Wall clock time and date at job start Mon Mar 30 2020 00:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21286 * 119.99964 * 2 1 4 4 N 1.34777 * 120.00216 * 179.97438 * 2 1 3 5 5 C 1.46932 * 120.63123 * 184.86186 * 4 2 1 6 6 C 1.53186 * 108.77385 * 126.41432 * 5 4 2 7 7 C 1.53034 * 109.31940 * 54.63377 * 6 5 4 8 8 C 1.53047 * 109.53589 * 298.63614 * 7 6 5 9 9 H 1.09003 * 109.49456 * 301.40687 * 8 7 6 10 10 C 1.53000 * 109.49793 * 181.31682 * 8 7 6 11 11 H 1.09000 * 109.87175 * 171.60002 * 10 8 7 12 12 C 1.54324 * 109.87928 * 292.61297 * 10 8 7 13 13 C 1.55162 * 102.94205 * 141.60880 * 12 10 8 14 14 C 1.54906 * 101.58330 * 324.50094 * 13 12 10 15 15 N 1.47019 * 109.88247 * 50.41987 * 10 8 7 16 16 C 1.36935 * 125.64807 * 61.62512 * 15 10 8 17 17 H 1.08002 * 120.00125 * 23.73270 * 16 15 10 18 18 C 1.38812 * 120.00165 * 203.73136 * 16 15 10 19 19 N 1.31618 * 119.99994 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00211 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47482 * 60.00283 * 20 18 16 22 22 H 1.48496 * 109.47341 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.47109 * 300.00298 * 20 18 16 24 24 C 1.46928 * 120.62928 * 4.87821 * 4 2 1 25 25 H 1.08998 * 109.47126 * 245.11192 * 1 2 3 26 26 H 1.09001 * 109.47220 * 5.10944 * 1 2 3 27 27 H 1.08999 * 109.46727 * 125.11390 * 1 2 3 28 28 H 1.08994 * 109.58357 * 6.62249 * 5 4 2 29 29 H 1.08997 * 109.58106 * 246.19697 * 5 4 2 30 30 H 1.09005 * 109.49463 * 294.67716 * 6 5 4 31 31 H 1.09003 * 109.49713 * 174.59062 * 6 5 4 32 32 H 1.08998 * 109.46497 * 178.61369 * 7 6 5 33 33 H 1.09000 * 109.45069 * 58.64204 * 7 6 5 34 34 H 1.08997 * 110.72024 * 259.97443 * 12 10 8 35 35 H 1.09000 * 110.72080 * 23.24683 * 12 10 8 36 36 H 1.09006 * 111.00104 * 82.57183 * 13 12 10 37 37 H 1.09002 * 111.00523 * 206.42147 * 13 12 10 38 38 H 1.08995 * 110.36910 * 155.84690 * 14 13 12 39 39 H 1.08998 * 110.36576 * 278.17178 * 14 13 12 40 40 H 0.97005 * 120.00351 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.58273 * 113.80171 * 24 4 2 42 42 H 1.09000 * 109.58780 * 353.37941 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6462 -1.1855 0.1077 6 6 4.0441 -2.1008 1.2698 7 6 3.4114 -3.4795 1.0680 8 6 1.8868 -3.3465 1.0582 9 1 1.5540 -2.9062 1.9981 10 6 1.2546 -4.7294 0.8892 11 1 0.1757 -4.6633 1.0298 12 6 1.5677 -5.2813 -0.5175 13 6 1.8139 -6.7901 -0.2521 14 6 2.5078 -6.7532 1.1324 15 7 1.8326 -5.6659 1.8641 16 6 1.7566 -5.5477 3.2262 17 1 0.9583 -4.9751 3.6749 18 6 2.7056 -6.1638 4.0304 19 7 3.6788 -6.8612 3.4836 20 14 2.6016 -6.0031 5.8885 21 1 1.3111 -6.5643 6.3625 22 1 3.7247 -6.7471 6.5134 23 1 2.6868 -4.5696 6.2670 24 6 1.4643 -2.4454 -0.1064 25 1 -0.3633 -0.4325 0.9322 26 1 -0.3634 1.0236 -0.0915 27 1 -0.3633 -0.5911 -0.8407 28 1 4.0114 -0.1760 0.2959 29 1 4.0756 -1.5648 -0.8196 30 1 3.6910 -1.6721 2.2078 31 1 5.1293 -2.1994 1.3002 32 1 3.7130 -4.1401 1.8809 33 1 3.7456 -3.8967 0.1181 34 1 0.7175 -5.1408 -1.1850 35 1 2.4620 -4.8107 -0.9262 36 1 0.8721 -7.3368 -0.2026 37 1 2.4726 -7.2174 -1.0081 38 1 2.3705 -7.7019 1.6510 39 1 3.5691 -6.5320 1.0189 40 1 4.3422 -7.2915 4.0455 41 1 1.7159 -2.9273 -1.0511 42 1 0.3900 -2.2671 -0.0595 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963211564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:00 Heat of formation + Delta-G solvation = -22.960994 kcal Electronic energy + Delta-G solvation = -21838.909206 eV Core-core repulsion = 18818.928525 eV Total energy + Delta-G solvation = -3019.980681 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.06308 -38.31818 -36.22620 -32.73403 -32.59994 -31.44088 -29.38648 -29.32862 -26.63816 -24.82203 -24.50016 -22.49790 -21.15322 -20.27826 -19.03276 -18.24766 -16.98108 -16.54190 -15.63950 -15.25233 -15.05444 -14.60329 -14.08507 -13.92767 -13.71469 -13.31972 -12.93370 -12.87526 -12.48492 -12.18116 -12.01591 -11.95105 -11.76570 -11.53905 -11.17633 -10.89201 -10.87034 -10.57015 -10.37206 -10.21312 -10.12519 -9.97625 -9.77340 -9.68503 -9.66479 -9.41727 -8.56157 -8.36680 -6.69744 -5.80600 -3.18930 2.74374 3.20741 3.36803 3.42286 3.42823 4.45818 4.70853 5.05537 5.19260 5.23794 5.31521 5.35564 5.39383 5.43769 5.53040 5.62287 5.70985 5.73259 5.76203 5.85194 5.87882 5.90698 6.02456 6.19312 6.24230 6.32034 6.39310 6.52096 6.54527 6.63593 6.72656 6.75372 7.02844 7.07306 7.30575 7.43871 7.59407 7.65930 7.76298 8.27901 8.30112 9.16955 9.77647 10.51132 11.32229 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019913 B = 0.006536 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.813104 B = 4283.065875 C = 4878.099910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.510 3.490 3 O -0.561 6.561 4 N -0.607 5.607 5 C 0.112 3.888 6 C -0.134 4.134 7 C -0.103 4.103 8 C -0.104 4.104 9 H 0.068 0.932 10 C 0.167 3.833 11 H 0.032 0.968 12 C -0.129 4.129 13 C -0.149 4.149 14 C 0.175 3.825 15 N -0.587 5.587 16 C -0.231 4.231 17 H 0.068 0.932 18 C 0.005 3.995 19 N -0.910 5.910 20 Si 0.902 3.098 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.107 3.893 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.051 0.949 39 H 0.033 0.967 40 H 0.254 0.746 41 H 0.070 0.930 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 6.062 -8.900 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.299 3.701 3 O -0.441 6.441 4 N -0.340 5.340 5 C -0.010 4.010 6 C -0.172 4.172 7 C -0.141 4.141 8 C -0.126 4.126 9 H 0.087 0.913 10 C 0.058 3.942 11 H 0.049 0.951 12 C -0.167 4.167 13 C -0.188 4.188 14 C 0.050 3.950 15 N -0.311 5.311 16 C -0.360 4.360 17 H 0.086 0.914 18 C -0.193 4.193 19 N -0.555 5.555 20 Si 0.732 3.268 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.210 1.210 24 C -0.016 4.016 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.088 0.912 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.687 6.502 -8.708 11.476 hybrid contribution 0.017 -0.048 1.106 1.107 sum -3.670 6.454 -7.602 10.626 Atomic orbital electron populations 1.21929 0.92208 1.04838 1.04320 1.20778 0.90595 0.83115 0.75573 1.90669 1.70919 1.31288 1.51193 1.48217 1.07536 1.06318 1.71906 1.21606 0.79553 1.01161 0.98683 1.21943 1.00477 0.96912 0.97838 1.21451 0.94049 0.95407 1.03145 1.21960 0.97096 0.96673 0.96866 0.91349 1.20920 0.95393 0.88591 0.89245 0.95072 1.22664 1.00349 0.96909 0.96739 1.22985 1.00406 0.95302 1.00088 1.21326 0.94364 0.92341 0.86964 1.44365 1.64160 1.21673 1.00858 1.18792 1.06765 1.30408 0.80062 0.91415 1.25021 0.95955 1.00475 0.97839 1.69908 1.15507 1.36319 1.33762 0.86368 0.77016 0.77697 0.85676 1.21131 1.21637 1.21040 1.22050 0.96344 0.83263 0.99932 0.89144 0.89424 0.89640 0.89828 0.92005 0.92008 0.91419 0.88407 0.93144 0.92591 0.91603 0.92542 0.92583 0.93032 0.94871 0.93608 0.91216 0.90263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.83 8.73 36.01 0.31 -1.51 16 2 C 0.51 7.61 7.80 -10.98 -0.09 7.52 16 3 O -0.56 -10.41 16.52 5.55 0.09 -10.31 16 4 N -0.61 -8.78 2.97 -172.77 -0.51 -9.29 16 5 C 0.11 1.64 6.42 -3.71 -0.02 1.62 16 6 C -0.13 -2.11 6.08 -26.62 -0.16 -2.27 16 7 C -0.10 -1.84 4.74 -26.69 -0.13 -1.96 16 8 C -0.10 -1.75 2.12 -90.50 -0.19 -1.95 16 9 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 10 C 0.17 3.05 3.05 -66.95 -0.20 2.85 16 11 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 12 C -0.13 -2.01 5.05 -24.89 -0.13 -2.14 16 13 C -0.15 -2.60 7.08 -24.58 -0.17 -2.77 16 14 C 0.17 3.92 5.35 -2.53 -0.01 3.91 16 15 N -0.59 -13.49 2.06 -162.58 -0.33 -13.83 16 16 C -0.23 -5.99 9.51 -15.06 -0.14 -6.13 16 17 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 18 C 0.01 0.14 5.46 -17.43 -0.10 0.05 16 19 N -0.91 -25.30 10.99 55.49 0.61 -24.69 16 20 Si 0.90 21.34 29.55 -169.99 -5.02 16.31 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.11 1.43 5.35 -3.71 -0.02 1.41 16 25 H 0.09 0.88 8.07 -51.93 -0.42 0.46 16 26 H 0.09 0.86 8.12 -51.93 -0.42 0.44 16 27 H 0.08 0.72 7.47 -51.93 -0.39 0.33 16 28 H 0.08 1.28 7.03 -51.93 -0.37 0.92 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.10 2.22 7.04 -51.93 -0.37 1.85 16 33 H 0.05 0.87 6.55 -51.93 -0.34 0.53 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.00 5.55 -51.93 -0.29 0.71 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.05 1.30 7.58 -51.93 -0.39 0.91 16 39 H 0.03 0.81 7.84 -51.93 -0.41 0.41 16 40 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 41 H 0.07 0.87 6.42 -51.93 -0.33 0.54 16 42 H 0.08 0.90 5.91 -51.93 -0.31 0.59 16 LS Contribution 319.02 15.07 4.81 4.81 Total: -1.00 -29.56 319.02 -8.37 -37.93 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.96 Total: 0.44 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.05 Total: -1.38 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.24 Total: -47.80 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.56 -8.37 -37.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963211564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.974 kcal (2) G-P(sol) polarization free energy of solvation -29.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds