Wall clock time and date at job start Mon Mar 30 2020 00:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21288 * 119.99895 * 2 1 4 4 N 1.34774 * 120.00368 * 180.02562 * 2 1 3 5 5 C 1.46930 * 120.62871 * 4.54338 * 4 2 1 6 6 C 1.53195 * 108.77523 * 233.63187 * 5 4 2 7 7 C 1.53035 * 109.31146 * 305.36514 * 6 5 4 8 8 C 1.53007 * 109.45519 * 181.38460 * 7 6 5 9 9 H 1.08998 * 109.86836 * 178.57289 * 8 7 6 10 10 C 1.54323 * 109.88252 * 299.58613 * 8 7 6 11 11 C 1.55160 * 102.93761 * 141.61015 * 10 8 7 12 12 C 1.54903 * 101.58437 * 324.49761 * 11 10 8 13 13 N 1.47022 * 109.88038 * 57.55763 * 8 7 6 14 14 C 1.36939 * 125.64990 * 61.61222 * 13 8 7 15 15 H 1.08002 * 119.99682 * 6.09033 * 14 13 8 16 16 C 1.38811 * 120.00037 * 186.10448 * 14 13 8 17 17 N 1.31624 * 119.99776 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99870 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47525 * 59.99779 * 18 16 14 20 20 H 1.48503 * 109.46962 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47278 * 299.99168 * 18 16 14 22 22 C 1.53038 * 109.53982 * 61.36787 * 7 6 5 23 23 C 1.46927 * 120.63369 * 184.57003 * 4 2 1 24 24 H 1.08995 * 109.47125 * 264.29197 * 1 2 3 25 25 H 1.08999 * 109.47535 * 24.29378 * 1 2 3 26 26 H 1.08998 * 109.47322 * 144.28968 * 1 2 3 27 27 H 1.08999 * 109.58450 * 113.84492 * 5 4 2 28 28 H 1.09005 * 109.58309 * 353.42054 * 5 4 2 29 29 H 1.08997 * 109.49555 * 185.40895 * 6 5 4 30 30 H 1.09003 * 109.49602 * 65.31931 * 6 5 4 31 31 H 1.08996 * 109.45834 * 301.35624 * 7 6 5 32 32 H 1.08998 * 110.72240 * 259.97493 * 10 8 7 33 33 H 1.08998 * 110.71969 * 23.07878 * 10 8 7 34 34 H 1.08998 * 111.00197 * 82.57440 * 11 10 8 35 35 H 1.08999 * 111.00346 * 206.42436 * 11 10 8 36 36 H 1.09001 * 110.36427 * 155.84220 * 12 11 10 37 37 H 1.08993 * 110.37147 * 278.06210 * 12 11 10 38 38 H 0.96994 * 119.99654 * 180.02562 * 17 16 14 39 39 H 1.09005 * 109.50037 * 58.58018 * 22 7 6 40 40 H 1.08994 * 109.49799 * 178.68192 * 22 7 6 41 41 H 1.09000 * 109.58304 * 246.15409 * 23 4 2 42 42 H 1.08998 * 109.58301 * 6.43249 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4638 -2.4456 -0.1012 6 6 1.8914 -3.3439 1.0637 7 6 3.4159 -3.4769 1.0671 8 6 3.8443 -4.4014 2.2086 9 1 4.9276 -4.5211 2.2016 10 6 3.3901 -3.8115 3.5603 11 6 2.9535 -5.0682 4.3587 12 6 2.3399 -5.9487 3.2418 13 7 3.1953 -5.7123 2.0605 14 6 3.3569 -6.5681 1.0038 15 1 4.0809 -6.3449 0.2340 16 6 2.5900 -7.7222 0.9217 17 7 1.7079 -7.9942 1.8600 18 14 2.8099 -8.8891 -0.5202 19 1 4.2092 -9.3856 -0.5463 20 1 1.8803 -10.0379 -0.3735 21 1 2.5153 -8.1720 -1.7868 22 6 4.0497 -2.0978 1.2629 23 6 3.6466 -1.1853 0.1002 24 1 -0.3633 -0.1022 1.0225 25 1 -0.3634 0.9366 -0.4228 26 1 -0.3634 -0.8344 -0.5998 27 1 1.7111 -2.9298 -1.0459 28 1 0.3897 -2.2670 -0.0499 29 1 1.4403 -4.3293 0.9477 30 1 1.5627 -2.9013 2.0040 31 1 3.7459 -3.8964 0.1167 32 1 4.2177 -3.3064 4.0583 33 1 2.5514 -3.1293 3.4210 34 1 3.8130 -5.5590 4.8153 35 1 2.2063 -4.8135 5.1103 36 1 2.3717 -7.0002 3.5271 37 1 1.3139 -5.6426 3.0379 38 1 1.1723 -8.8009 1.8029 39 1 3.7006 -1.6668 2.2013 40 1 5.1348 -2.1964 1.2886 41 1 4.0719 -1.5668 -0.8281 42 1 4.0129 -0.1749 0.2818 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004293248.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:43 Heat of formation + Delta-G solvation = -17.405698 kcal Electronic energy + Delta-G solvation = -21687.509853 eV Core-core repulsion = 18667.770068 eV Total energy + Delta-G solvation = -3019.739785 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.08466 -38.36629 -36.27598 -33.13707 -32.24600 -31.15877 -29.46679 -29.32276 -27.34743 -24.71748 -23.72969 -22.93668 -21.27438 -20.08757 -19.32606 -18.15050 -17.05647 -16.51454 -15.75062 -15.31368 -15.08382 -14.63469 -13.99275 -13.91287 -13.75738 -13.40134 -13.11397 -12.69044 -12.57762 -12.16014 -12.00194 -11.86876 -11.81736 -11.46395 -11.26464 -10.99665 -10.91627 -10.79626 -10.45807 -10.19581 -10.06930 -9.84002 -9.76623 -9.62868 -9.52835 -9.41548 -8.63247 -8.46238 -6.81688 -5.70109 -3.06688 2.69585 3.16037 3.37689 3.43196 3.43729 4.47386 4.66355 5.00883 5.11156 5.15153 5.30973 5.33598 5.38595 5.43677 5.49068 5.55591 5.66540 5.71022 5.77252 5.83897 5.89055 5.93367 6.01129 6.19458 6.20256 6.30642 6.38439 6.48058 6.54070 6.60509 6.66083 6.77552 6.93687 7.01761 7.13985 7.54330 7.56436 7.61297 7.84217 8.24862 8.31557 9.21021 9.82872 10.50458 11.37918 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.021434 B = 0.005987 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.991756 B = 4675.853164 C = 5205.606225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.511 3.489 3 O -0.561 6.561 4 N -0.607 5.607 5 C 0.102 3.898 6 C -0.118 4.118 7 C -0.092 4.092 8 C 0.166 3.834 9 H 0.031 0.969 10 C -0.127 4.127 11 C -0.150 4.150 12 C 0.165 3.835 13 N -0.593 5.593 14 C -0.219 4.219 15 H 0.074 0.926 16 C -0.008 4.008 17 N -0.921 5.921 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.128 4.128 23 C 0.112 3.888 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.016 0.984 38 H 0.252 0.748 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.189 10.628 -0.572 10.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.300 3.700 3 O -0.441 6.441 4 N -0.340 5.340 5 C -0.020 4.020 6 C -0.156 4.156 7 C -0.113 4.113 8 C 0.059 3.941 9 H 0.049 0.951 10 C -0.165 4.165 11 C -0.189 4.189 12 C 0.040 3.960 13 N -0.317 5.317 14 C -0.347 4.347 15 H 0.092 0.908 16 C -0.204 4.204 17 N -0.569 5.569 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.167 4.167 23 C -0.010 4.010 24 H 0.111 0.889 25 H 0.107 0.893 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.034 0.966 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.970 10.931 -0.650 10.993 hybrid contribution 0.046 -0.775 -0.814 1.125 sum -0.924 10.156 -1.464 10.302 Atomic orbital electron populations 1.21956 0.92244 1.04657 1.04650 1.20764 0.90578 0.83129 0.75563 1.90672 1.70861 1.31282 1.51258 1.48245 1.07517 1.06350 1.71932 1.21984 0.96406 0.83353 1.00233 1.21874 0.96889 1.00442 0.96420 1.21575 0.94865 0.93662 1.01235 1.20908 0.95362 0.86212 0.91661 0.95149 1.22650 0.99990 0.97495 0.96364 1.23011 1.00057 0.97168 0.98615 1.21680 0.91486 0.99210 0.83622 1.44584 1.51967 1.14284 1.20893 1.18933 1.16375 1.00016 0.99401 0.90819 1.24751 0.98368 0.98799 0.98509 1.69888 1.26549 1.26884 1.33601 0.86260 0.77252 0.80587 0.82028 1.21298 1.21691 1.21306 1.21991 1.00599 0.96151 0.97941 1.21593 0.79525 1.01110 0.98797 0.88947 0.89342 0.89759 0.91333 0.89986 0.88568 0.92347 0.91436 0.92837 0.91705 0.92552 0.92739 0.89466 0.96592 0.93782 0.91792 0.91244 0.91893 0.89700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.77 9.39 36.00 0.34 -1.43 16 2 C 0.51 7.30 7.80 -10.99 -0.09 7.22 16 3 O -0.56 -10.04 16.53 5.55 0.09 -9.95 16 4 N -0.61 -8.44 2.97 -172.76 -0.51 -8.95 16 5 C 0.10 1.36 6.27 -3.71 -0.02 1.34 16 6 C -0.12 -1.90 4.93 -26.61 -0.13 -2.03 16 7 C -0.09 -1.54 1.91 -90.58 -0.17 -1.71 16 8 C 0.17 3.18 2.95 -66.95 -0.20 2.98 16 9 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 10 C -0.13 -2.14 5.22 -24.89 -0.13 -2.27 16 11 C -0.15 -2.77 7.08 -24.58 -0.17 -2.94 16 12 C 0.16 3.78 5.67 -2.35 -0.01 3.77 16 13 N -0.59 -13.87 2.27 -162.32 -0.37 -14.24 16 14 C -0.22 -5.67 9.89 -15.06 -0.15 -5.82 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 16 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 17 N -0.92 -25.75 10.27 55.49 0.57 -25.18 16 18 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 C -0.13 -1.80 5.09 -26.61 -0.14 -1.93 16 23 C 0.11 1.55 6.42 -3.71 -0.02 1.53 16 24 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.71 6.32 -51.93 -0.33 0.39 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.08 0.91 5.51 -51.93 -0.29 0.62 16 29 H 0.10 1.90 7.52 -51.93 -0.39 1.50 16 30 H 0.06 0.93 6.16 -51.93 -0.32 0.61 16 31 H 0.07 1.23 8.05 -51.93 -0.42 0.82 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.05 5.49 -51.93 -0.29 0.77 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 2.29 6.31 -51.93 -0.33 1.97 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 39 H 0.06 0.91 7.07 -51.93 -0.37 0.55 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.08 1.23 7.03 -51.93 -0.37 0.86 16 LS Contribution 318.02 15.07 4.79 4.79 Total: -1.00 -29.65 318.02 -8.31 -37.96 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.86 Total: 0.89 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -0.99 Total: -1.62 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.31 Total: -48.37 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.65 -8.31 -37.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004293248.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.554 kcal (2) G-P(sol) polarization free energy of solvation -29.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds