Wall clock time and date at job start Mon Mar 30 2020 00:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00064 * 2 1 4 4 N 1.34770 * 119.99807 * 179.97438 * 2 1 3 5 5 C 1.46926 * 120.63349 * 0.02562 * 4 2 1 6 6 C 1.53192 * 108.77619 * 233.58875 * 5 4 2 7 7 C 1.53040 * 109.31348 * 305.36318 * 6 5 4 8 8 C 1.53043 * 109.53656 * 61.37130 * 7 6 5 9 9 H 1.08999 * 109.52732 * 58.59567 * 8 7 6 10 10 C 1.53000 * 109.49712 * 178.68603 * 8 7 6 11 11 H 1.09001 * 109.87335 * 180.87449 * 10 8 7 12 12 C 1.54325 * 110.01455 * 59.76944 * 10 8 7 13 13 C 1.55154 * 102.94245 * 218.32039 * 12 10 8 14 14 C 1.54910 * 101.58056 * 35.50216 * 13 12 10 15 15 N 1.47024 * 109.87831 * 301.88232 * 10 8 7 16 16 C 1.36936 * 125.65205 * 298.55231 * 15 10 8 17 17 H 1.08005 * 119.99613 * 345.68700 * 16 15 10 18 18 C 1.38814 * 120.00224 * 165.68633 * 16 15 10 19 19 N 1.31619 * 119.99603 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 119.99970 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47368 * 89.99824 * 20 18 16 22 22 H 1.48497 * 109.47203 * 209.99987 * 20 18 16 23 23 H 1.48504 * 109.47424 * 329.99825 * 20 18 16 24 24 C 1.46930 * 120.63124 * 180.02562 * 4 2 1 25 25 H 1.08997 * 109.47553 * 270.00400 * 1 2 3 26 26 H 1.09007 * 109.47125 * 30.00504 * 1 2 3 27 27 H 1.08999 * 109.47408 * 150.00007 * 1 2 3 28 28 H 1.09002 * 109.58816 * 353.37592 * 5 4 2 29 29 H 1.09003 * 109.58538 * 113.79921 * 5 4 2 30 30 H 1.09006 * 109.49909 * 65.31885 * 6 5 4 31 31 H 1.09004 * 109.49764 * 185.38172 * 6 5 4 32 32 H 1.08994 * 109.45890 * 301.34581 * 7 6 5 33 33 H 1.09007 * 109.45991 * 181.38622 * 7 6 5 34 34 H 1.08999 * 110.71575 * 336.68460 * 12 10 8 35 35 H 1.08997 * 110.71987 * 99.95124 * 12 10 8 36 36 H 1.09001 * 111.00621 * 277.42710 * 13 12 10 37 37 H 1.08994 * 111.03415 * 153.59028 * 13 12 10 38 38 H 1.09009 * 110.36416 * 204.15385 * 14 13 12 39 39 H 1.08993 * 110.36773 * 81.83446 * 14 13 12 40 40 H 0.97003 * 119.99728 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.58466 * 6.62325 * 24 4 2 42 42 H 1.08998 * 109.58477 * 246.20361 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4603 -2.4476 0.0005 6 6 1.9683 -3.2993 1.1682 7 6 3.4897 -3.4343 1.0719 8 6 4.1335 -2.0492 1.1684 9 1 3.8498 -1.5805 2.1107 10 6 5.6558 -2.1882 1.1050 11 1 6.1214 -1.2062 1.1888 12 6 6.0705 -2.8539 -0.2241 13 6 7.2438 -3.7761 0.2003 14 6 6.7835 -4.2382 1.6054 15 7 6.1243 -3.0581 2.1937 16 6 5.9725 -2.8133 3.5325 17 1 5.6876 -1.8285 3.8724 18 6 6.1849 -3.8307 4.4526 19 7 6.5316 -5.0309 4.0382 20 14 5.9772 -3.4968 6.2787 21 1 4.5722 -3.7692 6.6751 22 1 6.8891 -4.3791 7.0501 23 1 6.3051 -2.0765 6.5627 24 6 3.6500 -1.1834 0.0011 25 1 -0.3634 0.0001 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 0.3920 -2.2658 0.1185 29 1 1.6426 -2.9695 -0.9389 30 1 1.7045 -2.8191 2.1105 31 1 1.5113 -4.2879 1.1232 32 1 3.7540 -3.8920 0.1186 33 1 3.8511 -4.0603 1.8877 34 1 5.2484 -3.4401 -0.6347 35 1 6.4079 -2.1057 -0.9414 36 1 8.1781 -3.2176 0.2593 37 1 7.3401 -4.6239 -0.4778 38 1 7.6427 -4.5326 2.2083 39 1 6.0776 -5.0643 1.5207 40 1 6.6804 -5.7418 4.6812 41 1 4.0266 -0.1674 0.1195 42 1 4.0112 -1.6020 -0.9383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963211560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:57 Heat of formation + Delta-G solvation = -17.992953 kcal Electronic energy + Delta-G solvation = -21747.130080 eV Core-core repulsion = 18727.364830 eV Total energy + Delta-G solvation = -3019.765251 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.08361 -38.25637 -36.33736 -32.98270 -32.28140 -31.35362 -29.74395 -29.18569 -26.55386 -24.83032 -24.50301 -22.51371 -21.29426 -20.18407 -18.95645 -18.28178 -17.04686 -16.55168 -15.68173 -15.25945 -15.03592 -14.54829 -14.09787 -13.96550 -13.75342 -13.29290 -13.08608 -12.85032 -12.63149 -12.12729 -12.05218 -11.94995 -11.72210 -11.53569 -11.09271 -10.87674 -10.82803 -10.66550 -10.36256 -10.20821 -10.08377 -9.91114 -9.80006 -9.63554 -9.52368 -9.41277 -8.55825 -8.39897 -6.74093 -5.72708 -3.06897 2.73288 3.17471 3.39380 3.45819 3.46996 4.50321 4.64471 4.90709 5.07800 5.18124 5.25288 5.30187 5.34315 5.45992 5.49252 5.55419 5.72912 5.76170 5.79328 5.82853 5.88359 5.95179 6.03160 6.12339 6.24457 6.31622 6.39840 6.49961 6.58433 6.65042 6.72664 6.82395 7.02601 7.07081 7.19222 7.56290 7.58668 7.65647 7.83285 8.28865 8.31883 9.23357 9.84346 10.53709 11.39312 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019913 B = 0.006381 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.810600 B = 4387.181752 C = 5009.019555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.508 3.492 3 O -0.555 6.555 4 N -0.607 5.607 5 C 0.106 3.894 6 C -0.135 4.135 7 C -0.105 4.105 8 C -0.104 4.104 9 H 0.069 0.931 10 C 0.167 3.833 11 H 0.033 0.967 12 C -0.129 4.129 13 C -0.150 4.150 14 C 0.174 3.826 15 N -0.590 5.590 16 C -0.222 4.222 17 H 0.072 0.928 18 C -0.004 4.004 19 N -0.918 5.918 20 Si 0.906 3.094 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.114 3.886 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.024 0.976 40 H 0.252 0.748 41 H 0.085 0.915 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.953 2.273 -10.087 14.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.297 3.703 3 O -0.434 6.434 4 N -0.341 5.341 5 C -0.017 4.017 6 C -0.173 4.173 7 C -0.142 4.142 8 C -0.125 4.125 9 H 0.088 0.912 10 C 0.059 3.941 11 H 0.050 0.950 12 C -0.167 4.167 13 C -0.189 4.189 14 C 0.050 3.950 15 N -0.314 5.314 16 C -0.351 4.351 17 H 0.090 0.910 18 C -0.201 4.201 19 N -0.565 5.565 20 Si 0.736 3.264 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.009 4.009 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.042 0.958 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.589 2.703 -9.873 14.026 hybrid contribution -0.245 -0.030 1.090 1.118 sum -9.834 2.673 -8.782 13.453 Atomic orbital electron populations 1.21956 0.92431 1.04428 1.04624 1.20746 0.90456 0.83280 0.75822 1.90694 1.70735 1.31155 1.50776 1.48233 1.07609 1.05767 1.72447 1.21845 0.96227 0.84252 0.99406 1.21949 0.98271 0.99195 0.97902 1.21479 0.92301 0.97698 1.02766 1.21939 0.98157 0.95200 0.97219 0.91217 1.20882 0.90493 0.94255 0.88484 0.94979 1.22679 0.98524 0.98706 0.96808 1.23010 0.97354 0.98386 1.00105 1.21404 0.96631 0.88812 0.88187 1.44467 1.64733 1.21713 1.00495 1.18947 1.40690 0.94928 0.80501 0.91000 1.24836 1.01995 0.95343 0.97897 1.69937 1.52835 1.01352 1.32379 0.86214 0.77473 0.77300 0.85388 1.21678 1.21752 1.20715 1.21797 0.78140 1.01885 0.99054 0.89012 0.89268 0.90058 0.90045 0.91569 0.91750 0.91270 0.92769 0.89309 0.91523 0.92618 0.92524 0.92618 0.91328 0.95793 0.93812 0.89643 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 9.46 36.01 0.34 -1.33 16 2 C 0.51 7.46 7.81 -10.99 -0.09 7.37 16 3 O -0.55 -10.51 16.51 5.55 0.09 -10.42 16 4 N -0.61 -8.59 2.97 -172.78 -0.51 -9.11 16 5 C 0.11 1.18 6.22 -3.71 -0.02 1.16 16 6 C -0.13 -1.83 6.08 -26.61 -0.16 -1.99 16 7 C -0.11 -1.79 4.74 -26.69 -0.13 -1.92 16 8 C -0.10 -1.87 2.10 -90.51 -0.19 -2.06 16 9 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 10 C 0.17 3.34 2.95 -66.95 -0.20 3.14 16 11 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 12 C -0.13 -2.20 5.11 -24.90 -0.13 -2.32 16 13 C -0.15 -2.78 7.08 -24.58 -0.17 -2.95 16 14 C 0.17 4.08 5.41 -2.53 -0.01 4.07 16 15 N -0.59 -14.29 2.29 -162.57 -0.37 -14.66 16 16 C -0.22 -5.99 9.84 -15.06 -0.15 -6.14 16 17 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 18 C 0.00 -0.11 5.47 -17.43 -0.10 -0.21 16 19 N -0.92 -26.20 10.56 55.49 0.59 -25.61 16 20 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.11 1.80 5.57 -3.72 -0.02 1.78 16 25 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.08 0.58 6.19 -51.93 -0.32 0.26 16 28 H 0.08 0.69 5.52 -51.93 -0.29 0.41 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.87 6.13 -51.93 -0.32 0.55 16 33 H 0.09 1.91 7.53 -51.93 -0.39 1.52 16 34 H 0.07 1.06 5.54 -51.93 -0.29 0.78 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.82 6.91 -51.92 -0.36 1.46 16 39 H 0.02 0.60 8.07 -51.93 -0.42 0.18 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.09 1.50 7.01 -51.93 -0.36 1.14 16 42 H 0.06 0.94 6.93 -51.93 -0.36 0.58 16 LS Contribution 318.33 15.07 4.80 4.80 Total: -1.00 -31.00 318.33 -8.33 -39.33 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.87 Total: 0.14 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -1.02 Total: -1.40 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.30 Total: -49.38 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.00 -8.33 -39.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963211560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.337 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds