Wall clock time and date at job start Mon Mar 30 2020 01:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34769 * 120.00250 * 2 1 4 4 O 1.21289 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00331 * 359.97438 * 3 2 1 6 6 C 1.53005 * 117.49921 * 248.75235 * 5 3 2 7 7 C 1.52996 * 117.50233 * 180.08782 * 5 3 2 8 8 C 1.46505 * 119.99909 * 179.97438 * 2 1 3 9 9 C 1.52996 * 109.46998 * 60.00074 * 8 2 1 10 10 C 1.53000 * 109.47328 * 180.02562 * 9 8 2 11 11 C 1.52997 * 109.47060 * 60.00126 * 10 9 8 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.36932 * 120.00140 * 205.00132 * 12 11 10 14 14 H 1.08004 * 120.00449 * 359.97438 * 13 12 11 15 15 C 1.38813 * 119.99838 * 180.02562 * 13 12 11 16 16 N 1.31613 * 120.00147 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99922 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47005 * 89.99771 * 17 15 13 19 19 H 1.48497 * 109.47200 * 209.99711 * 17 15 13 20 20 H 1.48498 * 109.47180 * 329.99943 * 17 15 13 21 21 C 1.53006 * 109.47127 * 300.00449 * 11 10 9 22 22 C 1.52997 * 109.47164 * 59.99836 * 21 11 10 23 23 H 1.09001 * 109.47636 * 270.00400 * 1 2 3 24 24 H 1.09008 * 109.46827 * 30.00253 * 1 2 3 25 25 H 1.08998 * 109.47013 * 149.99774 * 1 2 3 26 26 H 1.09003 * 115.54825 * 34.40787 * 5 3 2 27 27 H 1.08995 * 117.49526 * 359.97438 * 6 5 3 28 28 H 1.08996 * 117.50238 * 145.01574 * 6 5 3 29 29 H 1.09008 * 117.49765 * 214.97511 * 7 5 3 30 30 H 1.08994 * 117.50356 * 359.97360 * 7 5 3 31 31 H 1.08992 * 109.47276 * 180.02562 * 8 2 1 32 32 H 1.09004 * 109.47368 * 60.00227 * 9 8 2 33 33 H 1.09001 * 109.47372 * 300.00383 * 9 8 2 34 34 H 1.09002 * 109.47398 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.47194 * 300.00476 * 10 9 8 36 36 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 37 37 H 0.97005 * 119.99374 * 25.00210 * 12 11 10 38 38 H 0.96998 * 120.00493 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.47002 * 299.99574 * 21 11 10 40 40 H 1.09000 * 109.47050 * 179.97438 * 21 11 10 41 41 H 1.09002 * 109.47045 * 180.02562 * 22 21 11 42 42 H 1.09001 * 109.47375 * 59.99966 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 6 1.4588 3.3297 -1.2657 7 6 2.2076 3.7626 -0.0026 8 6 2.1975 -1.2688 0.0006 9 6 1.8279 -2.0716 -1.2483 10 6 2.5923 -3.3969 -1.2475 11 6 2.2221 -4.1984 0.0021 12 7 2.9545 -5.4672 0.0033 13 6 2.4551 -6.5454 0.6839 14 1 1.5215 -6.4604 1.2202 15 6 3.1494 -7.7474 0.6854 16 7 4.2873 -7.8509 0.0323 17 14 2.4686 -9.2181 1.6145 18 1 1.5933 -10.0105 0.7139 19 1 3.5909 -10.0677 2.0874 20 1 1.6802 -8.7451 2.7807 21 6 2.5916 -3.3956 1.2510 22 6 1.8271 -2.0703 1.2501 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 0.4476 2.4739 0.5548 27 1 2.0523 2.9500 -2.0973 28 1 0.5694 3.8958 -1.5423 29 1 1.8104 4.6133 0.5512 30 1 3.2934 3.6676 -0.0031 31 1 3.2691 -1.0697 0.0009 32 1 2.0912 -1.5004 -2.1386 33 1 0.7562 -2.2707 -1.2483 34 1 2.3293 -3.9687 -2.1374 35 1 3.6641 -3.1982 -1.2472 36 1 1.1504 -4.3972 0.0020 37 1 3.7932 -5.5434 -0.4781 38 1 4.7723 -8.6910 0.0330 39 1 3.6634 -3.1968 1.2513 40 1 2.3274 -3.9664 2.1412 41 1 2.0908 -1.4981 2.1397 42 1 0.7554 -2.2690 1.2499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962975396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:38 Heat of formation + Delta-G solvation = -10.346312 kcal Electronic energy + Delta-G solvation = -20612.742775 eV Core-core repulsion = 17593.309108 eV Total energy + Delta-G solvation = -3019.433667 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39656 -38.31057 -36.26775 -35.39810 -33.36308 -30.84486 -30.39486 -27.93199 -26.88528 -24.71738 -23.22224 -22.70557 -22.23336 -20.82628 -19.34427 -18.95706 -17.56517 -16.97280 -16.41782 -15.50720 -15.20750 -14.80405 -14.45627 -13.91486 -13.80031 -13.55233 -13.11658 -12.92252 -12.78107 -12.58692 -12.36445 -12.03031 -11.82248 -11.77807 -11.40203 -10.89678 -10.88779 -10.79191 -10.72388 -10.68758 -10.59730 -10.17881 -10.10830 -9.81872 -9.69608 -9.53618 -8.85862 -8.60102 -6.92529 -5.73878 -3.02401 2.38996 2.88453 3.44546 3.49561 3.51452 3.61985 4.30081 4.51879 4.60693 4.61644 4.80359 4.96659 4.99812 5.05815 5.29404 5.32225 5.33117 5.43893 5.50592 5.54727 5.61016 5.66283 5.68333 5.80735 5.85801 5.87594 5.91020 6.07491 6.28373 6.30277 6.34688 6.46186 6.59873 6.68663 6.72870 7.00458 7.15500 7.35060 7.72018 8.13492 8.44929 9.55768 10.14810 10.49406 11.48935 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.049812 B = 0.003523 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.974691 B = 7945.919207 C = 8046.293568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.606 5.606 3 C 0.540 3.460 4 O -0.542 6.542 5 C -0.193 4.193 6 C -0.153 4.153 7 C -0.150 4.150 8 C 0.139 3.861 9 C -0.118 4.118 10 C -0.121 4.121 11 C 0.178 3.822 12 N -0.726 5.726 13 C -0.237 4.237 14 H 0.070 0.930 15 C -0.015 4.015 16 N -0.933 5.933 17 Si 0.905 3.095 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.132 4.132 22 C -0.120 4.120 23 H 0.055 0.945 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.123 0.877 27 H 0.099 0.901 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.045 0.955 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.689 21.587 -1.673 23.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.338 5.338 3 C 0.328 3.672 4 O -0.419 6.419 5 C -0.214 4.214 6 C -0.191 4.191 7 C -0.187 4.187 8 C 0.037 3.963 9 C -0.157 4.157 10 C -0.160 4.160 11 C 0.068 3.932 12 N -0.366 5.366 13 C -0.368 4.368 14 H 0.088 0.912 15 C -0.211 4.211 16 N -0.582 5.582 17 Si 0.737 3.263 18 H -0.218 1.218 19 H -0.218 1.218 20 H -0.208 1.208 21 C -0.173 4.173 22 C -0.160 4.160 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.141 0.859 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.126 0.874 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.144 21.424 -1.574 23.347 hybrid contribution -0.265 -0.966 0.496 1.118 sum -9.409 20.458 -1.078 22.544 Atomic orbital electron populations 1.21792 0.79838 1.03294 1.01846 1.47896 1.06999 1.05950 1.72950 1.19685 0.87337 0.84437 0.75694 1.90692 1.13911 1.87185 1.50151 1.22234 1.02640 0.90995 1.05566 1.22935 1.03156 1.01515 0.91465 1.22962 1.00164 0.95324 1.00252 1.21262 0.97923 0.81498 0.95658 1.21806 1.00706 0.96459 0.96758 1.21769 1.00077 0.94424 0.99746 1.20221 0.95692 0.86217 0.91040 1.42440 1.26001 1.06594 1.61554 1.19240 1.04040 0.89513 1.24028 0.91241 1.24742 0.97277 0.97984 1.01069 1.69658 1.16065 1.25728 1.46724 0.86212 0.77683 0.83050 0.79389 1.21783 1.21817 1.20804 1.22238 0.99655 0.93841 1.01612 1.21855 1.00720 0.97009 0.96377 0.92616 0.91092 0.90492 0.85927 0.88268 0.87867 0.88022 0.87415 0.88204 0.92262 0.91820 0.91499 0.92026 0.93651 0.78286 0.93544 0.92465 0.91703 0.92643 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 9.06 59.85 0.54 1.17 16 2 N -0.61 -7.30 2.76 -173.93 -0.48 -7.78 16 3 C 0.54 7.12 7.46 -10.99 -0.08 7.04 16 4 O -0.54 -9.33 15.59 5.55 0.09 -9.24 16 5 C -0.19 -1.77 4.79 -91.77 -0.44 -2.21 16 6 C -0.15 -1.17 10.24 -26.69 -0.27 -1.44 16 7 C -0.15 -1.26 10.05 -26.69 -0.27 -1.53 16 8 C 0.14 1.96 2.52 -67.93 -0.17 1.79 16 9 C -0.12 -1.62 5.18 -26.73 -0.14 -1.76 16 10 C -0.12 -2.03 5.39 -26.73 -0.14 -2.18 16 11 C 0.18 3.52 2.77 -67.93 -0.19 3.33 16 12 N -0.73 -18.30 5.12 -53.42 -0.27 -18.57 16 13 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 14 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 15 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 16 N -0.93 -28.47 13.06 55.49 0.72 -27.74 16 17 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C -0.13 -2.40 5.50 -26.73 -0.15 -2.55 16 22 C -0.12 -1.75 5.20 -26.73 -0.14 -1.89 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.07 0.45 6.64 -51.92 -0.34 0.10 16 25 H 0.08 0.62 6.43 -51.93 -0.33 0.29 16 26 H 0.12 0.85 7.27 -51.93 -0.38 0.48 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.10 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.11 1.11 7.67 -51.93 -0.40 0.71 16 31 H 0.10 1.67 6.90 -51.93 -0.36 1.31 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.79 6.66 -51.93 -0.35 0.45 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 37 H 0.38 10.34 7.80 -40.82 -0.32 10.02 16 38 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.81 7.67 -51.93 -0.40 0.41 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -32.43 333.67 -8.70 -41.13 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -7.07 Total: 7.19 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -1.69 Total: -7.49 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.03 Total: -54.09 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.43 -8.70 -41.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962975396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.788 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds