Wall clock time and date at job start Mon Mar 30 2020 01:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34769 * 120.00250 * 2 1 4 4 O 1.21289 * 120.00300 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.00331 * 359.97438 * 3 2 1 6 6 C 1.53005 * 117.49921 * 248.75235 * 5 3 2 7 7 C 1.52996 * 117.50233 * 180.08782 * 5 3 2 8 8 C 1.46505 * 119.99909 * 179.97438 * 2 1 3 9 9 C 1.52996 * 109.46998 * 60.00074 * 8 2 1 10 10 C 1.53000 * 109.47328 * 180.02562 * 9 8 2 11 11 C 1.52997 * 109.47060 * 60.00126 * 10 9 8 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.36932 * 120.00140 * 205.00132 * 12 11 10 14 14 H 1.08004 * 120.00449 * 359.97438 * 13 12 11 15 15 C 1.38813 * 119.99838 * 180.02562 * 13 12 11 16 16 N 1.31613 * 120.00147 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99922 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47005 * 89.99771 * 17 15 13 19 19 H 1.48497 * 109.47200 * 209.99711 * 17 15 13 20 20 H 1.48498 * 109.47180 * 329.99943 * 17 15 13 21 21 C 1.53006 * 109.47127 * 300.00449 * 11 10 9 22 22 C 1.52997 * 109.47164 * 59.99836 * 21 11 10 23 23 H 1.09001 * 109.47636 * 270.00400 * 1 2 3 24 24 H 1.09008 * 109.46827 * 30.00253 * 1 2 3 25 25 H 1.08998 * 109.47013 * 149.99774 * 1 2 3 26 26 H 1.09003 * 115.54825 * 34.40787 * 5 3 2 27 27 H 1.08995 * 117.49526 * 359.97438 * 6 5 3 28 28 H 1.08996 * 117.50238 * 145.01574 * 6 5 3 29 29 H 1.09008 * 117.49765 * 214.97511 * 7 5 3 30 30 H 1.08994 * 117.50356 * 359.97360 * 7 5 3 31 31 H 1.08992 * 109.47276 * 180.02562 * 8 2 1 32 32 H 1.09004 * 109.47368 * 60.00227 * 9 8 2 33 33 H 1.09001 * 109.47372 * 300.00383 * 9 8 2 34 34 H 1.09002 * 109.47398 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.47194 * 300.00476 * 10 9 8 36 36 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 37 37 H 0.97005 * 119.99374 * 25.00210 * 12 11 10 38 38 H 0.96998 * 120.00493 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.47002 * 299.99574 * 21 11 10 40 40 H 1.09000 * 109.47050 * 179.97438 * 21 11 10 41 41 H 1.09002 * 109.47045 * 180.02562 * 22 21 11 42 42 H 1.09001 * 109.47375 * 59.99966 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3518 1.1671 0.0005 5 6 1.3855 2.4723 -0.0006 6 6 1.4588 3.3297 -1.2657 7 6 2.2076 3.7626 -0.0026 8 6 2.1975 -1.2688 0.0006 9 6 1.8279 -2.0716 -1.2483 10 6 2.5923 -3.3969 -1.2475 11 6 2.2221 -4.1984 0.0021 12 7 2.9545 -5.4672 0.0033 13 6 2.4551 -6.5454 0.6839 14 1 1.5215 -6.4604 1.2202 15 6 3.1494 -7.7474 0.6854 16 7 4.2873 -7.8509 0.0323 17 14 2.4686 -9.2181 1.6145 18 1 1.5933 -10.0105 0.7139 19 1 3.5909 -10.0677 2.0874 20 1 1.6802 -8.7451 2.7807 21 6 2.5916 -3.3956 1.2510 22 6 1.8271 -2.0703 1.2501 23 1 -0.3634 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 0.4476 2.4739 0.5548 27 1 2.0523 2.9500 -2.0973 28 1 0.5694 3.8958 -1.5423 29 1 1.8104 4.6133 0.5512 30 1 3.2934 3.6676 -0.0031 31 1 3.2691 -1.0697 0.0009 32 1 2.0912 -1.5004 -2.1386 33 1 0.7562 -2.2707 -1.2483 34 1 2.3293 -3.9687 -2.1374 35 1 3.6641 -3.1982 -1.2472 36 1 1.1504 -4.3972 0.0020 37 1 3.7932 -5.5434 -0.4781 38 1 4.7723 -8.6910 0.0330 39 1 3.6634 -3.1968 1.2513 40 1 2.3274 -3.9664 2.1412 41 1 2.0908 -1.4981 2.1397 42 1 0.7554 -2.2690 1.2499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962975396.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:38 Heat of formation + Delta-G solvation = -30.528183 kcal Electronic energy + Delta-G solvation = -20613.617927 eV Core-core repulsion = 17593.309108 eV Total energy + Delta-G solvation = -3020.308819 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.40393 -39.55887 -37.19230 -36.63758 -35.07375 -32.66322 -31.73384 -29.45116 -27.73090 -26.11126 -24.77360 -23.59136 -23.30344 -22.16977 -20.73166 -19.87263 -19.11203 -18.36781 -17.46443 -16.87897 -16.39157 -16.03101 -15.52055 -15.36789 -15.25116 -15.03852 -14.52622 -14.06119 -13.99984 -13.53562 -13.42956 -13.21143 -13.12527 -13.00283 -12.81325 -12.45803 -12.37098 -12.20505 -12.09585 -12.01158 -11.65672 -11.53651 -11.49631 -11.39036 -11.14651 -10.86378 -10.76498 -9.61238 -9.00318 -7.93136 -5.21835 1.46600 1.47090 1.49043 1.57271 1.95896 2.56896 2.93910 3.39712 3.51079 3.75154 3.82554 3.85499 3.89076 4.00409 4.19379 4.23300 4.33460 4.34520 4.38255 4.51751 4.56991 4.61047 4.75515 4.77246 4.81042 4.90630 4.92580 5.01167 5.05903 5.09272 5.14011 5.20743 5.24374 5.24807 5.48350 5.53108 5.60053 5.61809 6.29122 6.42385 7.16859 7.34372 8.11466 8.34250 9.30804 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.049812 B = 0.003523 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.974691 B = 7945.919207 C = 8046.293568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.603 5.603 3 C 0.529 3.471 4 O -0.596 6.596 5 C -0.196 4.196 6 C -0.138 4.138 7 C -0.157 4.157 8 C 0.143 3.857 9 C -0.105 4.105 10 C -0.113 4.113 11 C 0.174 3.826 12 N -0.741 5.741 13 C -0.236 4.236 14 H 0.078 0.922 15 C -0.080 4.080 16 N -0.973 5.973 17 Si 0.972 3.028 18 H -0.286 1.286 19 H -0.299 1.299 20 H -0.268 1.268 21 C -0.124 4.124 22 C -0.106 4.106 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.083 0.917 26 H 0.154 0.846 27 H 0.083 0.917 28 H 0.137 0.863 29 H 0.129 0.871 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.051 0.949 37 H 0.370 0.630 38 H 0.250 0.750 39 H 0.036 0.964 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.027 23.304 -1.432 26.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.334 5.334 3 C 0.319 3.681 4 O -0.477 6.477 5 C -0.217 4.217 6 C -0.175 4.175 7 C -0.194 4.194 8 C 0.040 3.960 9 C -0.144 4.144 10 C -0.152 4.152 11 C 0.066 3.934 12 N -0.380 5.380 13 C -0.368 4.368 14 H 0.096 0.904 15 C -0.272 4.272 16 N -0.624 5.624 17 Si 0.802 3.198 18 H -0.213 1.213 19 H -0.225 1.225 20 H -0.193 1.193 21 C -0.165 4.165 22 C -0.145 4.145 23 H 0.088 0.912 24 H 0.116 0.884 25 H 0.102 0.898 26 H 0.172 0.828 27 H 0.101 0.899 28 H 0.155 0.845 29 H 0.147 0.853 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.201 0.799 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.560 23.184 -1.323 26.400 hybrid contribution 0.776 -1.428 0.410 1.676 sum -11.784 21.755 -0.914 24.759 Atomic orbital electron populations 1.22118 0.76992 1.05028 1.03354 1.47936 1.08616 1.04671 1.72143 1.20497 0.87020 0.85976 0.74589 1.90670 1.16450 1.88009 1.52613 1.22288 1.03308 0.88709 1.07371 1.23040 1.03779 1.00403 0.90261 1.23027 0.98800 0.95982 1.01640 1.20962 0.96651 0.82818 0.95602 1.21686 1.01475 0.94354 0.96846 1.21649 0.99750 0.95768 0.98070 1.20459 0.95248 0.84689 0.92962 1.42697 1.25915 1.08145 1.61202 1.19648 1.03893 0.90170 1.23050 0.90408 1.25582 0.97889 1.00980 1.02762 1.69827 1.17660 1.26076 1.48845 0.85147 0.76803 0.79435 0.78451 1.21306 1.22538 1.19300 1.22039 0.98995 0.95528 0.99895 1.21699 1.01317 0.94731 0.96754 0.91174 0.88434 0.89812 0.82796 0.89871 0.84490 0.85307 0.90265 0.91540 0.91446 0.89410 0.91768 0.93499 0.93076 0.79866 0.94157 0.94501 0.93368 0.92458 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 9.06 127.77 1.16 1.99 16 2 N -0.60 -13.22 2.76 -822.59 -2.27 -15.49 16 3 C 0.53 13.37 7.46 87.66 0.65 14.02 16 4 O -0.60 -21.14 15.59 -3.06 -0.05 -21.18 16 5 C -0.20 -3.04 4.79 -11.54 -0.06 -3.09 16 6 C -0.14 -1.69 10.24 30.62 0.31 -1.38 16 7 C -0.16 -2.36 10.05 30.62 0.31 -2.05 16 8 C 0.14 3.92 2.52 44.99 0.11 4.04 16 9 C -0.10 -2.69 5.18 30.59 0.16 -2.54 16 10 C -0.11 -3.80 5.39 30.59 0.16 -3.63 16 11 C 0.17 6.87 2.77 44.99 0.12 6.99 16 12 N -0.74 -38.10 5.12 -322.94 -1.65 -39.75 16 13 C -0.24 -13.18 9.93 84.03 0.83 -12.35 16 14 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 15 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 16 N -0.97 -60.85 13.06 21.65 0.28 -60.57 16 17 Si 0.97 46.58 29.55 68.60 2.03 48.60 16 18 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 19 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 C -0.12 -4.52 5.50 30.60 0.17 -4.35 16 22 C -0.11 -2.94 5.20 30.59 0.16 -2.78 16 23 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.10 0.74 6.64 -2.38 -0.02 0.72 16 25 H 0.08 0.96 6.43 -2.39 -0.02 0.95 16 26 H 0.15 1.41 7.27 -2.39 -0.02 1.39 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.13 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.08 1.66 7.67 -2.39 -0.02 1.64 16 31 H 0.07 2.30 6.90 -2.39 -0.02 2.28 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.09 1.87 6.66 -2.39 -0.02 1.86 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 37 H 0.37 20.72 7.80 -92.70 -0.72 20.00 16 38 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 1.97 7.67 -2.39 -0.02 1.95 16 Total: -1.00 -73.21 333.67 3.18 -70.03 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.27 Total: 27.70 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 4.57 Total: -9.34 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -3.64 Total: -115.82 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.05 Total: -21.18 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.60 kcal Total: -73.21 3.18 -70.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962975396.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.501 kcal (2) G-P(sol) polarization free energy of solvation -73.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds