Wall clock time and date at job start Mon Mar 30 2020 00:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46889 * 2 1 4 4 C 1.50703 * 109.46976 * 240.00274 * 2 1 3 5 5 O 1.21286 * 119.99513 * 240.00123 * 4 2 1 6 6 N 1.34769 * 120.00205 * 59.99505 * 4 2 1 7 7 C 1.46501 * 120.00014 * 179.97438 * 6 4 2 8 8 H 1.09004 * 112.85074 * 336.20143 * 7 6 4 9 9 C 1.53782 * 113.61142 * 107.50467 * 7 6 4 10 10 C 1.53962 * 87.11063 * 89.18830 * 9 7 6 11 11 H 1.08993 * 113.61598 * 270.84305 * 10 9 7 12 12 N 1.46501 * 113.66387 * 139.88885 * 10 9 7 13 13 C 1.36934 * 120.00051 * 107.55366 * 12 10 9 14 14 H 1.08001 * 119.99970 * 359.97438 * 13 12 10 15 15 C 1.38811 * 119.99968 * 179.97438 * 13 12 10 16 16 N 1.31613 * 120.00219 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99805 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47029 * 59.99742 * 17 15 13 19 19 H 1.48494 * 109.47260 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47356 * 300.00203 * 17 15 13 21 21 C 1.53781 * 113.61619 * 205.00312 * 7 6 4 22 22 C 1.53000 * 109.47333 * 119.99977 * 2 1 3 23 23 C 1.53774 * 113.61429 * 277.49879 * 22 2 1 24 24 C 1.53782 * 87.08370 * 220.01924 * 23 22 2 25 25 C 1.53782 * 113.61556 * 179.97438 * 22 2 1 26 26 H 1.09004 * 109.47555 * 299.99982 * 1 2 3 27 27 H 1.08996 * 109.47519 * 59.99985 * 1 2 3 28 28 H 1.09002 * 109.47248 * 180.02562 * 1 2 3 29 29 H 0.97001 * 120.00013 * 0.02562 * 6 4 2 30 30 H 1.08997 * 113.61668 * 203.66381 * 9 7 6 31 31 H 1.08998 * 113.61674 * 334.48890 * 9 7 6 32 32 H 0.97002 * 119.99797 * 287.54884 * 12 10 9 33 33 H 0.97004 * 119.99679 * 179.97438 * 16 15 13 34 34 H 1.09002 * 113.61445 * 25.43587 * 21 7 6 35 35 H 1.09002 * 113.61408 * 156.25317 * 21 7 6 36 36 H 1.09002 * 112.84591 * 48.80305 * 22 2 1 37 37 H 1.08999 * 113.61724 * 334.56364 * 23 22 2 38 38 H 1.09004 * 113.61952 * 105.47051 * 23 22 2 39 39 H 1.09007 * 113.61087 * 270.88371 * 24 23 22 40 40 H 1.08996 * 113.69561 * 139.98990 * 24 23 22 41 41 H 1.08995 * 113.61638 * 254.53144 * 25 22 2 42 42 H 1.09002 * 113.61318 * 25.43348 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.7295 -1.6965 -1.1192 6 7 1.7066 -0.2500 -2.4546 7 6 2.1954 -0.9402 -3.6507 8 1 3.1010 -1.5181 -3.4657 9 6 1.1041 -1.7243 -4.3986 10 6 0.8304 -0.4339 -5.1925 11 1 0.0930 0.2183 -4.7249 12 7 0.5679 -0.6635 -6.6154 13 6 -0.7008 -0.5181 -7.1098 14 1 -1.5080 -0.2345 -6.4506 15 6 -0.9494 -0.7351 -8.4581 16 7 0.0343 -1.0802 -9.2615 17 14 -2.6800 -0.5360 -9.1325 18 1 -3.1442 0.8556 -8.9015 19 1 -2.6795 -0.8227 -10.5895 20 1 -3.5923 -1.4830 -8.4425 21 6 2.2848 -0.0353 -4.8909 22 6 2.0400 -0.7212 1.2492 23 6 2.0720 0.1675 2.5037 24 6 3.4108 -0.5052 2.8502 25 6 3.5738 -0.7773 1.3451 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.1492 0.5389 -2.5435 30 1 1.4930 -2.5379 -5.0109 31 1 0.2744 -2.0325 -3.7625 32 1 1.2928 -0.9185 -7.2074 33 1 -0.1396 -1.2322 -10.2036 34 1 2.4074 1.0212 -4.6526 35 1 2.9975 -0.3864 -5.6372 36 1 1.5573 -1.6856 1.4079 37 1 2.1621 1.2312 2.2831 38 1 1.2759 -0.0523 3.2151 39 1 3.3027 -1.4102 3.4481 40 1 4.1549 0.1819 3.2531 41 1 3.9897 -1.7596 1.1213 42 1 4.0746 0.0279 0.8076 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020280942.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:27 Heat of formation + Delta-G solvation = -18.888669 kcal Electronic energy + Delta-G solvation = -20247.289369 eV Core-core repulsion = 17227.485277 eV Total energy + Delta-G solvation = -3019.804092 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.45326 -40.01348 -38.63498 -35.75220 -34.55443 -33.26768 -31.62956 -26.92900 -26.58848 -26.44752 -26.18356 -24.64746 -23.40702 -21.21016 -20.41488 -20.22705 -19.15292 -18.09306 -17.19774 -16.71577 -16.31784 -16.04495 -15.81806 -15.73849 -15.28028 -14.89969 -14.24491 -13.89718 -13.53589 -13.43774 -13.36773 -13.29690 -13.22240 -13.04142 -12.77251 -12.64304 -12.49152 -12.21210 -12.13809 -11.83574 -11.73449 -11.40002 -11.28768 -11.18166 -10.94172 -10.83539 -10.52349 -9.96407 -8.99439 -7.94879 -5.23651 1.47865 1.50690 1.56741 1.70632 2.21495 2.56702 3.36455 3.58410 3.70847 3.75520 3.77868 3.85909 3.95949 4.02546 4.11431 4.31571 4.32597 4.34642 4.43757 4.45935 4.73951 4.86705 4.89890 4.90208 4.92712 4.94710 4.98025 5.07882 5.12781 5.14132 5.21178 5.23738 5.27718 5.34499 5.44874 5.50676 5.66180 5.73903 6.26970 6.64543 7.33042 7.34203 8.09669 8.32184 9.28317 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.043051 B = 0.003328 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.241515 B = 8410.533462 C = 8823.630026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.093 4.093 3 H 0.120 0.880 4 C 0.513 3.487 5 O -0.579 6.579 6 N -0.700 5.700 7 C 0.135 3.865 8 H 0.085 0.915 9 C -0.173 4.173 10 C 0.155 3.845 11 H 0.084 0.916 12 N -0.728 5.728 13 C -0.246 4.246 14 H 0.079 0.921 15 C -0.077 4.077 16 N -0.971 5.971 17 Si 0.973 3.027 18 H -0.274 1.274 19 H -0.298 1.298 20 H -0.279 1.279 21 C -0.143 4.143 22 C -0.094 4.094 23 C -0.121 4.121 24 C -0.143 4.143 25 C -0.132 4.132 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.046 0.954 29 H 0.412 0.588 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.374 0.626 33 H 0.251 0.749 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.442 6.309 24.063 25.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 H 0.137 0.863 4 C 0.301 3.699 5 O -0.458 6.458 6 N -0.351 5.351 7 C 0.028 3.972 8 H 0.104 0.896 9 C -0.215 4.215 10 C 0.045 3.955 11 H 0.102 0.898 12 N -0.365 5.365 13 C -0.377 4.377 14 H 0.097 0.903 15 C -0.269 4.269 16 N -0.621 5.621 17 Si 0.802 3.198 18 H -0.200 1.200 19 H -0.224 1.224 20 H -0.206 1.206 21 C -0.182 4.182 22 C -0.112 4.112 23 C -0.159 4.159 24 C -0.180 4.180 25 C -0.170 4.170 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.249 0.751 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.206 0.794 33 H 0.060 0.940 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.063 0.937 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.735 5.664 24.107 25.044 hybrid contribution -0.658 -0.291 -1.329 1.512 sum 3.077 5.373 22.778 23.604 Atomic orbital electron populations 1.21770 0.91605 1.02400 1.04099 1.21413 0.98367 1.00926 0.90745 0.86255 1.21362 0.79044 0.84165 0.85342 1.90668 1.39720 1.28140 1.87292 1.45675 1.53183 1.31794 1.04493 1.21447 0.96884 0.94724 0.84159 0.89640 1.24174 0.98632 0.99721 0.98982 1.21972 0.95119 0.94580 0.83852 0.89775 1.42598 1.07393 1.81607 1.04893 1.19684 0.87786 1.37752 0.92517 0.90297 1.25590 1.01268 1.03199 0.96860 1.69811 1.32472 1.55562 1.04296 0.85220 0.79776 0.78215 0.76602 1.20027 1.22404 1.20569 1.23664 0.98177 1.00343 0.96060 1.22356 0.96208 0.99021 0.93659 1.22936 0.97564 0.99416 0.95941 1.22861 0.98405 1.01091 0.95636 1.22817 0.96288 1.00928 0.96942 0.89237 0.91266 0.93516 0.75073 0.91560 0.92731 0.79439 0.94034 0.89497 0.89768 0.90478 0.88631 0.90394 0.90319 0.90632 0.93680 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.08 71.98 0.65 -1.31 16 2 C -0.09 -1.56 2.48 -11.54 -0.03 -1.59 16 3 H 0.12 1.46 7.94 -2.39 -0.02 1.44 16 4 C 0.51 12.91 6.96 87.66 0.61 13.52 16 5 O -0.58 -19.50 14.44 -3.05 -0.04 -19.54 16 6 N -0.70 -16.66 5.16 -440.03 -2.27 -18.92 16 7 C 0.13 3.98 4.32 45.52 0.20 4.17 16 8 H 0.09 2.76 7.46 -2.38 -0.02 2.74 16 9 C -0.17 -6.13 7.68 31.18 0.24 -5.89 16 10 C 0.15 5.79 4.37 45.58 0.20 5.99 16 11 H 0.08 2.96 8.10 -2.39 -0.02 2.94 16 12 N -0.73 -36.12 5.40 -320.15 -1.73 -37.85 16 13 C -0.25 -13.42 9.97 84.03 0.84 -12.58 16 14 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 15 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 16 N -0.97 -59.38 13.06 21.65 0.28 -59.09 16 17 Si 0.97 45.63 29.55 68.60 2.03 47.66 16 18 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 19 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 20 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 21 C -0.14 -4.35 7.57 31.12 0.24 -4.11 16 22 C -0.09 -1.66 2.72 -10.27 -0.03 -1.68 16 23 C -0.12 -1.46 7.63 31.12 0.24 -1.23 16 24 C -0.14 -2.04 8.08 31.13 0.25 -1.79 16 25 C -0.13 -2.63 6.19 31.13 0.19 -2.44 16 26 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.07 0.87 7.56 -2.39 -0.02 0.85 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.41 7.64 8.12 -92.71 -0.75 6.88 16 30 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.37 20.06 7.92 -92.71 -0.73 19.33 16 33 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.08 2.71 8.12 -2.39 -0.02 2.70 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.10 0.90 7.96 -2.39 -0.02 0.88 16 38 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.04 1.12 7.96 -2.39 -0.02 1.10 16 42 H 0.07 1.44 8.10 -2.39 -0.02 1.42 16 Total: -1.00 -68.24 340.19 1.85 -66.40 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: -0.49 Total: 34.21 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 4.06 Total: -12.86 kcal Atomic # 7 Polarization: -112.15 SS G_CDS: -3.72 Total: -115.87 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.04 Total: -19.54 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -68.24 1.85 -66.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020280942.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.507 kcal (2) G-P(sol) polarization free energy of solvation -68.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds