 1.52997 * 117.49626 * 107.49870 * 9 8 6 12 12 C 1.46499 * 120.00059 * 270.00128 * 3 2 1 13 13 C 1.53946 * 113.74326 * 36.67564 * 12 3 2 14 14 N 1.47582 * 86.11357 * 222.04904 * 13 12 3 15 15 C 1.36938 * 134.48873 * 204.64088 * 14 13 12 16 16 H 1.07995 * 120.00291 * 179.97438 * 15 14 13 17 17 C 1.38812 * 119.99773 * 359.97438 * 15 14 13 18 18 N 1.31616 * 120.00418 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99823 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47253 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47188 * 120.00213 * 19 17 15 22 22 H 1.48505 * 109.46896 * 239.99876 * 19 17 15 23 23 C 1.47577 * 91.01890 * 24.63590 * 14 13 12 24 24 H 1.09007 * 109.47296 * 299.99999 * 1 2 3 25 25 H 1.09001 * 109.47240 * 59.99552 * 1 2 3 26 26 H 1.08998 * 109.47201 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47528 * 240.00088 * 2 1 3 28 28 H 1.09005 * 109.47238 * 119.99931 * 2 1 3 29 29 H 1.09003 * 117.51703 * 145.04322 * 8 6 4 30 30 H 1.09002 * 117.49418 * 0.02562 * 8 6 4 31 31 H 1.09002 * 109.47153 * 248.74407 * 10 9 8 32 32 H 1.09001 * 109.46832 * 128.74598 * 10 9 8 33 33 H 1.09004 * 109.47261 * 8.74579 * 10 9 8 34 34 H 1.09007 * 109.46996 * 231.25228 * 11 9 8 35 35 H 1.08995 * 109.47579 * 351.25403 * 11 9 8 36 36 H 1.08997 * 109.47014 * 111.25786 * 11 9 8 37 37 H 1.09002 * 112.94167 * 168.40754 * 12 3 2 38 38 H 1.08994 * 113.76351 * 336.34634 * 13 12 3 39 39 H 1.08995 * 113.76867 * 107.74542 * 13 12 3 40 40 H 0.97006 * 120.00215 * 179.97438 * 18 17 15 41 41 H 1.08997 * 113.77556 * 221.05652 * 23 14 13 42 42 H 1.09008 * 113.76424 * 89.66116 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2430 2.0165 1.1673 5 8 2.6468 3.1602 1.1673 6 6 1.9913 1.3063 2.4723 7 1 2.2009 0.2367 2.4735 8 6 0.8246 1.7991 3.3321 9 6 2.2654 2.0813 3.7628 10 6 2.8128 1.2956 4.9560 11 6 2.7739 3.5181 3.6293 12 6 2.2624 2.0718 -1.2687 13 6 1.2459 1.7218 -2.3706 14 7 2.4043 1.6724 -3.2837 15 6 2.5695 1.8320 -4.6337 16 1 3.5528 1.7444 -5.0715 17 6 1.4730 2.1065 -5.4394 18 7 0.2746 2.2138 -4.9059 19 14 1.6983 2.3236 -7.2811 20 1 3.1325 2.1560 -7.6275 21 1 0.8922 1.3057 -8.0018 22 1 1.2491 3.6823 -7.6780 23 6 3.3130 1.3820 -2.1578 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.2667 1.0537 3.8989 30 1 0.2390 2.6368 2.9532 31 1 2.9575 1.9704 5.7998 32 1 3.7664 0.8421 4.6857 33 1 2.1044 0.5146 5.2326 34 1 3.7197 3.5200 3.0873 35 1 2.0417 4.1137 3.0843 36 1 2.9230 3.9444 4.6214 37 1 2.4269 3.1422 -1.1450 38 1 0.7578 0.7578 -2.2277 39 1 0.5450 2.5262 -2.5932 40 1 -0.4916 2.4060 -5.4690 41 1 4.2623 1.9150 -2.2104 42 1 3.4319 0.3181 -1.9524 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949909459.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:32 Heat of formation + Delta-G solvation = 28.275837 kcal Electronic energy + Delta-G solvation = -21113.884870 eV Core-core repulsion = 18096.125985 eV Total energy + Delta-G solvation = -3017.758885 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.59393 -39.87163 -37.85348 -36.38585 -34.11965 -31.38463 -30.51692 -29.37589 -28.28208 -26.66720 -26.02496 -24.52786 -23.85627 -21.36901 -20.16326 -19.36220 -18.93698 -18.29926 -17.38552 -16.84343 -16.17179 -15.71655 -15.49258 -15.17550 -14.83361 -14.55685 -14.33389 -14.11222 -13.85157 -13.60374 -13.45635 -13.30967 -13.22448 -12.89120 -12.88238 -12.68721 -12.57804 -12.39791 -12.09584 -12.06678 -11.94506 -11.85935 -11.51932 -11.08408 -10.89996 -10.71609 -10.35833 -9.54083 -8.97449 -7.94723 -5.29177 1.44330 1.46004 1.55134 1.56369 1.96939 2.46846 2.84796 3.24428 3.38106 3.53961 3.73252 3.81467 3.89977 4.03921 4.20166 4.24572 4.28332 4.44129 4.46242 4.55595 4.70611 4.77556 4.82774 4.87183 4.88734 4.92742 4.98773 5.04590 5.11938 5.14733 5.16737 5.17379 5.28546 5.37138 5.43797 5.48352 5.58931 5.74648 5.87794 6.55262 6.87309 7.26908 7.55124 8.49167 9.22422 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.039308 B = 0.004326 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.152966 B = 6471.535448 C = 6722.827741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.103 3.897 3 N -0.593 5.593 4 C 0.532 3.468 5 O -0.581 6.581 6 C -0.189 4.189 7 H 0.150 0.850 8 C -0.133 4.133 9 C -0.101 4.101 10 C -0.109 4.109 11 C -0.100 4.100 12 C 0.115 3.885 13 C 0.162 3.838 14 N -0.637 5.637 15 C -0.237 4.237 16 H 0.085 0.915 17 C -0.064 4.064 18 N -0.952 5.952 19 Si 0.982 3.018 20 H -0.265 1.265 21 H -0.288 1.288 22 H -0.293 1.293 23 C 0.115 3.885 24 H 0.064 0.936 25 H 0.037 0.963 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.113 0.887 29 H 0.135 0.865 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.038 0.962 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.034 0.966 40 H 0.250 0.750 41 H 0.047 0.953 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.499 -7.066 19.933 21.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.324 5.324 4 C 0.323 3.677 5 O -0.462 6.462 6 C -0.210 4.210 7 H 0.168 0.832 8 C -0.171 4.171 9 C -0.102 4.102 10 C -0.166 4.166 11 C -0.157 4.157 12 C 0.010 3.990 13 C 0.036 3.964 14 N -0.364 5.364 15 C -0.366 4.366 16 H 0.103 0.897 17 C -0.257 4.257 18 N -0.601 5.601 19 Si 0.810 3.190 20 H -0.189 1.189 21 H -0.215 1.215 22 H -0.220 1.220 23 C -0.012 4.012 24 H 0.083 0.917 25 H 0.056 0.944 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.131 0.869 29 H 0.153 0.847 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.639 -6.426 19.596 20.687 hybrid contribution -0.162 0.424 -1.741 1.799 sum 1.476 -6.002 17.855 18.894 Atomic orbital electron populations 1.22280 0.95262 1.03318 1.01896 1.21766 0.95118 0.80891 1.04095 1.48125 1.64498 1.15144 1.04635 1.20471 0.76022 0.85778 0.85456 1.90664 1.47948 1.19823 1.87742 1.22450 1.08861 1.01118 0.88525 0.83235 1.23292 0.90287 1.03130 1.00346 1.21715 0.98366 0.96120 0.93955 1.21387 1.01275 0.99502 0.94465 1.21257 1.00658 0.93484 1.00289 1.23218 0.97459 0.96743 0.81624 1.22606 0.90844 0.98385 0.84546 1.45998 1.05539 1.82541 1.02347 1.19433 0.94358 1.41072 0.81698 0.89698 1.25658 0.94981 1.02364 1.02705 1.70017 0.98758 1.55923 1.35364 0.84958 0.77881 0.76841 0.79303 1.18922 1.21515 1.21960 1.23062 0.94313 0.98153 0.85626 0.91655 0.94428 0.89346 0.91040 0.86932 0.84663 0.90184 0.91031 0.91896 0.90320 0.93803 0.94288 0.91561 0.89541 0.93510 0.94807 0.94133 0.93437 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 9.91 71.98 0.71 -3.33 16 2 C 0.10 2.54 5.10 86.38 0.44 2.98 16 3 N -0.59 -19.26 2.69 -803.55 -2.16 -21.43 16 4 C 0.53 17.01 7.44 87.65 0.65 17.66 16 5 O -0.58 -23.17 12.59 -3.05 -0.04 -23.21 16 6 C -0.19 -4.04 5.01 -11.52 -0.06 -4.10 16 7 H 0.15 2.31 6.44 -2.39 -0.02 2.29 16 8 C -0.13 -2.41 9.53 30.62 0.29 -2.12 16 9 C -0.10 -1.99 2.70 -52.18 -0.14 -2.13 16 10 C -0.11 -1.40 9.85 71.98 0.71 -0.70 16 11 C -0.10 -2.50 8.09 71.98 0.58 -1.91 16 12 C 0.11 4.80 4.40 46.75 0.21 5.00 16 13 C 0.16 7.92 6.33 86.48 0.55 8.46 16 14 N -0.64 -33.85 3.70 -717.43 -2.65 -36.50 16 15 C -0.24 -13.67 10.70 84.03 0.90 -12.77 16 16 H 0.09 4.68 7.83 -2.91 -0.02 4.65 16 17 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 18 N -0.95 -58.17 11.38 21.65 0.25 -57.92 16 19 Si 0.98 46.31 29.55 68.60 2.03 48.34 16 20 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 23 C 0.11 4.89 8.46 86.48 0.73 5.62 16 24 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.04 1.18 5.85 -2.39 -0.01 1.16 16 26 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.07 1.95 6.36 -2.39 -0.02 1.93 16 28 H 0.11 1.89 6.00 -2.38 -0.01 1.88 16 29 H 0.14 1.55 8.05 -2.39 -0.02 1.53 16 30 H 0.08 1.77 8.05 -2.39 -0.02 1.75 16 31 H 0.07 0.82 7.93 -2.39 -0.02 0.80 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 0.71 7.90 -2.38 -0.02 0.69 16 34 H 0.04 1.29 7.27 -2.38 -0.02 1.27 16 35 H 0.04 1.16 7.01 -2.39 -0.02 1.14 16 36 H 0.07 1.32 7.93 -2.39 -0.02 1.30 16 37 H 0.09 4.08 7.24 -2.39 -0.02 4.07 16 38 H 0.05 2.20 5.01 -2.39 -0.01 2.19 16 39 H 0.03 1.91 7.15 -2.39 -0.02 1.89 16 40 H 0.25 14.74 8.31 -92.70 -0.77 13.97 16 41 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.06 2.24 6.97 -2.38 -0.02 2.22 16 Total: -1.00 -72.07 328.11 4.46 -67.61 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 1.00 Total: 13.66 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 6.04 Total: 9.45 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -4.57 Total: -115.85 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.04 Total: -23.21 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -72.07 4.46 -67.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949909459.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.884 kcal (2) G-P(sol) polarization free energy of solvation -72.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds