Wall clock time and date at job start Mon Mar 30 2020 00:51:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 O 1.21288 * 119.99895 * 2 1
4 4 N 1.34774 * 120.00368 * 180.02562 * 2 1 3
5 5 C 1.46930 * 120.62871 * 4.54338 * 4 2 1
6 6 C 1.53195 * 108.77523 * 233.63187 * 5 4 2
7 7 C 1.53035 * 109.31146 * 305.36514 * 6 5 4
8 8 C 1.53007 * 109.45519 * 181.38460 * 7 6 5
9 9 H 1.08998 * 109.86836 * 178.57289 * 8 7 6
10 10 C 1.54323 * 109.88252 * 299.58613 * 8 7 6
11 11 C 1.55160 * 102.93761 * 141.61015 * 10 8 7
12 12 C 1.54903 * 101.58437 * 324.49761 * 11 10 8
13 13 N 1.47022 * 109.88038 * 57.55763 * 8 7 6
14 14 C 1.36939 * 125.64990 * 61.61222 * 13 8 7
15 15 H 1.08002 * 119.99682 * 6.09033 * 14 13 8
16 16 C 1.38811 * 120.00037 * 186.10448 * 14 13 8
17 17 N 1.31624 * 119.99776 * 359.97438 * 16 14 13
18 18 Si 1.86793 * 119.99870 * 179.97438 * 16 14 13
19 19 H 1.48499 * 109.47525 * 59.99779 * 18 16 14
20 20 H 1.48503 * 109.46962 * 179.97438 * 18 16 14
21 21 H 1.48502 * 109.47278 * 299.99168 * 18 16 14
22 22 C 1.53038 * 109.53982 * 61.36787 * 7 6 5
23 23 C 1.46927 * 120.63369 * 184.57003 * 4 2 1
24 24 H 1.08995 * 109.47125 * 264.29197 * 1 2 3
25 25 H 1.08999 * 109.47535 * 24.29378 * 1 2 3
26 26 H 1.08998 * 109.47322 * 144.28968 * 1 2 3
27 27 H 1.08999 * 109.58450 * 113.84492 * 5 4 2
28 28 H 1.09005 * 109.58309 * 353.42054 * 5 4 2
29 29 H 1.08997 * 109.49555 * 185.40895 * 6 5 4
30 30 H 1.09003 * 109.49602 * 65.31931 * 6 5 4
31 31 H 1.08996 * 109.45834 * 301.35624 * 7 6 5
32 32 H 1.08998 * 110.72240 * 259.97493 * 10 8 7
33 33 H 1.08998 * 110.71969 * 23.07878 * 10 8 7
34 34 H 1.08998 * 111.00197 * 82.57440 * 11 10 8
35 35 H 1.08999 * 111.00346 * 206.42436 * 11 10 8
36 36 H 1.09001 * 110.36427 * 155.84220 * 12 11 10
37 37 H 1.08993 * 110.37147 * 278.06210 * 12 11 10
38 38 H 0.96994 * 119.99654 * 180.02562 * 17 16 14
39 39 H 1.09005 * 109.50037 * 58.58018 * 22 7 6
40 40 H 1.08994 * 109.49799 * 178.68192 * 22 7 6
41 41 H 1.09000 * 109.58304 * 246.15409 * 23 4 2
42 42 H 1.08998 * 109.58301 * 6.43249 * 23 4 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.1134 1.0504 0.0000
4 7 2.1809 -1.1671 -0.0005
5 6 1.4638 -2.4456 -0.1012
6 6 1.8914 -3.3439 1.0637
7 6 3.4159 -3.4769 1.0671
8 6 3.8443 -4.4014 2.2086
9 1 4.9276 -4.5211 2.2016
10 6 3.3901 -3.8115 3.5603
11 6 2.9535 -5.0682 4.3587
12 6 2.3399 -5.9487 3.2418
13 7 3.1953 -5.7123 2.0605
14 6 3.3569 -6.5681 1.0038
15 1 4.0809 -6.3449 0.2340
16 6 2.5900 -7.7222 0.9217
17 7 1.7079 -7.9942 1.8600
18 14 2.8099 -8.8891 -0.5202
19 1 4.2092 -9.3856 -0.5463
20 1 1.8803 -10.0379 -0.3735
21 1 2.5153 -8.1720 -1.7868
22 6 4.0497 -2.0978 1.2629
23 6 3.6466 -1.1853 0.1002
24 1 -0.3633 -0.1022 1.0225
25 1 -0.3634 0.9366 -0.4228
26 1 -0.3634 -0.8344 -0.5998
27 1 1.7111 -2.9298 -1.0459
28 1 0.3897 -2.2670 -0.0499
29 1 1.4403 -4.3293 0.9477
30 1 1.5627 -2.9013 2.0040
31 1 3.7459 -3.8964 0.1167
32 1 4.2177 -3.3064 4.0583
33 1 2.5514 -3.1293 3.4210
34 1 3.8130 -5.5590 4.8153
35 1 2.2063 -4.8135 5.1103
36 1 2.3717 -7.0002 3.5271
37 1 1.3139 -5.6426 3.0379
38 1 1.1723 -8.8009 1.8029
39 1 3.7006 -1.6668 2.2013
40 1 5.1348 -2.1964 1.2886
41 1 4.0719 -1.5668 -0.8281
42 1 4.0129 -0.1749 0.2818
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001004293248.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:51:43
Heat of formation + Delta-G solvation = -17.405698 kcal
Electronic energy + Delta-G solvation = -21687.509853 eV
Core-core repulsion = 18667.770068 eV
Total energy + Delta-G solvation = -3019.739785 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 266.174 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-40.08466 -38.36629 -36.27598 -33.13707 -32.24600 -31.15877 -29.46679 -29.32276
-27.34743 -24.71748 -23.72969 -22.93668 -21.27438 -20.08757 -19.32606 -18.15050
-17.05647 -16.51454 -15.75062 -15.31368 -15.08382 -14.63469 -13.99275 -13.91287
-13.75738 -13.40134 -13.11397 -12.69044 -12.57762 -12.16014 -12.00194 -11.86876
-11.81736 -11.46395 -11.26464 -10.99665 -10.91627 -10.79626 -10.45807 -10.19581
-10.06930 -9.84002 -9.76623 -9.62868 -9.52835 -9.41548 -8.63247 -8.46238
-6.81688 -5.70109 -3.06688 2.69585 3.16037 3.37689 3.43196 3.43729
4.47386 4.66355 5.00883 5.11156 5.15153 5.30973 5.33598 5.38595
5.43677 5.49068 5.55591 5.66540 5.71022 5.77252 5.83897 5.89055
5.93367 6.01129 6.19458 6.20256 6.30642 6.38439 6.48058 6.54070
6.60509 6.66083 6.77552 6.93687 7.01761 7.13985 7.54330 7.56436
7.61297 7.84217 8.24862 8.31557 9.21021 9.82872 10.50458 11.37918
Molecular weight = 266.17amu
Principal moments of inertia in cm(-1)
A = 0.021434 B = 0.005987 C = 0.005378
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1305.991756 B = 4675.853164 C = 5205.606225
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.511 3.489
3 O -0.561 6.561
4 N -0.607 5.607
5 C 0.102 3.898
6 C -0.118 4.118
7 C -0.092 4.092
8 C 0.166 3.834
9 H 0.031 0.969
10 C -0.127 4.127
11 C -0.150 4.150
12 C 0.165 3.835
13 N -0.593 5.593
14 C -0.219 4.219
15 H 0.074 0.926
16 C -0.008 4.008
17 N -0.921 5.921
18 Si 0.908 3.092
19 H -0.286 1.286
20 H -0.291 1.291
21 H -0.286 1.286
22 C -0.128 4.128
23 C 0.112 3.888
24 H 0.092 0.908
25 H 0.088 0.912
26 H 0.084 0.916
27 H 0.068 0.932
28 H 0.082 0.918
29 H 0.096 0.904
30 H 0.058 0.942
31 H 0.067 0.933
32 H 0.053 0.947
33 H 0.064 0.936
34 H 0.056 0.944
35 H 0.054 0.946
36 H 0.087 0.913
37 H 0.016 0.984
38 H 0.252 0.748
39 H 0.063 0.937
40 H 0.069 0.931
41 H 0.063 0.937
42 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.189 10.628 -0.572 10.709
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C 0.300 3.700
3 O -0.441 6.441
4 N -0.340 5.340
5 C -0.020 4.020
6 C -0.156 4.156
7 C -0.113 4.113
8 C 0.059 3.941
9 H 0.049 0.951
10 C -0.165 4.165
11 C -0.189 4.189
12 C 0.040 3.960
13 N -0.317 5.317
14 C -0.347 4.347
15 H 0.092 0.908
16 C -0.204 4.204
17 N -0.569 5.569
18 Si 0.739 3.261
19 H -0.213 1.213
20 H -0.217 1.217
21 H -0.213 1.213
22 C -0.167 4.167
23 C -0.010 4.010
24 H 0.111 0.889
25 H 0.107 0.893
26 H 0.102 0.898
27 H 0.087 0.913
28 H 0.100 0.900
29 H 0.114 0.886
30 H 0.077 0.923
31 H 0.086 0.914
32 H 0.072 0.928
33 H 0.083 0.917
34 H 0.074 0.926
35 H 0.073 0.927
36 H 0.105 0.895
37 H 0.034 0.966
38 H 0.062 0.938
39 H 0.082 0.918
40 H 0.088 0.912
41 H 0.081 0.919
42 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -0.970 10.931 -0.650 10.993
hybrid contribution 0.046 -0.775 -0.814 1.125
sum -0.924 10.156 -1.464 10.302
Atomic orbital electron populations
1.21956 0.92244 1.04657 1.04650 1.20764 0.90578 0.83129 0.75563
1.90672 1.70861 1.31282 1.51258 1.48245 1.07517 1.06350 1.71932
1.21984 0.96406 0.83353 1.00233 1.21874 0.96889 1.00442 0.96420
1.21575 0.94865 0.93662 1.01235 1.20908 0.95362 0.86212 0.91661
0.95149 1.22650 0.99990 0.97495 0.96364 1.23011 1.00057 0.97168
0.98615 1.21680 0.91486 0.99210 0.83622 1.44584 1.51967 1.14284
1.20893 1.18933 1.16375 1.00016 0.99401 0.90819 1.24751 0.98368
0.98799 0.98509 1.69888 1.26549 1.26884 1.33601 0.86260 0.77252
0.80587 0.82028 1.21298 1.21691 1.21306 1.21991 1.00599 0.96151
0.97941 1.21593 0.79525 1.01110 0.98797 0.88947 0.89342 0.89759
0.91333 0.89986 0.88568 0.92347 0.91436 0.92837 0.91705 0.92552
0.92739 0.89466 0.96592 0.93782 0.91792 0.91244 0.91893 0.89700
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -1.77 9.39 36.00 0.34 -1.43 16
2 C 0.51 7.30 7.80 -10.99 -0.09 7.22 16
3 O -0.56 -10.04 16.53 5.55 0.09 -9.95 16
4 N -0.61 -8.44 2.97 -172.76 -0.51 -8.95 16
5 C 0.10 1.36 6.27 -3.71 -0.02 1.34 16
6 C -0.12 -1.90 4.93 -26.61 -0.13 -2.03 16
7 C -0.09 -1.54 1.91 -90.58 -0.17 -1.71 16
8 C 0.17 3.18 2.95 -66.95 -0.20 2.98 16
9 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16
10 C -0.13 -2.14 5.22 -24.89 -0.13 -2.27 16
11 C -0.15 -2.77 7.08 -24.58 -0.17 -2.94 16
12 C 0.16 3.78 5.67 -2.35 -0.01 3.77 16
13 N -0.59 -13.87 2.27 -162.32 -0.37 -14.24 16
14 C -0.22 -5.67 9.89 -15.06 -0.15 -5.82 16
15 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16
16 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16
17 N -0.92 -25.75 10.27 55.49 0.57 -25.18 16
18 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16
19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16
20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16
22 C -0.13 -1.80 5.09 -26.61 -0.14 -1.93 16
23 C 0.11 1.55 6.42 -3.71 -0.02 1.53 16
24 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16
25 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16
26 H 0.08 0.71 6.32 -51.93 -0.33 0.39 16
27 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16
28 H 0.08 0.91 5.51 -51.93 -0.29 0.62 16
29 H 0.10 1.90 7.52 -51.93 -0.39 1.50 16
30 H 0.06 0.93 6.16 -51.93 -0.32 0.61 16
31 H 0.07 1.23 8.05 -51.93 -0.42 0.82 16
32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
33 H 0.06 1.05 5.49 -51.93 -0.29 0.77 16
34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16
35 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16
36 H 0.09 2.29 6.31 -51.93 -0.33 1.97 16
37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16
38 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16
39 H 0.06 0.91 7.07 -51.93 -0.37 0.55 16
40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16
42 H 0.08 1.23 7.03 -51.93 -0.37 0.86 16
LS Contribution 318.02 15.07 4.79 4.79
Total: -1.00 -29.65 318.02 -8.31 -37.96
By element:
Atomic # 1 Polarization: 7.75 SS G_CDS: -6.86 Total: 0.89 kcal
Atomic # 6 Polarization: -0.62 SS G_CDS: -0.99 Total: -1.62 kcal
Atomic # 7 Polarization: -48.06 SS G_CDS: -0.31 Total: -48.37 kcal
Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal
Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal
Total LS contribution 4.79 Total: 4.79 kcal
Total: -29.65 -8.31 -37.96 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001004293248.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.554 kcal
(2) G-P(sol) polarization free energy of solvation -29.654 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.100 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.959 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.406 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds