Wall clock time and date at job start Mon Mar 30 2020 00:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21286 * 119.99964 * 2 1 4 4 N 1.34777 * 120.00216 * 179.97438 * 2 1 3 5 5 C 1.46932 * 120.63123 * 184.86186 * 4 2 1 6 6 C 1.53186 * 108.77385 * 126.41432 * 5 4 2 7 7 C 1.53034 * 109.31940 * 54.63377 * 6 5 4 8 8 C 1.53047 * 109.53589 * 298.63614 * 7 6 5 9 9 H 1.09003 * 109.49456 * 301.40687 * 8 7 6 10 10 C 1.53000 * 109.49793 * 181.31682 * 8 7 6 11 11 H 1.09000 * 109.87175 * 171.60002 * 10 8 7 12 12 C 1.54324 * 109.87928 * 292.61297 * 10 8 7 13 13 C 1.55162 * 102.94205 * 141.60880 * 12 10 8 14 14 C 1.54906 * 101.58330 * 324.50094 * 13 12 10 15 15 N 1.47019 * 109.88247 * 50.41987 * 10 8 7 16 16 C 1.36935 * 125.64807 * 61.62512 * 15 10 8 17 17 H 1.08002 * 120.00125 * 23.73270 * 16 15 10 18 18 C 1.38812 * 120.00165 * 203.73136 * 16 15 10 19 19 N 1.31618 * 119.99994 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00211 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47482 * 60.00283 * 20 18 16 22 22 H 1.48496 * 109.47341 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.47109 * 300.00298 * 20 18 16 24 24 C 1.46928 * 120.62928 * 4.87821 * 4 2 1 25 25 H 1.08998 * 109.47126 * 245.11192 * 1 2 3 26 26 H 1.09001 * 109.47220 * 5.10944 * 1 2 3 27 27 H 1.08999 * 109.46727 * 125.11390 * 1 2 3 28 28 H 1.08994 * 109.58357 * 6.62249 * 5 4 2 29 29 H 1.08997 * 109.58106 * 246.19697 * 5 4 2 30 30 H 1.09005 * 109.49463 * 294.67716 * 6 5 4 31 31 H 1.09003 * 109.49713 * 174.59062 * 6 5 4 32 32 H 1.08998 * 109.46497 * 178.61369 * 7 6 5 33 33 H 1.09000 * 109.45069 * 58.64204 * 7 6 5 34 34 H 1.08997 * 110.72024 * 259.97443 * 12 10 8 35 35 H 1.09000 * 110.72080 * 23.24683 * 12 10 8 36 36 H 1.09006 * 111.00104 * 82.57183 * 13 12 10 37 37 H 1.09002 * 111.00523 * 206.42147 * 13 12 10 38 38 H 1.08995 * 110.36910 * 155.84690 * 14 13 12 39 39 H 1.08998 * 110.36576 * 278.17178 * 14 13 12 40 40 H 0.97005 * 120.00351 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.58273 * 113.80171 * 24 4 2 42 42 H 1.09000 * 109.58780 * 353.37941 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6462 -1.1855 0.1077 6 6 4.0441 -2.1008 1.2698 7 6 3.4114 -3.4795 1.0680 8 6 1.8868 -3.3465 1.0582 9 1 1.5540 -2.9062 1.9981 10 6 1.2546 -4.7294 0.8892 11 1 0.1757 -4.6633 1.0298 12 6 1.5677 -5.2813 -0.5175 13 6 1.8139 -6.7901 -0.2521 14 6 2.5078 -6.7532 1.1324 15 7 1.8326 -5.6659 1.8641 16 6 1.7566 -5.5477 3.2262 17 1 0.9583 -4.9751 3.6749 18 6 2.7056 -6.1638 4.0304 19 7 3.6788 -6.8612 3.4836 20 14 2.6016 -6.0031 5.8885 21 1 1.3111 -6.5643 6.3625 22 1 3.7247 -6.7471 6.5134 23 1 2.6868 -4.5696 6.2670 24 6 1.4643 -2.4454 -0.1064 25 1 -0.3633 -0.4325 0.9322 26 1 -0.3634 1.0236 -0.0915 27 1 -0.3633 -0.5911 -0.8407 28 1 4.0114 -0.1760 0.2959 29 1 4.0756 -1.5648 -0.8196 30 1 3.6910 -1.6721 2.2078 31 1 5.1293 -2.1994 1.3002 32 1 3.7130 -4.1401 1.8809 33 1 3.7456 -3.8967 0.1181 34 1 0.7175 -5.1408 -1.1850 35 1 2.4620 -4.8107 -0.9262 36 1 0.8721 -7.3368 -0.2026 37 1 2.4726 -7.2174 -1.0081 38 1 2.3705 -7.7019 1.6510 39 1 3.5691 -6.5320 1.0189 40 1 4.3422 -7.2915 4.0455 41 1 1.7159 -2.9273 -1.0511 42 1 0.3900 -2.2671 -0.0595 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963211564.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:00 Heat of formation + Delta-G solvation = -39.925781 kcal Electronic energy + Delta-G solvation = -21839.644854 eV Core-core repulsion = 18818.928525 eV Total energy + Delta-G solvation = -3020.716329 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.29105 -39.73719 -37.62234 -34.55723 -33.89889 -32.79012 -31.14848 -30.34348 -28.07683 -26.43424 -25.95877 -23.86814 -22.47732 -21.90043 -20.43446 -19.54597 -18.55321 -17.96712 -16.89355 -16.66919 -16.47579 -16.18126 -15.67360 -15.49842 -14.99221 -14.56000 -14.24864 -14.10573 -13.81241 -13.61958 -13.45828 -13.15382 -12.98184 -12.90455 -12.81277 -12.69862 -12.44824 -12.03167 -11.95646 -11.80485 -11.75520 -11.51967 -11.47890 -11.10363 -10.98015 -10.73141 -10.55845 -9.58560 -8.59785 -7.84165 -5.21144 1.44430 1.45538 1.51007 1.62500 2.11276 2.51001 3.36581 3.66650 3.71442 3.88760 4.04435 4.09660 4.17711 4.31618 4.37095 4.42100 4.45404 4.48970 4.58767 4.62065 4.66958 4.80158 4.83079 4.87965 4.92395 5.00551 5.10413 5.16474 5.18697 5.28781 5.33228 5.50997 5.55014 5.61430 5.66983 5.71976 5.79351 5.87867 6.33523 6.48736 7.16944 7.18335 7.86913 8.57649 9.27697 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.019913 B = 0.006536 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.813104 B = 4283.065875 C = 4878.099910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.503 3.497 3 O -0.605 6.605 4 N -0.609 5.609 5 C 0.117 3.883 6 C -0.126 4.126 7 C -0.093 4.093 8 C -0.096 4.096 9 H 0.040 0.960 10 C 0.158 3.842 11 H 0.039 0.961 12 C -0.116 4.116 13 C -0.137 4.137 14 C 0.179 3.821 15 N -0.603 5.603 16 C -0.229 4.229 17 H 0.067 0.933 18 C -0.049 4.049 19 N -0.938 5.938 20 Si 0.956 3.044 21 H -0.279 1.279 22 H -0.297 1.297 23 H -0.283 1.283 24 C 0.116 3.884 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.074 0.926 32 H 0.041 0.959 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.009 0.991 39 H 0.002 0.998 40 H 0.245 0.755 41 H 0.092 0.908 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.148 6.972 -11.215 14.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.294 3.706 3 O -0.487 6.487 4 N -0.341 5.341 5 C -0.006 4.006 6 C -0.164 4.164 7 C -0.131 4.131 8 C -0.117 4.117 9 H 0.058 0.942 10 C 0.052 3.948 11 H 0.057 0.943 12 C -0.153 4.153 13 C -0.175 4.175 14 C 0.054 3.946 15 N -0.327 5.327 16 C -0.359 4.359 17 H 0.084 0.916 18 C -0.244 4.244 19 N -0.585 5.585 20 Si 0.785 3.215 21 H -0.205 1.205 22 H -0.224 1.224 23 H -0.209 1.209 24 C -0.006 4.006 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.134 0.866 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.028 0.972 39 H 0.020 0.980 40 H 0.054 0.946 41 H 0.110 0.890 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.736 7.417 -11.039 14.484 hybrid contribution 0.632 -0.334 1.842 1.975 sum -5.105 7.083 -9.197 12.681 Atomic orbital electron populations 1.21970 0.88504 1.06106 1.06064 1.21606 0.92388 0.82318 0.74309 1.90653 1.72177 1.32747 1.53141 1.48318 1.07398 1.06858 1.71507 1.21520 0.80321 1.00132 0.98614 1.21846 1.00806 0.96040 0.97731 1.21256 0.95279 0.95230 1.01294 1.21783 0.95876 0.96607 0.97476 0.94155 1.21166 0.95357 0.88451 0.89863 0.94284 1.22670 1.02502 0.94763 0.95381 1.22861 1.00443 0.97322 0.96896 1.21109 0.93473 0.90311 0.89690 1.44559 1.63993 1.23434 1.00748 1.19037 1.06051 1.28787 0.81990 0.91567 1.25630 0.96292 1.01245 1.01189 1.70084 1.16329 1.37793 1.34342 0.85508 0.76733 0.77361 0.81874 1.20496 1.22373 1.20903 1.22063 0.97916 0.81924 0.98732 0.88099 0.88877 0.86602 0.90768 0.90002 0.94045 0.90742 0.93975 0.92186 0.88305 0.90726 0.91801 0.90369 0.97207 0.97998 0.94599 0.88975 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 8.73 71.24 0.62 -2.24 16 2 C 0.50 13.69 7.80 87.66 0.68 14.38 16 3 O -0.60 -21.69 16.52 -3.05 -0.05 -21.74 16 4 N -0.61 -15.90 2.97 -818.92 -2.43 -18.34 16 5 C 0.12 3.22 6.42 86.36 0.55 3.78 16 6 C -0.13 -3.97 6.08 30.67 0.19 -3.79 16 7 C -0.09 -3.30 4.74 30.62 0.15 -3.15 16 8 C -0.10 -3.07 2.12 -10.72 -0.02 -3.09 16 9 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 10 C 0.16 5.46 3.05 45.34 0.14 5.59 16 11 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 12 C -0.12 -3.12 5.05 31.78 0.16 -2.96 16 13 C -0.14 -4.42 7.08 31.99 0.23 -4.20 16 14 C 0.18 8.21 5.35 86.85 0.46 8.67 16 15 N -0.60 -28.00 2.06 -668.27 -1.38 -29.38 16 16 C -0.23 -12.12 9.51 84.03 0.80 -11.32 16 17 H 0.07 3.45 7.83 -2.91 -0.02 3.43 16 18 C -0.05 -2.69 5.46 84.86 0.46 -2.23 16 19 N -0.94 -54.81 10.99 21.65 0.24 -54.57 16 20 Si 0.96 45.24 29.55 68.60 2.03 47.27 16 21 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 22 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 24 C 0.12 2.60 5.35 86.36 0.46 3.06 16 25 H 0.10 1.56 8.07 -2.39 -0.02 1.54 16 26 H 0.09 1.52 8.12 -2.39 -0.02 1.50 16 27 H 0.12 1.30 7.47 -2.39 -0.02 1.28 16 28 H 0.07 2.22 7.03 -2.39 -0.02 2.21 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 31 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.04 1.99 7.04 -2.39 -0.02 1.97 16 33 H 0.06 1.99 6.55 -2.39 -0.02 1.97 16 34 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 1.92 5.55 -2.39 -0.01 1.90 16 36 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 37 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.01 0.50 7.58 -2.39 -0.02 0.48 16 39 H 0.00 0.10 7.84 -2.39 -0.02 0.08 16 40 H 0.24 14.15 8.31 -92.70 -0.77 13.38 16 41 H 0.09 1.76 6.42 -2.39 -0.02 1.74 16 42 H 0.11 1.86 5.91 -2.39 -0.01 1.85 16 Total: -1.00 -68.87 319.02 4.27 -64.59 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.99 Total: 9.64 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 4.88 Total: 2.52 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -3.57 Total: -102.28 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.05 Total: -21.74 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -68.87 4.27 -64.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963211564.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.667 kcal (2) G-P(sol) polarization free energy of solvation -68.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds