Wall clock time and date at job start Mon Mar 30 2020 00:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21281 * 119.99850 * 2 1 4 4 N 1.34776 * 119.99998 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.63097 * 354.03354 * 4 2 1 6 6 C 1.53194 * 108.89160 * 233.55427 * 5 4 2 7 7 C 1.53072 * 109.29904 * 305.58257 * 6 5 4 8 8 C 1.53002 * 109.44289 * 181.23668 * 7 6 5 9 9 H 1.09004 * 109.86980 * 61.72848 * 8 7 6 10 10 C 1.54326 * 109.88139 * 300.55722 * 8 7 6 11 11 C 1.55152 * 102.94205 * 218.39106 * 10 8 7 12 12 C 1.54906 * 101.58278 * 35.50108 * 11 10 8 13 13 N 1.47020 * 109.88279 * 182.74979 * 8 7 6 14 14 C 1.36940 * 125.64551 * 298.38933 * 13 8 7 15 15 H 1.08000 * 120.00195 * 337.18399 * 14 13 8 16 16 C 1.38810 * 119.99837 * 157.17604 * 14 13 8 17 17 N 1.31626 * 120.00041 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00127 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47122 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47286 * 120.00254 * 18 16 14 21 21 H 1.48508 * 109.46968 * 239.99992 * 18 16 14 22 22 C 1.53035 * 109.65873 * 61.15054 * 7 6 5 23 23 C 1.46931 * 120.62791 * 174.05704 * 4 2 1 24 24 H 1.09005 * 109.47069 * 174.52224 * 1 2 3 25 25 H 1.08999 * 109.47808 * 294.52510 * 1 2 3 26 26 H 1.09004 * 109.46992 * 54.52140 * 1 2 3 27 27 H 1.08993 * 109.58917 * 353.41828 * 5 4 2 28 28 H 1.08998 * 109.58420 * 113.69923 * 5 4 2 29 29 H 1.09002 * 109.49209 * 65.39130 * 6 5 4 30 30 H 1.09004 * 109.49685 * 185.48039 * 6 5 4 31 31 H 1.08998 * 109.34333 * 301.12849 * 7 6 5 32 32 H 1.09000 * 110.71696 * 336.75209 * 10 8 7 33 33 H 1.09005 * 110.71898 * 100.02239 * 10 8 7 34 34 H 1.09000 * 111.00284 * 277.43078 * 11 10 8 35 35 H 1.08999 * 111.03788 * 153.59441 * 11 10 8 36 36 H 1.08997 * 110.36951 * 204.15484 * 12 11 10 37 37 H 1.08999 * 110.46277 * 81.87497 * 12 11 10 38 38 H 0.97002 * 120.00194 * 180.02562 * 17 16 14 39 39 H 1.09003 * 109.49538 * 178.75013 * 22 7 6 40 40 H 1.08996 * 109.49971 * 58.65579 * 22 7 6 41 41 H 1.09007 * 109.58265 * 246.15614 * 23 4 2 42 42 H 1.09000 * 109.59045 * 6.43597 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4662 -2.4441 0.1325 6 6 2.0782 -3.2376 1.2912 7 6 3.5860 -3.3779 1.0676 8 6 4.1959 -4.1963 2.2074 9 1 3.7646 -5.1973 2.2168 10 6 3.9323 -3.4951 3.5566 11 6 5.2536 -3.7310 4.3349 12 6 6.3031 -3.6468 3.1987 13 7 5.6538 -4.2815 2.0373 14 6 6.3012 -4.8549 0.9755 15 1 5.7984 -5.5971 0.3733 16 6 7.6037 -4.4820 0.6733 17 7 8.2166 -3.5777 1.4075 18 14 8.4866 -5.2635 -0.7755 19 1 7.5860 -6.2436 -1.4339 20 1 8.8688 -4.2096 -1.7494 21 1 9.7073 -5.9592 -0.2945 22 6 4.2325 -1.9912 1.0330 23 6 3.6442 -1.1867 -0.1304 24 1 -0.3633 -1.0230 -0.0981 25 1 -0.3635 0.4266 0.9349 26 1 -0.3633 0.5965 -0.8369 27 1 0.4125 -2.2538 0.3362 28 1 1.5626 -3.0139 -0.7917 29 1 1.8988 -2.7100 2.2281 30 1 1.6213 -4.2262 1.3366 31 1 3.7648 -3.8856 0.1199 32 1 3.7564 -2.4294 3.4094 33 1 3.0919 -3.9579 4.0740 34 1 5.2614 -4.7159 4.8018 35 1 5.4163 -2.9484 5.0760 36 1 7.2052 -4.1930 3.4743 37 1 6.5428 -2.6067 2.9777 38 1 9.1266 -3.3168 1.1960 39 1 5.3089 -2.0950 0.8959 40 1 4.0332 -1.4732 1.9710 41 1 3.9202 -1.6552 -1.0751 42 1 4.0272 -0.1667 -0.1027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004293253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:46 Heat of formation + Delta-G solvation = -35.873913 kcal Electronic energy + Delta-G solvation = -21733.517096 eV Core-core repulsion = 18712.976469 eV Total energy + Delta-G solvation = -3020.540627 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.26458 -39.79333 -37.66088 -34.71380 -33.82784 -32.45021 -31.23527 -30.25528 -28.84553 -26.51618 -25.18362 -24.08376 -22.62625 -21.83185 -20.62699 -19.43199 -18.62514 -17.97608 -16.98749 -16.67184 -16.47338 -16.26729 -15.72705 -15.36699 -14.93977 -14.62227 -14.27429 -14.03233 -13.91318 -13.75448 -13.44581 -13.12864 -12.99344 -12.81538 -12.76779 -12.65835 -12.56291 -12.09504 -11.97077 -11.88748 -11.72461 -11.53462 -11.28961 -11.17611 -10.90717 -10.70023 -10.60291 -9.62867 -8.63310 -7.84971 -5.22322 1.43809 1.45227 1.54366 1.63665 2.10335 2.50703 3.35876 3.67568 3.68643 3.92567 4.01411 4.04581 4.24693 4.25983 4.28872 4.36411 4.39401 4.46841 4.60757 4.67211 4.74850 4.81078 4.82737 4.89451 4.93455 5.09016 5.10921 5.13542 5.21993 5.24882 5.29550 5.33139 5.50941 5.59911 5.67230 5.70177 5.75851 5.81531 6.32017 6.52350 7.15615 7.19159 7.84854 8.56528 9.27983 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.020698 B = 0.006241 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.458238 B = 4485.186520 C = 5080.579173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.499 3.501 3 O -0.611 6.611 4 N -0.607 5.607 5 C 0.101 3.899 6 C -0.122 4.122 7 C -0.083 4.083 8 C 0.156 3.844 9 H 0.037 0.963 10 C -0.113 4.113 11 C -0.138 4.138 12 C 0.181 3.819 13 N -0.607 5.607 14 C -0.226 4.226 15 H 0.072 0.928 16 C -0.055 4.055 17 N -0.944 5.944 18 Si 0.961 3.039 19 H -0.264 1.264 20 H -0.297 1.297 21 H -0.296 1.296 22 C -0.100 4.100 23 C 0.117 3.883 24 H 0.113 0.887 25 H 0.106 0.894 26 H 0.102 0.898 27 H 0.128 0.872 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.012 0.988 37 H -0.003 1.003 38 H 0.244 0.756 39 H 0.044 0.956 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.938 0.422 0.423 18.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.290 3.710 3 O -0.494 6.494 4 N -0.339 5.339 5 C -0.020 4.020 6 C -0.160 4.160 7 C -0.104 4.104 8 C 0.050 3.950 9 H 0.054 0.946 10 C -0.151 4.151 11 C -0.177 4.177 12 C 0.055 3.945 13 N -0.331 5.331 14 C -0.356 4.356 15 H 0.090 0.910 16 C -0.249 4.249 17 N -0.592 5.592 18 Si 0.791 3.209 19 H -0.188 1.188 20 H -0.224 1.224 21 H -0.223 1.223 22 C -0.138 4.138 23 C -0.007 4.007 24 H 0.131 0.869 25 H 0.124 0.876 26 H 0.120 0.880 27 H 0.146 0.854 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.116 0.884 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.030 0.970 37 H 0.015 0.985 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.444 0.931 0.325 18.471 hybrid contribution 1.815 -0.153 -0.857 2.013 sum -16.629 0.779 -0.532 16.656 Atomic orbital electron populations 1.22034 0.87528 1.06758 1.06153 1.21822 0.92682 0.82256 0.74242 1.90674 1.72269 1.33179 1.53271 1.48370 1.06774 1.07559 1.71234 1.22167 0.97788 0.82640 0.99371 1.21972 0.93688 1.01582 0.98780 1.21407 0.95144 0.94589 0.99229 1.21229 0.84029 0.95861 0.93851 0.94562 1.22607 0.97276 1.00445 0.94754 1.22868 0.96322 1.01252 0.97229 1.21071 0.93187 0.94326 0.85901 1.44646 1.00888 1.67237 1.20345 1.19184 0.96346 1.15023 1.05024 0.91007 1.25707 0.99347 0.98961 1.00891 1.70133 1.12366 1.35375 1.41324 0.85263 0.78413 0.77495 0.79757 1.18802 1.22401 1.22301 1.21584 0.99510 0.95944 0.96810 1.21399 0.80663 1.00140 0.98468 0.86863 0.87599 0.87995 0.85390 0.90590 0.91005 0.88415 0.93424 0.91567 0.88898 0.91634 0.90738 0.96959 0.98540 0.94659 0.93731 0.93138 0.92097 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.36 10.01 71.23 0.71 -1.65 16 2 C 0.50 13.59 7.79 87.66 0.68 14.27 16 3 O -0.61 -23.30 16.52 -3.03 -0.05 -23.35 16 4 N -0.61 -16.17 2.97 -818.91 -2.44 -18.61 16 5 C 0.10 1.83 6.24 86.36 0.54 2.37 16 6 C -0.12 -2.62 5.10 30.68 0.16 -2.46 16 7 C -0.08 -2.74 1.90 -10.76 -0.02 -2.76 16 8 C 0.16 5.81 2.96 45.34 0.13 5.95 16 9 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 10 C -0.11 -3.54 5.21 31.78 0.17 -3.38 16 11 C -0.14 -4.99 7.08 31.98 0.23 -4.76 16 12 C 0.18 8.84 5.35 86.85 0.46 9.31 16 13 N -0.61 -29.63 2.23 -668.27 -1.49 -31.12 16 14 C -0.23 -12.24 9.81 84.03 0.82 -11.42 16 15 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 16 C -0.05 -3.10 5.46 84.86 0.46 -2.64 16 17 N -0.94 -57.09 10.94 21.65 0.24 -56.86 16 18 Si 0.96 45.80 29.55 68.60 2.03 47.82 16 19 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 21 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 22 C -0.10 -3.80 4.94 30.67 0.15 -3.65 16 23 C 0.12 4.02 6.44 86.36 0.56 4.58 16 24 H 0.11 0.86 5.32 -2.38 -0.01 0.85 16 25 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.13 1.25 5.27 -2.39 -0.01 1.23 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.50 7.05 -2.39 -0.02 1.48 16 30 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.05 1.76 8.06 -2.39 -0.02 1.74 16 32 H 0.07 2.09 5.50 -2.39 -0.01 2.08 16 33 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.01 0.67 7.51 -2.39 -0.02 0.65 16 37 H 0.00 -0.19 7.86 -2.39 -0.02 -0.21 16 38 H 0.24 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.04 2.18 7.50 -2.39 -0.02 2.16 16 40 H 0.05 1.92 6.17 -2.39 -0.01 1.91 16 41 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 42 H 0.06 2.38 7.00 -2.39 -0.02 2.36 16 Total: -1.00 -73.35 318.49 4.34 -69.01 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.99 Total: 9.34 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 5.06 Total: 3.76 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -3.69 Total: -106.58 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.05 Total: -23.35 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -73.35 4.34 -69.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004293253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.139 kcal (2) G-P(sol) polarization free energy of solvation -73.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds