Wall clock time and date at job start Mon Mar 30 2020 00:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46889 * 2 1 4 4 C 1.50703 * 109.46976 * 240.00274 * 2 1 3 5 5 O 1.21286 * 119.99513 * 240.00123 * 4 2 1 6 6 N 1.34769 * 120.00205 * 59.99505 * 4 2 1 7 7 C 1.46501 * 120.00014 * 179.97438 * 6 4 2 8 8 H 1.09004 * 112.85074 * 336.20143 * 7 6 4 9 9 C 1.53782 * 113.61142 * 107.50467 * 7 6 4 10 10 C 1.53962 * 87.11063 * 89.18830 * 9 7 6 11 11 H 1.08993 * 113.61598 * 270.84305 * 10 9 7 12 12 N 1.46501 * 113.66387 * 139.88885 * 10 9 7 13 13 C 1.36934 * 120.00051 * 107.55366 * 12 10 9 14 14 H 1.08001 * 119.99970 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99968 * 179.97438 * 13 12 10 16 16 N 1.31613 * 120.00219 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99805 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47029 * 59.99742 * 17 15 13 19 19 H 1.48494 * 109.47260 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47356 * 300.00203 * 17 15 13 21 21 C 1.53781 * 113.61619 * 205.00312 * 7 6 4 22 22 C 1.53000 * 109.47333 * 119.99977 * 2 1 3 23 23 C 1.53774 * 113.61429 * 277.49879 * 22 2 1 24 24 C 1.53782 * 87.08370 * 220.01924 * 23 22 2 25 25 C 1.53782 * 113.61556 * 179.97438 * 22 2 1 26 26 H 1.09004 * 109.47555 * 299.99982 * 1 2 3 27 27 H 1.08996 * 109.47519 * 59.99985 * 1 2 3 28 28 H 1.09002 * 109.47248 * 180.02562 * 1 2 3 29 29 H 0.97001 * 120.00013 * 0.02562 * 6 4 2 30 30 H 1.08997 * 113.61668 * 203.66381 * 9 7 6 31 31 H 1.08998 * 113.61674 * 334.48890 * 9 7 6 32 32 H 0.97002 * 119.99797 * 287.54884 * 12 10 9 33 33 H 0.97004 * 119.99679 * 179.97438 * 16 15 13 34 34 H 1.09002 * 113.61445 * 25.43587 * 21 7 6 35 35 H 1.09002 * 113.61408 * 156.25317 * 21 7 6 36 36 H 1.09002 * 112.84591 * 48.80305 * 22 2 1 37 37 H 1.08999 * 113.61724 * 334.56364 * 23 22 2 38 38 H 1.09004 * 113.61952 * 105.47051 * 23 22 2 39 39 H 1.09007 * 113.61087 * 270.88371 * 24 23 22 40 40 H 1.08996 * 113.69561 * 139.98990 * 24 23 22 41 41 H 1.08995 * 113.61638 * 254.53144 * 25 22 2 42 42 H 1.09002 * 113.61318 * 25.43348 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7066 -0.2500 -2.4546 7 6 2.1954 -0.9402 -3.6507 8 1 3.1010 -1.5181 -3.4657 9 6 1.1041 -1.7243 -4.3986 10 6 0.8304 -0.4339 -5.1925 11 1 0.0930 0.2183 -4.7249 12 7 0.5679 -0.6635 -6.6154 13 6 -0.7008 -0.5181 -7.1098 14 1 -1.5080 -0.2345 -6.4506 15 6 -0.9494 -0.7351 -8.4581 16 7 0.0343 -1.0802 -9.2615 17 14 -2.6800 -0.5360 -9.1325 18 1 -3.1442 0.8556 -8.9015 19 1 -2.6795 -0.8227 -10.5895 20 1 -3.5923 -1.4830 -8.4425 21 6 2.2848 -0.0353 -4.8909 22 6 2.0400 -0.7212 1.2492 23 6 2.0720 0.1675 2.5037 24 6 3.4108 -0.5052 2.8502 25 6 3.5738 -0.7773 1.3451 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.1492 0.5389 -2.5435 30 1 1.4930 -2.5379 -5.0109 31 1 0.2744 -2.0325 -3.7625 32 1 1.2928 -0.9185 -7.2074 33 1 -0.1396 -1.2322 -10.2036 34 1 2.4074 1.0212 -4.6526 35 1 2.9975 -0.3864 -5.6372 36 1 1.5573 -1.6856 1.4079 37 1 2.1621 1.2312 2.2831 38 1 1.2759 -0.0523 3.2151 39 1 3.3027 -1.4102 3.4481 40 1 4.1549 0.1819 3.2531 41 1 3.9897 -1.7596 1.1213 42 1 4.0746 0.0279 0.8076 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020280942.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:27 Heat of formation + Delta-G solvation = 0.804094 kcal Electronic energy + Delta-G solvation = -20246.435427 eV Core-core repulsion = 17227.485277 eV Total energy + Delta-G solvation = -3018.950149 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.40713 -38.90731 -37.50584 -34.07435 -33.36286 -32.02761 -29.79495 -26.19903 -25.52661 -25.10929 -24.76632 -23.37465 -21.99212 -20.22660 -19.57195 -18.91218 -17.27629 -16.94502 -16.01924 -15.49124 -15.13739 -15.02895 -14.66424 -14.18676 -13.74275 -13.49682 -13.04223 -12.79977 -12.64323 -12.56541 -12.36092 -12.00244 -11.86833 -11.83776 -11.60658 -11.39771 -10.89497 -10.78805 -10.70321 -10.50982 -10.30527 -10.25130 -10.23616 -9.91298 -9.56436 -9.47633 -8.90472 -8.72194 -6.99059 -5.80704 -3.09769 2.75920 3.27313 3.41485 3.46063 3.47137 4.37389 4.46690 4.48825 4.56768 4.73654 4.85095 4.99729 5.06509 5.15358 5.21085 5.24944 5.45133 5.50164 5.52409 5.55643 5.58813 5.62288 5.71536 5.77771 5.87234 5.92090 5.95202 6.06616 6.13316 6.19048 6.26203 6.33398 6.36617 6.54861 6.64723 6.71888 7.10120 7.65642 7.68081 8.37616 8.38380 9.48829 10.06448 10.40845 11.41600 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.043051 B = 0.003328 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.241515 B = 8410.533462 C = 8823.630026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 H 0.095 0.905 4 C 0.517 3.483 5 O -0.539 6.539 6 N -0.708 5.708 7 C 0.116 3.884 8 H 0.094 0.906 9 C -0.176 4.176 10 C 0.167 3.833 11 H 0.073 0.927 12 N -0.712 5.712 13 C -0.246 4.246 14 H 0.070 0.930 15 C -0.012 4.012 16 N -0.932 5.932 17 Si 0.908 3.092 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C -0.160 4.160 22 C -0.088 4.088 23 C -0.136 4.136 24 C -0.147 4.147 25 C -0.123 4.123 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.399 0.601 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.453 4.375 22.013 22.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 H 0.113 0.887 4 C 0.303 3.697 5 O -0.416 6.416 6 N -0.359 5.359 7 C 0.010 3.990 8 H 0.112 0.888 9 C -0.218 4.218 10 C 0.055 3.945 11 H 0.091 0.909 12 N -0.350 5.350 13 C -0.377 4.377 14 H 0.088 0.912 15 C -0.208 4.208 16 N -0.580 5.580 17 Si 0.739 3.261 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C -0.200 4.200 22 C -0.106 4.106 23 C -0.173 4.173 24 C -0.185 4.185 25 C -0.161 4.161 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.233 0.767 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.220 0.780 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.764 3.696 21.989 22.801 hybrid contribution -1.023 0.353 -0.776 1.332 sum 3.740 4.049 21.214 21.918 Atomic orbital electron populations 1.21758 0.92873 1.02901 1.02603 1.21374 0.97519 1.00383 0.93085 0.88738 1.20598 0.79988 0.84652 0.84459 1.90674 1.37924 1.26223 1.86746 1.45758 1.53186 1.31620 1.05295 1.21793 0.98281 0.95430 0.83473 0.88778 1.24321 0.97783 1.00660 0.99048 1.21637 0.92772 0.93626 0.86477 0.90919 1.42394 1.08518 1.81228 1.02861 1.19247 0.86519 1.39663 0.92286 0.91179 1.24769 0.97552 1.02239 0.96272 1.69648 1.30476 1.53435 1.04443 0.86263 0.84117 0.77844 0.77922 1.21221 1.21650 1.21219 1.23855 1.00955 0.98853 0.96293 1.22333 0.97021 0.98915 0.92373 1.22980 0.97821 0.99155 0.97380 1.22868 0.97564 1.00654 0.97369 1.22801 0.95763 1.02521 0.94967 0.91509 0.91957 0.92004 0.76699 0.89728 0.92506 0.78011 0.93357 0.91858 0.89137 0.88944 0.90183 0.91598 0.90398 0.91726 0.90885 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.08 37.16 0.34 -0.86 16 2 C -0.10 -0.98 2.48 -91.77 -0.23 -1.21 16 3 H 0.09 0.76 7.94 -51.93 -0.41 0.35 16 4 C 0.52 6.84 6.96 -10.99 -0.08 6.77 16 5 O -0.54 -9.06 14.44 5.55 0.08 -8.98 16 6 N -0.71 -9.10 5.16 -53.01 -0.27 -9.37 16 7 C 0.12 1.77 4.32 -67.12 -0.29 1.48 16 8 H 0.09 1.53 7.46 -51.93 -0.39 1.14 16 9 C -0.18 -3.13 7.68 -25.82 -0.20 -3.33 16 10 C 0.17 3.21 4.37 -67.02 -0.29 2.92 16 11 H 0.07 1.35 8.10 -51.93 -0.42 0.93 16 12 N -0.71 -17.64 5.40 -52.54 -0.28 -17.92 16 13 C -0.25 -6.76 9.97 -15.06 -0.15 -6.91 16 14 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 15 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 16 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 17 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 C -0.16 -2.54 7.57 -25.92 -0.20 -2.74 16 22 C -0.09 -0.84 2.72 -89.81 -0.24 -1.09 16 23 C -0.14 -1.03 7.63 -25.92 -0.20 -1.23 16 24 C -0.15 -1.19 8.08 -25.90 -0.21 -1.40 16 25 C -0.12 -1.26 6.19 -25.90 -0.16 -1.42 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.49 7.56 -51.93 -0.39 0.10 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.40 4.28 8.12 -40.82 -0.33 3.95 16 30 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.39 10.15 7.92 -40.82 -0.32 9.83 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.49 8.12 -51.93 -0.42 1.07 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.55 7.96 -51.93 -0.41 0.13 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.87 7.96 -51.93 -0.41 0.46 16 42 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 340.19 15.07 5.13 5.13 Total: -1.00 -31.30 340.19 -8.94 -40.24 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -7.29 Total: 10.49 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -2.00 Total: -9.47 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.17 Total: -54.58 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.08 Total: -8.98 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.30 -8.94 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020280942.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.048 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds