Wall clock time and date at job start Mon Mar 30 2020 01:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 120.00047 * 2 1 4 4 O 1.21284 * 120.00022 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00044 * 0.02562 * 3 2 1 6 6 C 1.53005 * 109.47337 * 179.97438 * 5 3 2 7 7 C 1.52993 * 117.49526 * 243.62290 * 6 5 3 8 8 C 1.52995 * 117.49913 * 175.00135 * 6 5 3 9 9 C 1.46497 * 119.99835 * 180.02562 * 2 1 3 10 10 C 1.53349 * 109.42224 * 60.12495 * 9 2 1 11 11 C 1.53189 * 109.15350 * 178.67121 * 10 9 2 12 12 N 1.46931 * 108.89061 * 54.57922 * 11 10 9 13 13 C 1.36938 * 120.62972 * 126.29441 * 12 11 10 14 14 H 1.08005 * 120.00173 * 331.83979 * 13 12 11 15 15 C 1.38813 * 119.99936 * 151.83343 * 13 12 11 16 16 N 1.31618 * 120.00004 * 343.08512 * 15 13 12 17 17 Si 1.86806 * 119.99953 * 163.08402 * 15 13 12 18 18 H 1.48500 * 109.46925 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46793 * 120.00276 * 17 15 13 20 20 H 1.48498 * 109.46814 * 240.00176 * 17 15 13 21 21 C 1.46927 * 118.74004 * 306.32424 * 12 11 10 22 22 C 1.53047 * 109.46203 * 299.99905 * 9 2 1 23 23 H 1.09003 * 109.47284 * 269.99630 * 1 2 3 24 24 H 1.09003 * 109.47405 * 29.99938 * 1 2 3 25 25 H 1.09006 * 109.47322 * 150.00217 * 1 2 3 26 26 H 1.09003 * 109.47036 * 300.00013 * 5 3 2 27 27 H 1.09004 * 109.47243 * 59.99681 * 5 3 2 28 28 H 1.08995 * 115.54734 * 29.32898 * 6 5 3 29 29 H 1.09000 * 117.50401 * 359.97438 * 7 6 5 30 30 H 1.08997 * 117.49934 * 145.02306 * 7 6 5 31 31 H 1.09005 * 117.49658 * 214.98078 * 8 6 5 32 32 H 1.09001 * 117.50303 * 359.97438 * 8 6 5 33 33 H 1.08997 * 109.46024 * 180.02562 * 9 2 1 34 34 H 1.09001 * 109.68292 * 58.70764 * 10 9 2 35 35 H 1.08994 * 109.47524 * 298.51588 * 10 9 2 36 36 H 1.09000 * 109.58714 * 294.72587 * 11 10 9 37 37 H 1.09003 * 109.58688 * 174.43867 * 11 10 9 38 38 H 0.96996 * 119.99787 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.58255 * 173.39566 * 21 12 11 40 40 H 1.09000 * 109.58150 * 293.67300 * 21 12 11 41 41 H 1.09000 * 109.49464 * 61.43529 * 22 9 2 42 42 H 1.09005 * 109.49328 * 301.34097 * 22 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 6 2.3803 4.5634 1.2174 8 6 1.8111 5.0507 -0.1165 9 6 2.1974 -1.2687 -0.0006 10 6 1.8285 -2.0700 -1.2550 11 6 2.6225 -3.3800 -1.2661 12 7 2.3849 -4.0910 -0.0025 13 6 1.9510 -5.3898 -0.0036 14 1 1.3614 -5.7615 -0.8287 15 6 2.2690 -6.2288 1.0556 16 7 3.2403 -5.9052 1.8827 17 14 1.3182 -7.8170 1.3071 18 1 0.2850 -7.9483 0.2486 19 1 2.2515 -8.9696 1.2328 20 1 0.6628 -7.7958 2.6394 21 6 2.6212 -3.3818 1.2624 22 6 1.8275 -2.0716 1.2488 23 1 -0.3634 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 0.7584 2.5302 -0.8892 27 1 0.7590 2.5298 0.8908 28 1 3.3367 3.4356 -0.4807 29 1 1.6723 4.3458 2.0170 30 1 3.3381 4.9746 1.5361 31 1 2.3944 5.7826 -0.6754 32 1 0.7288 5.1536 -0.1947 33 1 3.2690 -1.0694 0.0000 34 1 2.0710 -1.4900 -2.1455 35 1 0.7613 -2.2914 -1.2439 36 1 3.6856 -3.1621 -1.3685 37 1 2.2943 -3.9991 -2.1011 38 1 3.4623 -6.4913 2.6230 39 1 2.2898 -4.0012 2.0959 40 1 3.6845 -3.1664 1.3674 41 1 0.7603 -2.2928 1.2363 42 1 2.0688 -1.4908 2.1391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001005041229.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:48 Heat of formation + Delta-G solvation = 6.148418 kcal Electronic energy + Delta-G solvation = -20825.922686 eV Core-core repulsion = 17807.204283 eV Total energy + Delta-G solvation = -3018.718402 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.01245 -37.81964 -36.83275 -35.05233 -32.54480 -30.54016 -29.83477 -28.86502 -26.82641 -24.95390 -22.55961 -22.34249 -22.16351 -20.75545 -19.23991 -18.75620 -17.02692 -16.64619 -16.25416 -15.55252 -15.11107 -14.68512 -14.20533 -13.83631 -13.59418 -13.39210 -13.20906 -12.97704 -12.61872 -12.39865 -12.34572 -12.19116 -11.69323 -11.48573 -11.45041 -11.11957 -10.79602 -10.73236 -10.52495 -10.35839 -10.18819 -10.14445 -10.07114 -9.75094 -9.64800 -9.39436 -8.52878 -8.27061 -6.68310 -5.79026 -3.21875 2.80439 3.16958 3.36792 3.44492 3.46628 3.66412 4.47907 4.49173 4.57072 4.75648 4.94622 5.11693 5.28450 5.32272 5.37642 5.39287 5.44148 5.45418 5.50914 5.54426 5.69880 5.71084 5.76411 5.89838 5.92925 6.08989 6.17504 6.26875 6.35014 6.50141 6.60616 6.63586 6.77855 6.93264 6.97773 7.35402 7.59706 7.68760 7.79604 8.38051 8.44821 9.20783 9.84092 10.41271 11.29676 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.044962 B = 0.003856 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.599816 B = 7258.797800 C = 7321.595378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.610 5.610 3 C 0.511 3.489 4 O -0.543 6.543 5 C -0.109 4.109 6 C -0.139 4.139 7 C -0.178 4.178 8 C -0.183 4.183 9 C 0.144 3.856 10 C -0.138 4.138 11 C 0.147 3.853 12 N -0.593 5.593 13 C -0.253 4.253 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.902 5.902 17 Si 0.902 3.098 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.174 3.826 22 C -0.144 4.144 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.020 0.980 37 H 0.056 0.944 38 H 0.253 0.747 39 H 0.090 0.910 40 H 0.020 0.980 41 H 0.056 0.944 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.097 17.614 -3.210 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.343 5.343 3 C 0.299 3.701 4 O -0.420 6.420 5 C -0.148 4.148 6 C -0.157 4.157 7 C -0.215 4.215 8 C -0.220 4.220 9 C 0.042 3.958 10 C -0.178 4.178 11 C 0.020 3.980 12 N -0.315 5.315 13 C -0.382 4.382 14 H 0.084 0.916 15 C -0.197 4.197 16 N -0.546 5.546 17 Si 0.732 3.268 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.216 1.216 21 C 0.047 3.953 22 C -0.184 4.184 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.112 0.888 27 H 0.109 0.891 28 H 0.136 0.864 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.399 17.490 -3.077 18.876 hybrid contribution -0.618 -0.825 0.274 1.067 sum -7.018 16.664 -2.803 18.297 Atomic orbital electron populations 1.21749 0.80229 1.02972 1.01739 1.48168 1.06857 1.06477 1.72773 1.20537 0.88116 0.85314 0.76117 1.90673 1.14055 1.87249 1.50027 1.21252 0.98076 0.91629 1.03877 1.22078 1.01064 0.89449 1.03124 1.23017 1.02806 1.04114 0.91605 1.22989 1.00790 0.97243 1.00936 1.21246 0.97324 0.81025 0.96198 1.22419 1.01273 0.98073 0.96020 1.20863 0.95832 0.90946 0.90327 1.44096 1.77816 1.10203 0.99429 1.19219 1.25848 0.86542 1.06616 0.91618 1.25066 0.96940 0.97685 0.99979 1.70043 1.28244 1.38164 1.18146 0.86231 0.79512 0.83354 0.77727 1.20262 1.21722 1.21574 1.20755 0.95343 0.88729 0.90463 1.22534 1.01529 0.98885 0.95439 0.92726 0.91593 0.90502 0.88750 0.89069 0.86409 0.88903 0.88796 0.88791 0.88886 0.88756 0.92955 0.92111 0.96227 0.92502 0.93645 0.89209 0.96152 0.92487 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 9.33 59.85 0.56 1.39 16 2 N -0.61 -9.02 2.76 -173.70 -0.48 -9.50 16 3 C 0.51 7.71 7.67 -10.99 -0.08 7.63 16 4 O -0.54 -10.39 14.89 5.55 0.08 -10.31 16 5 C -0.11 -1.14 4.53 -27.88 -0.13 -1.27 16 6 C -0.14 -1.50 5.41 -90.62 -0.49 -1.99 16 7 C -0.18 -1.68 10.18 -26.74 -0.27 -1.95 16 8 C -0.18 -1.52 10.25 -26.74 -0.27 -1.79 16 9 C 0.14 2.60 2.49 -67.73 -0.17 2.43 16 10 C -0.14 -2.44 5.34 -26.45 -0.14 -2.58 16 11 C 0.15 3.13 6.50 -3.71 -0.02 3.11 16 12 N -0.59 -14.89 2.99 -172.32 -0.52 -15.41 16 13 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 14 H 0.07 1.76 7.89 -52.48 -0.41 1.35 16 15 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 16 N -0.90 -26.27 11.20 55.49 0.62 -25.65 16 17 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 C 0.17 4.19 5.30 -3.71 -0.02 4.17 16 22 C -0.14 -2.80 5.34 -26.61 -0.14 -2.94 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.07 0.53 6.44 -51.93 -0.33 0.20 16 25 H 0.08 0.87 6.46 -51.93 -0.34 0.54 16 26 H 0.09 0.80 7.40 -51.93 -0.38 0.42 16 27 H 0.09 0.82 7.84 -51.93 -0.41 0.41 16 28 H 0.12 1.53 7.30 -51.93 -0.38 1.15 16 29 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.96 6.90 -51.93 -0.36 1.60 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.04 6.73 -51.93 -0.35 0.69 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 38 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.09 2.41 6.06 -51.93 -0.31 2.09 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 1.08 7.72 -51.93 -0.40 0.68 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 329.75 15.07 4.97 4.97 Total: -1.00 -31.44 329.75 -8.79 -40.23 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.02 Total: 0.00 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.41 Total: -0.86 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.37 Total: -50.55 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.44 -8.79 -40.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005041229.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.374 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds