Wall clock time and date at job start Mon Mar 30 2020 00:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21281 * 120.00382 * 2 1 4 4 N 1.34775 * 119.99881 * 179.97438 * 2 1 3 5 5 C 1.46929 * 120.63328 * 0.02562 * 4 2 1 6 6 C 1.53196 * 108.77486 * 233.60825 * 5 4 2 7 7 C 1.53035 * 109.30995 * 305.36045 * 6 5 4 8 8 C 1.53042 * 109.54021 * 61.36728 * 7 6 5 9 9 H 1.09004 * 109.49547 * 58.61806 * 8 7 6 10 10 C 1.52994 * 109.49646 * 178.67720 * 8 7 6 11 11 H 1.09006 * 110.64228 * 60.70656 * 10 8 7 12 12 C 1.55155 * 110.72637 * 297.56172 * 10 8 7 13 13 C 1.54914 * 101.58140 * 206.13727 * 12 10 8 14 14 N 1.47423 * 104.83569 * 37.00782 * 13 12 10 15 15 C 1.36931 * 125.65186 * 155.91030 * 14 13 12 16 16 H 1.08001 * 120.00238 * 179.97438 * 15 14 13 17 17 C 1.38813 * 119.99815 * 359.97370 * 15 14 13 18 18 N 1.31617 * 120.00121 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00089 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46884 * 60.00287 * 19 17 15 21 21 H 1.48498 * 109.47429 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47342 * 300.00238 * 19 17 15 23 23 C 1.47326 * 108.73484 * 335.71531 * 14 13 12 24 24 C 1.46924 * 120.63263 * 180.02562 * 4 2 1 25 25 H 1.08999 * 109.47275 * 239.99909 * 1 2 3 26 26 H 1.08998 * 109.47239 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46697 * 119.99738 * 1 2 3 28 28 H 1.08998 * 109.59209 * 113.81639 * 5 4 2 29 29 H 1.09003 * 109.58217 * 353.38921 * 5 4 2 30 30 H 1.09001 * 109.49651 * 65.31212 * 6 5 4 31 31 H 1.09001 * 109.49244 * 185.40784 * 6 5 4 32 32 H 1.09004 * 109.45792 * 181.38956 * 7 6 5 33 33 H 1.08999 * 109.46561 * 301.34510 * 7 6 5 34 34 H 1.09000 * 111.00001 * 324.20721 * 12 10 8 35 35 H 1.08998 * 111.00527 * 88.05981 * 12 10 8 36 36 H 1.08998 * 110.36322 * 155.84501 * 13 12 10 37 37 H 1.08995 * 110.36320 * 278.16523 * 13 12 10 38 38 H 0.96999 * 120.00447 * 180.02562 * 18 17 15 39 39 H 1.08999 * 110.06223 * 241.87260 * 23 14 13 40 40 H 1.08997 * 109.84684 * 120.60928 * 23 14 13 41 41 H 1.08999 * 109.58511 * 6.60547 * 24 4 2 42 42 H 1.09005 * 109.70744 * 246.25091 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4603 -2.4477 0.0005 6 6 1.9680 -3.2991 1.1685 7 6 3.4893 -3.4341 1.0725 8 6 4.1332 -2.0491 1.1689 9 1 3.8493 -1.5807 2.1113 10 6 5.6555 -2.1881 1.1060 11 1 5.9612 -2.6429 0.1636 12 6 6.1817 -3.0134 2.3099 13 6 7.6278 -2.4752 2.4475 14 7 7.5265 -1.0373 2.1383 15 6 8.3961 -0.0671 2.5597 16 1 8.2341 0.9628 2.2777 17 6 9.4858 -0.4073 3.3494 18 7 9.6835 -1.6624 3.6927 19 14 10.6725 0.9160 3.9237 20 1 9.9394 1.9192 4.7370 21 1 11.7423 0.2980 4.7476 22 1 11.2789 1.5832 2.7436 23 6 6.3374 -0.8169 1.2969 24 6 3.6500 -1.1835 0.0011 25 1 -0.3634 -0.5138 0.8900 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5138 -0.8901 28 1 1.6428 -2.9698 -0.9387 29 1 0.3920 -2.2657 0.1183 30 1 1.7040 -2.8187 2.1106 31 1 1.5114 -4.2879 1.1233 32 1 3.8505 -4.0601 1.8886 33 1 3.7540 -3.8920 0.1195 34 1 5.6008 -2.8069 3.2088 35 1 6.1815 -4.0794 2.0827 36 1 7.9911 -2.6197 3.4650 37 1 8.2865 -2.9710 1.7346 38 1 10.4448 -1.9002 4.2448 39 1 6.6339 -0.4123 0.3292 40 1 5.6539 -0.1292 1.7950 41 1 4.0266 -0.1674 0.1191 42 1 4.0133 -1.6010 -0.9380 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961090641.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:06 Heat of formation + Delta-G solvation = -44.769691 kcal Electronic energy + Delta-G solvation = -21077.352287 eV Core-core repulsion = 18056.425910 eV Total energy + Delta-G solvation = -3020.926377 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.26975 -39.63994 -37.95499 -35.25686 -33.66023 -32.53378 -31.25408 -30.27038 -28.54580 -26.52547 -25.96962 -23.87291 -22.21544 -21.72700 -20.79276 -19.89954 -18.88622 -18.05238 -16.97474 -16.85600 -16.53500 -16.13478 -15.65077 -15.37313 -14.92958 -14.58898 -14.22940 -14.16721 -14.02714 -13.73382 -13.49116 -13.40601 -13.10321 -13.00864 -12.86333 -12.72635 -12.27890 -12.13879 -12.08831 -11.87843 -11.80794 -11.68468 -11.40389 -11.30421 -11.08478 -10.80173 -10.73152 -9.60864 -8.91061 -7.79982 -5.24554 1.42680 1.46512 1.53099 1.63412 2.08521 2.47212 3.28209 3.58025 3.65503 3.79716 3.79895 3.96954 4.14154 4.20120 4.25482 4.32204 4.45176 4.49142 4.57659 4.64728 4.64980 4.67960 4.81353 4.83751 4.89789 4.92376 5.00407 5.06394 5.11292 5.17382 5.22832 5.37587 5.39579 5.44092 5.54650 5.58549 5.67029 5.80744 6.29609 6.48543 7.09311 7.19567 7.76259 8.40537 9.21412 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.028465 B = 0.004578 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.411934 B = 6115.167111 C = 6888.403622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.494 3.506 3 O -0.611 6.611 4 N -0.611 5.611 5 C 0.101 3.899 6 C -0.131 4.131 7 C -0.112 4.112 8 C -0.074 4.074 9 H 0.050 0.950 10 C -0.076 4.076 11 H 0.085 0.915 12 C -0.116 4.116 13 C 0.151 3.849 14 N -0.629 5.629 15 C -0.247 4.247 16 H 0.072 0.928 17 C -0.064 4.064 18 N -0.947 5.947 19 Si 0.981 3.019 20 H -0.279 1.279 21 H -0.287 1.287 22 H -0.279 1.279 23 C 0.136 3.864 24 C 0.116 3.884 25 H 0.112 0.888 26 H 0.084 0.916 27 H 0.118 0.882 28 H 0.088 0.912 29 H 0.116 0.884 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.090 0.910 36 H 0.071 0.929 37 H -0.013 1.013 38 H 0.248 0.752 39 H 0.013 0.987 40 H 0.010 0.990 41 H 0.054 0.946 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.992 -7.869 -7.948 24.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.286 3.714 3 O -0.493 6.493 4 N -0.344 5.344 5 C -0.020 4.020 6 C -0.169 4.169 7 C -0.149 4.149 8 C -0.093 4.093 9 H 0.068 0.932 10 C -0.096 4.096 11 H 0.103 0.897 12 C -0.154 4.154 13 C 0.026 3.974 14 N -0.355 5.355 15 C -0.376 4.376 16 H 0.090 0.910 17 C -0.257 4.257 18 N -0.596 5.596 19 Si 0.808 3.192 20 H -0.205 1.205 21 H -0.213 1.213 22 H -0.205 1.205 23 C 0.011 3.989 24 C -0.008 4.008 25 H 0.131 0.869 26 H 0.103 0.897 27 H 0.136 0.864 28 H 0.106 0.894 29 H 0.134 0.866 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.005 0.995 38 H 0.058 0.942 39 H 0.031 0.969 40 H 0.028 0.972 41 H 0.073 0.927 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.523 -7.310 -7.844 24.046 hybrid contribution 1.450 1.077 0.442 1.860 sum -20.073 -6.233 -7.401 22.284 Atomic orbital electron populations 1.21950 0.87651 1.05953 1.06512 1.21848 0.92707 0.82461 0.74429 1.90712 1.72356 1.33413 1.52839 1.48354 1.06456 1.07338 1.72202 1.22145 0.97816 0.82179 0.99868 1.21932 0.95078 1.01537 0.98313 1.21581 0.95649 0.94356 1.03329 1.21335 0.92861 0.97642 0.97508 0.93158 1.22061 0.94069 0.94306 0.99129 0.89682 1.22838 0.95988 0.99463 0.97151 1.21761 0.93053 0.82423 1.00151 1.44926 1.27371 1.04555 1.58641 1.19409 1.03545 0.89067 1.25617 0.91015 1.25622 1.00345 0.98811 1.00872 1.70050 1.30780 1.16745 1.42053 0.85124 0.78169 0.77972 0.77895 1.20473 1.21262 1.20506 1.21548 0.88109 0.96714 0.92566 1.21519 0.80285 1.00247 0.98710 0.86935 0.89665 0.86399 0.89416 0.86551 0.92401 0.87540 0.91108 0.90357 0.92438 0.89106 0.91141 0.99460 0.94191 0.96920 0.97218 0.92738 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 8.67 71.24 0.62 -1.42 16 2 C 0.49 12.45 7.81 87.66 0.68 13.14 16 3 O -0.61 -22.99 16.50 -3.03 -0.05 -23.04 16 4 N -0.61 -13.29 2.97 -818.91 -2.43 -15.72 16 5 C 0.10 1.14 6.34 86.36 0.55 1.69 16 6 C -0.13 -1.62 6.08 30.67 0.19 -1.43 16 7 C -0.11 -2.05 4.99 30.62 0.15 -1.89 16 8 C -0.07 -2.01 1.72 -10.72 -0.02 -2.03 16 9 H 0.05 1.61 8.12 -2.38 -0.02 1.59 16 10 C -0.08 -2.62 2.48 -9.61 -0.02 -2.64 16 11 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 12 C -0.12 -4.32 5.49 31.99 0.18 -4.14 16 13 C 0.15 7.77 5.89 86.86 0.51 8.28 16 14 N -0.63 -35.05 3.40 -691.21 -2.35 -37.40 16 15 C -0.25 -14.98 10.28 84.03 0.86 -14.11 16 16 H 0.07 4.25 7.83 -2.91 -0.02 4.23 16 17 C -0.06 -3.81 5.49 84.86 0.47 -3.34 16 18 N -0.95 -58.35 10.09 21.65 0.22 -58.14 16 19 Si 0.98 47.84 29.55 68.60 2.03 49.86 16 20 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 21 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 22 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 23 C 0.14 6.22 6.04 86.67 0.52 6.74 16 24 C 0.12 3.18 5.44 86.36 0.47 3.65 16 25 H 0.11 0.87 7.69 -2.39 -0.02 0.85 16 26 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 27 H 0.12 0.75 7.94 -2.38 -0.02 0.73 16 28 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.12 0.59 5.93 -2.39 -0.01 0.58 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 1.34 7.27 -2.38 -0.02 1.32 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 2.16 8.05 -2.39 -0.02 2.14 16 35 H 0.09 2.77 8.08 -2.39 -0.02 2.75 16 36 H 0.07 4.11 5.88 -2.39 -0.01 4.10 16 37 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 38 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 39 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.01 0.47 7.68 -2.39 -0.02 0.45 16 41 H 0.05 1.96 6.39 -2.39 -0.02 1.94 16 42 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -79.69 322.97 3.54 -76.15 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 0.98 Total: 5.80 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 5.16 Total: 2.48 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -4.57 Total: -111.26 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.05 Total: -23.04 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.86 kcal Total: -79.69 3.54 -76.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961090641.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.380 kcal (2) G-P(sol) polarization free energy of solvation -79.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds