Wall clock time and date at job start Mon Mar 30 2020 00:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00064 * 2 1 4 4 N 1.34770 * 119.99807 * 179.97438 * 2 1 3 5 5 C 1.46926 * 120.63349 * 0.02562 * 4 2 1 6 6 C 1.53192 * 108.77619 * 233.58875 * 5 4 2 7 7 C 1.53040 * 109.31348 * 305.36318 * 6 5 4 8 8 C 1.53043 * 109.53656 * 61.37130 * 7 6 5 9 9 H 1.08999 * 109.52732 * 58.59567 * 8 7 6 10 10 C 1.53000 * 109.49712 * 178.68603 * 8 7 6 11 11 H 1.09001 * 109.87335 * 180.87449 * 10 8 7 12 12 C 1.54325 * 110.01455 * 59.76944 * 10 8 7 13 13 C 1.55154 * 102.94245 * 218.32039 * 12 10 8 14 14 C 1.54910 * 101.58056 * 35.50216 * 13 12 10 15 15 N 1.47024 * 109.87831 * 301.88232 * 10 8 7 16 16 C 1.36936 * 125.65205 * 298.55231 * 15 10 8 17 17 H 1.08005 * 119.99613 * 345.68700 * 16 15 10 18 18 C 1.38814 * 120.00224 * 165.68633 * 16 15 10 19 19 N 1.31619 * 119.99603 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 119.99970 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47368 * 89.99824 * 20 18 16 22 22 H 1.48497 * 109.47203 * 209.99987 * 20 18 16 23 23 H 1.48504 * 109.47424 * 329.99825 * 20 18 16 24 24 C 1.46930 * 120.63124 * 180.02562 * 4 2 1 25 25 H 1.08997 * 109.47553 * 270.00400 * 1 2 3 26 26 H 1.09007 * 109.47125 * 30.00504 * 1 2 3 27 27 H 1.08999 * 109.47408 * 150.00007 * 1 2 3 28 28 H 1.09002 * 109.58816 * 353.37592 * 5 4 2 29 29 H 1.09003 * 109.58538 * 113.79921 * 5 4 2 30 30 H 1.09006 * 109.49909 * 65.31885 * 6 5 4 31 31 H 1.09004 * 109.49764 * 185.38172 * 6 5 4 32 32 H 1.08994 * 109.45890 * 301.34581 * 7 6 5 33 33 H 1.09007 * 109.45991 * 181.38622 * 7 6 5 34 34 H 1.08999 * 110.71575 * 336.68460 * 12 10 8 35 35 H 1.08997 * 110.71987 * 99.95124 * 12 10 8 36 36 H 1.09001 * 111.00621 * 277.42710 * 13 12 10 37 37 H 1.08994 * 111.03415 * 153.59028 * 13 12 10 38 38 H 1.09009 * 110.36416 * 204.15385 * 14 13 12 39 39 H 1.08993 * 110.36773 * 81.83446 * 14 13 12 40 40 H 0.97003 * 119.99728 * 179.97438 * 19 18 16 41 41 H 1.09003 * 109.58466 * 6.62325 * 24 4 2 42 42 H 1.08998 * 109.58477 * 246.20361 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4603 -2.4476 0.0005 6 6 1.9683 -3.2993 1.1682 7 6 3.4897 -3.4343 1.0719 8 6 4.1335 -2.0492 1.1684 9 1 3.8498 -1.5805 2.1107 10 6 5.6558 -2.1882 1.1050 11 1 6.1214 -1.2062 1.1888 12 6 6.0705 -2.8539 -0.2241 13 6 7.2438 -3.7761 0.2003 14 6 6.7835 -4.2382 1.6054 15 7 6.1243 -3.0581 2.1937 16 6 5.9725 -2.8133 3.5325 17 1 5.6876 -1.8285 3.8724 18 6 6.1849 -3.8307 4.4526 19 7 6.5316 -5.0309 4.0382 20 14 5.9772 -3.4968 6.2787 21 1 4.5722 -3.7692 6.6751 22 1 6.8891 -4.3791 7.0501 23 1 6.3051 -2.0765 6.5627 24 6 3.6500 -1.1834 0.0011 25 1 -0.3634 0.0001 1.0276 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 0.3920 -2.2658 0.1185 29 1 1.6426 -2.9695 -0.9389 30 1 1.7045 -2.8191 2.1105 31 1 1.5113 -4.2879 1.1232 32 1 3.7540 -3.8920 0.1186 33 1 3.8511 -4.0603 1.8877 34 1 5.2484 -3.4401 -0.6347 35 1 6.4079 -2.1057 -0.9414 36 1 8.1781 -3.2176 0.2593 37 1 7.3401 -4.6239 -0.4778 38 1 7.6427 -4.5326 2.2083 39 1 6.0776 -5.0643 1.5207 40 1 6.6804 -5.7418 4.6812 41 1 4.0266 -0.1674 0.1195 42 1 4.0112 -1.6020 -0.9383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963211560.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:56 Heat of formation + Delta-G solvation = -36.789974 kcal Electronic energy + Delta-G solvation = -21747.945180 eV Core-core repulsion = 18727.364830 eV Total energy + Delta-G solvation = -3020.580351 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.30901 -39.75034 -37.71661 -34.73482 -33.81576 -32.58461 -31.27655 -30.54999 -28.02923 -26.46860 -26.01326 -23.85736 -22.63643 -21.91443 -20.36975 -19.60834 -18.61986 -18.02154 -17.03698 -16.64812 -16.46581 -16.18404 -15.71016 -15.52094 -15.04462 -14.56059 -14.22762 -14.15643 -13.82362 -13.65174 -13.59359 -13.17701 -13.00476 -12.95173 -12.84449 -12.73837 -12.42721 -12.03134 -11.93424 -11.81482 -11.70872 -11.56296 -11.46413 -11.25696 -10.93407 -10.77341 -10.63435 -9.59589 -8.74698 -7.85057 -5.19228 1.42074 1.42418 1.51133 1.63403 2.11289 2.48495 3.33156 3.63022 3.69887 3.86226 3.96397 4.11623 4.13733 4.27507 4.31219 4.34807 4.45235 4.48124 4.53159 4.60630 4.68552 4.77393 4.83124 4.83860 4.88867 4.95806 5.07403 5.11789 5.22237 5.22665 5.33156 5.47151 5.49052 5.56279 5.60589 5.69179 5.72133 5.83192 6.27649 6.50203 7.14352 7.19106 7.82736 8.49980 9.25620 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019913 B = 0.006381 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.810600 B = 4387.181752 C = 5009.019555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.498 3.502 3 O -0.608 6.608 4 N -0.610 5.610 5 C 0.108 3.892 6 C -0.131 4.131 7 C -0.097 4.097 8 C -0.091 4.091 9 H 0.028 0.972 10 C 0.156 3.844 11 H 0.017 0.983 12 C -0.115 4.115 13 C -0.137 4.137 14 C 0.180 3.820 15 N -0.606 5.606 16 C -0.228 4.228 17 H 0.062 0.938 18 C -0.055 4.055 19 N -0.942 5.942 20 Si 0.963 3.037 21 H -0.287 1.287 22 H -0.292 1.292 23 H -0.277 1.277 24 C 0.123 3.877 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.115 0.885 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.085 0.915 38 H 0.028 0.972 39 H 0.001 0.999 40 H 0.246 0.754 41 H 0.062 0.938 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.087 2.183 -12.316 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.289 3.711 3 O -0.491 6.491 4 N -0.342 5.342 5 C -0.013 4.013 6 C -0.169 4.169 7 C -0.134 4.134 8 C -0.113 4.113 9 H 0.046 0.954 10 C 0.049 3.951 11 H 0.035 0.965 12 C -0.152 4.152 13 C -0.176 4.176 14 C 0.055 3.945 15 N -0.330 5.330 16 C -0.358 4.358 17 H 0.080 0.920 18 C -0.249 4.249 19 N -0.591 5.591 20 Si 0.793 3.207 21 H -0.214 1.214 22 H -0.218 1.218 23 H -0.202 1.202 24 C 0.000 4.000 25 H 0.122 0.878 26 H 0.114 0.886 27 H 0.133 0.867 28 H 0.137 0.863 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.047 0.953 39 H 0.019 0.981 40 H 0.056 0.944 41 H 0.081 0.919 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.749 2.609 -12.122 17.082 hybrid contribution 0.445 0.022 1.803 1.857 sum -11.304 2.631 -10.320 15.531 Atomic orbital electron populations 1.21986 0.87959 1.06503 1.05998 1.21748 0.92587 0.82391 0.74373 1.90671 1.72223 1.33034 1.53134 1.48379 1.06837 1.07123 1.71877 1.22084 0.97821 0.82313 0.99126 1.21913 0.95526 1.01024 0.98450 1.21333 0.94956 0.95718 1.01408 1.21691 0.96833 0.96250 0.96484 0.95355 1.21097 0.91767 0.93107 0.89092 0.96548 1.22650 0.98329 0.98935 0.95321 1.22891 0.97842 0.99672 0.97156 1.21191 0.94488 0.88245 0.90573 1.44642 1.65363 1.22432 1.00571 1.19113 1.39737 0.94522 0.82397 0.91982 1.25491 1.02568 0.95349 1.01459 1.70121 1.54062 1.01866 1.33038 0.85306 0.77215 0.77128 0.81095 1.21399 1.21836 1.20239 1.21526 0.79961 0.99957 0.98560 0.87763 0.88551 0.86702 0.86259 0.89003 0.93637 0.88973 0.91046 0.94573 0.89745 0.89556 0.92350 0.89681 0.95332 0.98072 0.94435 0.91950 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 9.46 71.24 0.67 -1.85 16 2 C 0.50 13.60 7.81 87.66 0.68 14.29 16 3 O -0.61 -22.90 16.51 -3.04 -0.05 -22.95 16 4 N -0.61 -15.76 2.97 -818.94 -2.43 -18.20 16 5 C 0.11 1.95 6.22 86.36 0.54 2.49 16 6 C -0.13 -3.27 6.08 30.67 0.19 -3.08 16 7 C -0.10 -3.24 4.74 30.62 0.15 -3.10 16 8 C -0.09 -3.34 2.10 -10.72 -0.02 -3.36 16 9 H 0.03 1.24 8.04 -2.39 -0.02 1.22 16 10 C 0.16 6.34 2.95 45.34 0.13 6.47 16 11 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 12 C -0.11 -3.64 5.11 31.78 0.16 -3.48 16 13 C -0.14 -4.89 7.08 31.99 0.23 -4.66 16 14 C 0.18 8.68 5.41 86.86 0.47 9.15 16 15 N -0.61 -30.51 2.29 -668.24 -1.53 -32.04 16 16 C -0.23 -12.89 9.84 84.03 0.83 -12.07 16 17 H 0.06 3.54 7.83 -2.91 -0.02 3.51 16 18 C -0.05 -3.14 5.47 84.86 0.46 -2.67 16 19 N -0.94 -56.13 10.56 21.65 0.23 -55.90 16 20 Si 0.96 46.65 29.55 68.60 2.03 48.68 16 21 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 22 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 24 C 0.12 3.76 5.57 86.35 0.48 4.24 16 25 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.11 0.97 6.19 -2.39 -0.01 0.95 16 28 H 0.12 1.33 5.52 -2.39 -0.01 1.31 16 29 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 2.12 6.13 -2.39 -0.01 2.11 16 33 H 0.04 1.60 7.53 -2.38 -0.02 1.58 16 34 H 0.08 2.40 5.54 -2.39 -0.01 2.38 16 35 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.03 1.58 6.91 -2.38 -0.02 1.56 16 39 H 0.00 0.07 8.07 -2.39 -0.02 0.05 16 40 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.06 2.21 7.01 -2.39 -0.02 2.19 16 42 H 0.09 2.28 6.93 -2.39 -0.02 2.26 16 Total: -1.00 -73.49 318.33 4.20 -69.28 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: 0.99 Total: 8.75 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 4.97 Total: 2.38 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -3.73 Total: -106.14 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.05 Total: -22.95 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -73.49 4.20 -69.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963211560.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.493 kcal (2) G-P(sol) polarization free energy of solvation -73.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds