Wall clock time and date at job start Mon Mar 30 2020 00:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21281 * 119.99850 * 2 1 4 4 N 1.34776 * 119.99998 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.63097 * 354.03354 * 4 2 1 6 6 C 1.53194 * 108.89160 * 233.55427 * 5 4 2 7 7 C 1.53072 * 109.29904 * 305.58257 * 6 5 4 8 8 C 1.53002 * 109.44289 * 181.23668 * 7 6 5 9 9 H 1.09004 * 109.86980 * 61.72848 * 8 7 6 10 10 C 1.54326 * 109.88139 * 300.55722 * 8 7 6 11 11 C 1.55152 * 102.94205 * 218.39106 * 10 8 7 12 12 C 1.54906 * 101.58278 * 35.50108 * 11 10 8 13 13 N 1.47020 * 109.88279 * 182.74979 * 8 7 6 14 14 C 1.36940 * 125.64551 * 298.38933 * 13 8 7 15 15 H 1.08000 * 120.00195 * 337.18399 * 14 13 8 16 16 C 1.38810 * 119.99837 * 157.17604 * 14 13 8 17 17 N 1.31626 * 120.00041 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00127 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47122 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47286 * 120.00254 * 18 16 14 21 21 H 1.48508 * 109.46968 * 239.99992 * 18 16 14 22 22 C 1.53035 * 109.65873 * 61.15054 * 7 6 5 23 23 C 1.46931 * 120.62791 * 174.05704 * 4 2 1 24 24 H 1.09005 * 109.47069 * 174.52224 * 1 2 3 25 25 H 1.08999 * 109.47808 * 294.52510 * 1 2 3 26 26 H 1.09004 * 109.46992 * 54.52140 * 1 2 3 27 27 H 1.08993 * 109.58917 * 353.41828 * 5 4 2 28 28 H 1.08998 * 109.58420 * 113.69923 * 5 4 2 29 29 H 1.09002 * 109.49209 * 65.39130 * 6 5 4 30 30 H 1.09004 * 109.49685 * 185.48039 * 6 5 4 31 31 H 1.08998 * 109.34333 * 301.12849 * 7 6 5 32 32 H 1.09000 * 110.71696 * 336.75209 * 10 8 7 33 33 H 1.09005 * 110.71898 * 100.02239 * 10 8 7 34 34 H 1.09000 * 111.00284 * 277.43078 * 11 10 8 35 35 H 1.08999 * 111.03788 * 153.59441 * 11 10 8 36 36 H 1.08997 * 110.36951 * 204.15484 * 12 11 10 37 37 H 1.08999 * 110.46277 * 81.87497 * 12 11 10 38 38 H 0.97002 * 120.00194 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.49538 * 178.75013 * 22 7 6 40 40 H 1.08996 * 109.49971 * 58.65579 * 22 7 6 41 41 H 1.09007 * 109.58265 * 246.15614 * 23 4 2 42 42 H 1.09000 * 109.59045 * 6.43597 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4662 -2.4441 0.1325 6 6 2.0782 -3.2376 1.2912 7 6 3.5860 -3.3779 1.0676 8 6 4.1959 -4.1963 2.2074 9 1 3.7646 -5.1973 2.2168 10 6 3.9323 -3.4951 3.5566 11 6 5.2536 -3.7310 4.3349 12 6 6.3031 -3.6468 3.1987 13 7 5.6538 -4.2815 2.0373 14 6 6.3012 -4.8549 0.9755 15 1 5.7984 -5.5971 0.3733 16 6 7.6037 -4.4820 0.6733 17 7 8.2166 -3.5777 1.4075 18 14 8.4866 -5.2635 -0.7755 19 1 7.5860 -6.2436 -1.4339 20 1 8.8688 -4.2096 -1.7494 21 1 9.7073 -5.9592 -0.2945 22 6 4.2325 -1.9912 1.0330 23 6 3.6442 -1.1867 -0.1304 24 1 -0.3633 -1.0230 -0.0981 25 1 -0.3635 0.4266 0.9349 26 1 -0.3633 0.5965 -0.8369 27 1 0.4125 -2.2538 0.3362 28 1 1.5626 -3.0139 -0.7917 29 1 1.8988 -2.7100 2.2281 30 1 1.6213 -4.2262 1.3366 31 1 3.7648 -3.8856 0.1199 32 1 3.7564 -2.4294 3.4094 33 1 3.0919 -3.9579 4.0740 34 1 5.2614 -4.7159 4.8018 35 1 5.4163 -2.9484 5.0760 36 1 7.2052 -4.1930 3.4743 37 1 6.5428 -2.6067 2.9777 38 1 9.1266 -3.3168 1.1960 39 1 5.3089 -2.0950 0.8959 40 1 4.0332 -1.4732 1.9710 41 1 3.9202 -1.6552 -1.0751 42 1 4.0272 -0.1667 -0.1027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004293253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:46 Heat of formation + Delta-G solvation = -17.338511 kcal Electronic energy + Delta-G solvation = -21732.713341 eV Core-core repulsion = 18712.976469 eV Total energy + Delta-G solvation = -3019.736872 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.03994 -38.31834 -36.26284 -33.00962 -32.24247 -31.26585 -29.53393 -29.09862 -27.40431 -24.65554 -23.76125 -22.82806 -21.25127 -20.09780 -19.27792 -18.09652 -17.05672 -16.50078 -15.69303 -15.30115 -14.98794 -14.66479 -14.05657 -13.89362 -13.65825 -13.35545 -13.15322 -12.68300 -12.57313 -12.18191 -12.04939 -11.82961 -11.69433 -11.44792 -11.16532 -10.92982 -10.85945 -10.76479 -10.36118 -10.14269 -10.06099 -9.87934 -9.74417 -9.64237 -9.46397 -9.40629 -8.54140 -8.40867 -6.65877 -5.76445 -3.13949 2.73928 3.20365 3.37722 3.44672 3.46350 4.48756 4.65621 4.82494 5.09406 5.15670 5.30171 5.36201 5.44707 5.47968 5.49142 5.53870 5.74781 5.77867 5.82513 5.84090 5.93415 5.96213 6.06791 6.20630 6.28235 6.35053 6.40115 6.55771 6.61318 6.62616 6.68081 6.80397 7.06375 7.12956 7.24834 7.49367 7.60009 7.70563 7.80389 8.30594 8.32308 9.21147 9.82335 10.56114 11.36771 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020698 B = 0.006241 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.458238 B = 4485.186520 C = 5080.579173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.508 3.492 3 O -0.556 6.556 4 N -0.607 5.607 5 C 0.104 3.896 6 C -0.130 4.130 7 C -0.091 4.091 8 C 0.166 3.834 9 H 0.030 0.970 10 C -0.127 4.127 11 C -0.150 4.150 12 C 0.175 3.825 13 N -0.590 5.590 14 C -0.228 4.228 15 H 0.070 0.930 16 C 0.003 3.997 17 N -0.911 5.911 18 Si 0.902 3.098 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.291 1.291 22 C -0.116 4.116 23 C 0.109 3.891 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.032 0.968 38 H 0.252 0.748 39 H 0.099 0.901 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.823 1.556 0.253 14.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.297 3.703 3 O -0.435 6.435 4 N -0.341 5.341 5 C -0.019 4.019 6 C -0.169 4.169 7 C -0.112 4.112 8 C 0.059 3.941 9 H 0.047 0.953 10 C -0.165 4.165 11 C -0.188 4.188 12 C 0.050 3.950 13 N -0.314 5.314 14 C -0.357 4.357 15 H 0.087 0.913 16 C -0.195 4.195 17 N -0.556 5.556 18 Si 0.733 3.267 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.218 1.218 22 C -0.154 4.154 23 C -0.012 4.012 24 H 0.100 0.900 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.263 2.111 0.156 14.419 hybrid contribution 0.539 -0.488 -0.821 1.097 sum -13.724 1.623 -0.666 13.836 Atomic orbital electron populations 1.22007 0.92526 1.04342 1.04890 1.20736 0.90424 0.83327 0.75841 1.90693 1.70705 1.31223 1.50902 1.48268 1.08204 1.05939 1.71649 1.21875 0.96026 0.84461 0.99523 1.22023 0.97627 0.99537 0.97734 1.21548 0.91733 0.96682 1.01190 1.20954 0.86798 0.94826 0.91572 0.95280 1.22643 0.97094 1.00318 0.96415 1.22984 0.97349 0.99919 0.98596 1.21317 0.92787 0.97109 0.83783 1.44424 0.98538 1.67658 1.20797 1.18896 0.96288 1.15602 1.04949 0.91272 1.25015 0.98227 0.97861 0.98426 1.69938 1.12592 1.33438 1.39664 0.86207 0.79597 0.78354 0.82589 1.20457 1.21685 1.21826 1.21847 1.02642 0.94402 0.96465 1.21746 0.78121 1.01986 0.99383 0.89991 0.89080 0.89110 0.89880 0.91528 0.91738 0.91176 0.91394 0.91584 0.92859 0.92636 0.92668 0.92975 0.94976 0.93734 0.88229 0.92672 0.91794 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 10.01 36.00 0.36 -1.31 16 2 C 0.51 7.45 7.79 -10.99 -0.09 7.36 16 3 O -0.56 -10.60 16.52 5.56 0.09 -10.50 16 4 N -0.61 -8.70 2.97 -172.77 -0.51 -9.22 16 5 C 0.10 1.18 6.24 -3.71 -0.02 1.15 16 6 C -0.13 -1.68 5.10 -26.59 -0.14 -1.82 16 7 C -0.09 -1.55 1.90 -90.56 -0.17 -1.72 16 8 C 0.17 3.20 2.96 -66.95 -0.20 3.00 16 9 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 10 C -0.13 -2.16 5.21 -24.90 -0.13 -2.29 16 11 C -0.15 -2.79 7.08 -24.59 -0.17 -2.97 16 12 C 0.17 4.11 5.35 -2.53 -0.01 4.09 16 13 N -0.59 -14.07 2.23 -162.57 -0.36 -14.43 16 14 C -0.23 -6.03 9.81 -15.06 -0.15 -6.18 16 15 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 16 C 0.00 0.07 5.46 -17.43 -0.10 -0.02 16 17 N -0.91 -25.96 10.94 55.49 0.61 -25.35 16 18 Si 0.90 21.56 29.55 -169.99 -5.02 16.54 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 C -0.12 -2.13 4.94 -26.62 -0.13 -2.26 16 23 C 0.11 1.84 6.44 -3.71 -0.02 1.82 16 24 H 0.08 0.58 5.32 -51.93 -0.28 0.30 16 25 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.08 0.69 5.27 -51.93 -0.27 0.42 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.84 7.05 -51.93 -0.37 0.47 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.28 8.06 -51.93 -0.42 0.86 16 32 H 0.07 1.12 5.50 -51.93 -0.29 0.84 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 1.37 7.51 -51.93 -0.39 0.98 16 37 H 0.03 0.83 7.86 -51.93 -0.41 0.42 16 38 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.10 2.27 7.50 -51.93 -0.39 1.88 16 40 H 0.05 1.03 6.17 -51.93 -0.32 0.71 16 41 H 0.06 1.06 8.14 -51.92 -0.42 0.64 16 42 H 0.08 1.55 7.00 -51.93 -0.36 1.18 16 LS Contribution 318.49 15.07 4.80 4.80 Total: -1.00 -30.69 318.49 -8.21 -38.90 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.84 Total: 0.41 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -0.97 Total: -1.14 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.27 Total: -49.00 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.69 -8.21 -38.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004293253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.563 kcal (2) G-P(sol) polarization free energy of solvation -30.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds