Wall clock time and date at job start Mon Mar 30 2020 01:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34774 * 120.00047 * 2 1 4 4 O 1.21284 * 120.00022 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00044 * 0.02562 * 3 2 1 6 6 C 1.53005 * 109.47337 * 179.97438 * 5 3 2 7 7 C 1.52993 * 117.49526 * 243.62290 * 6 5 3 8 8 C 1.52995 * 117.49913 * 175.00135 * 6 5 3 9 9 C 1.46497 * 119.99835 * 180.02562 * 2 1 3 10 10 C 1.53349 * 109.42224 * 60.12495 * 9 2 1 11 11 C 1.53189 * 109.15350 * 178.67121 * 10 9 2 12 12 N 1.46931 * 108.89061 * 54.57922 * 11 10 9 13 13 C 1.36938 * 120.62972 * 126.29441 * 12 11 10 14 14 H 1.08005 * 120.00173 * 331.83979 * 13 12 11 15 15 C 1.38813 * 119.99936 * 151.83343 * 13 12 11 16 16 N 1.31618 * 120.00004 * 343.08512 * 15 13 12 17 17 Si 1.86806 * 119.99953 * 163.08402 * 15 13 12 18 18 H 1.48500 * 109.46925 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46793 * 120.00276 * 17 15 13 20 20 H 1.48498 * 109.46814 * 240.00176 * 17 15 13 21 21 C 1.46927 * 118.74004 * 306.32424 * 12 11 10 22 22 C 1.53047 * 109.46203 * 299.99905 * 9 2 1 23 23 H 1.09003 * 109.47284 * 269.99630 * 1 2 3 24 24 H 1.09003 * 109.47405 * 29.99938 * 1 2 3 25 25 H 1.09006 * 109.47322 * 150.00217 * 1 2 3 26 26 H 1.09003 * 109.47036 * 300.00013 * 5 3 2 27 27 H 1.09004 * 109.47243 * 59.99681 * 5 3 2 28 28 H 1.08995 * 115.54734 * 29.32898 * 6 5 3 29 29 H 1.09000 * 117.50401 * 359.97438 * 7 6 5 30 30 H 1.08997 * 117.49934 * 145.02306 * 7 6 5 31 31 H 1.09005 * 117.49658 * 214.98078 * 8 6 5 32 32 H 1.09001 * 117.50303 * 359.97438 * 8 6 5 33 33 H 1.08997 * 109.46024 * 180.02562 * 9 2 1 34 34 H 1.09001 * 109.68292 * 58.70764 * 10 9 2 35 35 H 1.08994 * 109.47524 * 298.51588 * 10 9 2 36 36 H 1.09000 * 109.58714 * 294.72587 * 11 10 9 37 37 H 1.09003 * 109.58688 * 174.43867 * 11 10 9 38 38 H 0.96996 * 119.99787 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.58255 * 173.39566 * 21 12 11 40 40 H 1.09000 * 109.58150 * 293.67300 * 21 12 11 41 41 H 1.09000 * 109.49464 * 61.43529 * 22 9 2 42 42 H 1.09005 * 109.49328 * 301.34097 * 22 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 6 2.3803 4.5634 1.2174 8 6 1.8111 5.0507 -0.1165 9 6 2.1974 -1.2687 -0.0006 10 6 1.8285 -2.0700 -1.2550 11 6 2.6225 -3.3800 -1.2661 12 7 2.3849 -4.0910 -0.0025 13 6 1.9510 -5.3898 -0.0036 14 1 1.3614 -5.7615 -0.8287 15 6 2.2690 -6.2288 1.0556 16 7 3.2403 -5.9052 1.8827 17 14 1.3182 -7.8170 1.3071 18 1 0.2850 -7.9483 0.2486 19 1 2.2515 -8.9696 1.2328 20 1 0.6628 -7.7958 2.6394 21 6 2.6212 -3.3818 1.2624 22 6 1.8275 -2.0716 1.2488 23 1 -0.3634 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 0.7584 2.5302 -0.8892 27 1 0.7590 2.5298 0.8908 28 1 3.3367 3.4356 -0.4807 29 1 1.6723 4.3458 2.0170 30 1 3.3381 4.9746 1.5361 31 1 2.3944 5.7826 -0.6754 32 1 0.7288 5.1536 -0.1947 33 1 3.2690 -1.0694 0.0000 34 1 2.0710 -1.4900 -2.1455 35 1 0.7613 -2.2914 -1.2439 36 1 3.6856 -3.1621 -1.3685 37 1 2.2943 -3.9991 -2.1011 38 1 3.4623 -6.4913 2.6230 39 1 2.2898 -4.0012 2.0959 40 1 3.6845 -3.1664 1.3674 41 1 0.7603 -2.2928 1.2363 42 1 2.0688 -1.4908 2.1391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001005041229.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:47 Heat of formation + Delta-G solvation = -12.188329 kcal Electronic energy + Delta-G solvation = -20826.717827 eV Core-core repulsion = 17807.204283 eV Total energy + Delta-G solvation = -3019.513543 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22368 -39.19621 -37.87231 -36.51651 -34.32430 -32.18157 -31.52790 -30.03638 -27.89129 -26.77327 -23.97471 -23.86821 -23.19684 -21.82896 -20.74157 -19.97994 -18.76779 -17.95478 -17.41746 -16.82297 -16.66768 -16.00740 -15.50044 -15.39124 -14.98401 -14.85929 -14.53791 -14.30007 -14.09398 -13.89251 -13.37905 -13.19487 -13.14456 -13.02802 -12.64214 -12.50141 -12.33847 -12.24351 -12.12057 -11.95800 -11.89623 -11.48552 -11.35289 -11.25760 -10.92725 -10.63753 -10.58616 -9.56402 -8.73449 -7.88762 -5.35599 1.47318 1.48741 1.59942 1.67316 2.03531 2.51002 2.94281 3.27237 3.56054 3.64310 3.78969 3.89126 4.04860 4.07001 4.19303 4.29032 4.34261 4.43988 4.55428 4.60948 4.65367 4.66294 4.74508 4.82244 4.82713 4.85565 4.98224 5.03492 5.04728 5.08109 5.12587 5.27593 5.29313 5.37463 5.43711 5.62251 5.63061 5.67822 6.37131 6.50576 7.12011 7.23580 7.81862 8.35525 9.18614 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.044962 B = 0.003856 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.599816 B = 7258.797800 C = 7321.595378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.609 5.609 3 C 0.503 3.497 4 O -0.594 6.594 5 C -0.095 4.095 6 C -0.164 4.164 7 C -0.186 4.186 8 C -0.158 4.158 9 C 0.152 3.848 10 C -0.120 4.120 11 C 0.142 3.858 12 N -0.609 5.609 13 C -0.262 4.262 14 H 0.072 0.928 15 C -0.053 4.053 16 N -0.938 5.938 17 Si 0.971 3.029 18 H -0.263 1.263 19 H -0.295 1.295 20 H -0.289 1.289 21 C 0.181 3.819 22 C -0.125 4.125 23 H 0.065 0.935 24 H 0.104 0.896 25 H 0.075 0.925 26 H 0.124 0.876 27 H 0.116 0.884 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.004 0.996 37 H 0.064 0.936 38 H 0.250 0.750 39 H 0.060 0.940 40 H -0.013 1.013 41 H 0.069 0.931 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.298 19.194 -4.072 22.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.341 5.341 3 C 0.293 3.707 4 O -0.476 6.476 5 C -0.134 4.134 6 C -0.183 4.183 7 C -0.223 4.223 8 C -0.195 4.195 9 C 0.048 3.952 10 C -0.160 4.160 11 C 0.016 3.984 12 N -0.332 5.332 13 C -0.392 4.392 14 H 0.090 0.910 15 C -0.248 4.248 16 N -0.584 5.584 17 Si 0.799 3.201 18 H -0.187 1.187 19 H -0.222 1.222 20 H -0.216 1.216 21 C 0.055 3.945 22 C -0.165 4.165 23 H 0.084 0.916 24 H 0.122 0.878 25 H 0.094 0.906 26 H 0.142 0.858 27 H 0.134 0.866 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.134 0.866 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.022 0.978 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.078 0.922 40 H 0.005 0.995 41 H 0.088 0.912 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.646 19.099 -3.966 21.761 hybrid contribution 0.455 -1.284 0.512 1.455 sum -9.191 17.815 -3.455 20.342 Atomic orbital electron populations 1.22068 0.77244 1.04847 1.03110 1.48152 1.08529 1.04992 1.72404 1.21464 0.87798 0.86689 0.74714 1.90659 1.16641 1.87995 1.52256 1.21272 0.97676 0.88101 1.06316 1.22000 1.00486 0.91165 1.04616 1.23121 1.03141 1.03821 0.92214 1.23084 1.02073 0.94965 0.99330 1.20816 0.96050 0.82753 0.95554 1.22201 1.01283 0.95956 0.96539 1.21010 0.95705 0.92670 0.88994 1.44349 1.77958 1.10172 1.00746 1.19591 1.25439 0.87485 1.06674 0.91006 1.25886 0.97848 1.01115 0.99967 1.70214 1.29989 1.39479 1.18759 0.85154 0.78184 0.79038 0.77737 1.18663 1.22191 1.21585 1.20507 0.94018 0.90472 0.89524 1.22249 1.01121 0.96497 0.96631 0.91599 0.87778 0.90641 0.85781 0.86617 0.89614 0.87767 0.89422 0.88276 0.86576 0.92212 0.91047 0.90593 0.97777 0.91742 0.94108 0.92204 0.99529 0.91227 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.22 9.33 127.77 1.19 2.41 16 2 N -0.61 -16.74 2.76 -821.85 -2.27 -19.00 16 3 C 0.50 14.48 7.67 87.66 0.67 15.16 16 4 O -0.59 -23.32 14.89 -3.04 -0.05 -23.36 16 5 C -0.09 -1.67 4.53 29.85 0.14 -1.54 16 6 C -0.16 -3.28 5.41 -10.80 -0.06 -3.34 16 7 C -0.19 -3.14 10.18 30.59 0.31 -2.83 16 8 C -0.16 -2.12 10.25 30.59 0.31 -1.81 16 9 C 0.15 5.44 2.49 45.12 0.11 5.55 16 10 C -0.12 -4.08 5.34 30.77 0.16 -3.91 16 11 C 0.14 6.07 6.50 86.36 0.56 6.64 16 12 N -0.61 -31.14 2.99 -699.08 -2.09 -33.23 16 13 C -0.26 -14.40 9.58 84.03 0.81 -13.59 16 14 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 15 C -0.05 -2.98 4.92 84.86 0.42 -2.56 16 16 N -0.94 -56.52 11.20 21.65 0.24 -56.28 16 17 Si 0.97 44.68 29.59 68.60 2.03 46.71 16 18 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 C 0.18 9.11 5.30 86.36 0.46 9.57 16 22 C -0.13 -4.87 5.34 30.67 0.16 -4.71 16 23 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.10 1.08 6.44 -2.39 -0.02 1.06 16 25 H 0.07 1.40 6.46 -2.38 -0.02 1.38 16 26 H 0.12 1.47 7.40 -2.39 -0.02 1.46 16 27 H 0.12 1.53 7.84 -2.38 -0.02 1.51 16 28 H 0.09 2.28 7.30 -2.39 -0.02 2.26 16 29 H 0.10 1.51 8.03 -2.39 -0.02 1.49 16 30 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 2.58 6.90 -2.39 -0.02 2.56 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 2.39 6.73 -2.39 -0.02 2.37 16 36 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.06 2.61 7.93 -2.39 -0.02 2.59 16 38 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 39 H 0.06 3.35 6.06 -2.39 -0.01 3.34 16 40 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 41 H 0.07 2.55 7.72 -2.39 -0.02 2.53 16 42 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -71.83 329.75 4.10 -67.73 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: 0.98 Total: 12.40 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 5.25 Total: 5.04 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -4.12 Total: -108.51 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.05 Total: -23.36 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -71.83 4.10 -67.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001005041229.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.544 kcal (2) G-P(sol) polarization free energy of solvation -71.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds