Wall clock time and date at job start Mon Mar 30 2020 00:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47124 * 2 1 4 4 C 1.50702 * 109.47007 * 119.99938 * 2 1 3 5 5 O 1.21284 * 119.99754 * 120.00458 * 4 2 1 6 6 N 1.34773 * 119.99960 * 300.00155 * 4 2 1 7 7 C 1.46500 * 120.00154 * 180.02562 * 6 4 2 8 8 H 1.09004 * 112.84602 * 336.19711 * 7 6 4 9 9 C 1.53775 * 113.61818 * 107.50008 * 7 6 4 10 10 C 1.53773 * 87.08330 * 139.98469 * 9 7 6 11 11 H 1.09004 * 113.69553 * 89.12711 * 10 9 7 12 12 N 1.46507 * 113.61780 * 220.02391 * 10 9 7 13 13 C 1.36935 * 119.99742 * 252.49787 * 12 10 9 14 14 H 1.07999 * 120.00083 * 359.97438 * 13 12 10 15 15 C 1.38817 * 119.99986 * 179.97438 * 13 12 10 16 16 N 1.31617 * 119.99464 * 0.27719 * 15 13 12 17 17 Si 1.86800 * 119.99902 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47035 * 60.00419 * 17 15 13 19 19 H 1.48503 * 109.46845 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47237 * 300.00175 * 17 15 13 21 21 C 1.53774 * 113.61535 * 205.00201 * 7 6 4 22 22 C 1.53001 * 109.47249 * 240.00185 * 2 1 3 23 23 C 1.53780 * 113.61326 * 159.13836 * 22 2 1 24 24 C 1.53958 * 87.01566 * 220.04699 * 23 22 2 25 25 C 1.53775 * 87.11309 * 25.36382 * 24 23 22 26 26 H 1.08998 * 109.46939 * 60.00481 * 1 2 3 27 27 H 1.08996 * 109.46861 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47375 * 300.00070 * 1 2 3 29 29 H 0.97001 * 120.00190 * 359.97438 * 6 4 2 30 30 H 1.09000 * 113.61439 * 25.43605 * 9 7 6 31 31 H 1.09004 * 113.61518 * 254.53439 * 9 7 6 32 32 H 0.96999 * 120.00180 * 72.48714 * 12 10 9 33 33 H 0.97001 * 120.00638 * 359.71685 * 16 15 13 34 34 H 1.09001 * 113.61424 * 105.46811 * 21 7 6 35 35 H 1.08996 * 113.61533 * 334.55847 * 21 7 6 36 36 H 1.08996 * 112.84862 * 290.33290 * 22 2 1 37 37 H 1.08998 * 113.61604 * 334.56578 * 23 22 2 38 38 H 1.08997 * 113.61616 * 105.47042 * 23 22 2 39 39 H 1.09001 * 113.53422 * 270.80924 * 24 23 22 40 40 H 1.08996 * 113.74079 * 139.94959 * 24 23 22 41 41 H 1.08999 * 113.61471 * 220.09461 * 25 24 23 42 42 H 1.08998 * 113.61473 * 89.18704 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7297 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1955 -0.9402 3.6508 8 1 2.4392 -1.9864 3.4658 9 6 3.2980 -0.1718 4.3982 10 6 2.6149 -0.6165 5.7021 11 1 2.9736 -1.5739 6.0801 12 7 2.5811 0.4251 6.7319 13 6 3.3910 0.3271 7.8316 14 1 4.0544 -0.5182 7.9401 15 6 3.3594 1.3142 8.8071 16 7 2.5470 2.3416 8.6775 17 14 4.4638 1.1801 10.3077 18 1 5.8842 1.1481 9.8756 19 1 4.2422 2.3526 11.1917 20 1 4.1435 -0.0665 11.0483 21 6 1.3127 -0.7233 4.8910 22 6 2.0401 -0.7212 -1.2493 23 6 3.4868 -0.3576 -1.6230 24 6 3.0234 -0.3618 -3.0912 25 6 1.6122 -0.0508 -2.5654 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.1493 0.5389 2.5436 30 1 3.2672 0.9054 4.2345 31 1 4.2938 -0.5934 4.2611 32 1 1.9851 1.1842 6.6345 33 1 1.9733 2.4110 7.8984 34 1 0.7056 -1.5902 5.1519 35 1 0.7391 0.2031 4.8622 36 1 1.8521 -1.7946 -1.2247 37 1 3.7963 0.6246 -1.2657 38 1 4.2081 -1.1407 -1.3895 39 1 3.1056 -1.3372 -3.5707 40 1 3.4534 0.4414 -3.6894 41 1 0.8222 -0.5868 -3.0916 42 1 1.4083 1.0153 -2.4663 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022266128.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:32 Heat of formation + Delta-G solvation = -1.542023 kcal Electronic energy + Delta-G solvation = -20129.328569 eV Core-core repulsion = 17110.276685 eV Total energy + Delta-G solvation = -3019.051885 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.38222 -38.93600 -37.66433 -34.32854 -33.49786 -32.24373 -29.55639 -26.41698 -25.46029 -25.20326 -24.59616 -23.38170 -21.82273 -20.21641 -19.62725 -19.20492 -17.47436 -16.99561 -16.31239 -15.51572 -15.29652 -15.03417 -14.70498 -14.12020 -13.79735 -13.64693 -13.28154 -12.93021 -12.80032 -12.70917 -12.36561 -12.18684 -12.01276 -11.82138 -11.42746 -11.02123 -10.87503 -10.74561 -10.63750 -10.51218 -10.49089 -10.31913 -10.29248 -9.97099 -9.53753 -9.16905 -8.93024 -8.75343 -7.07364 -6.14446 -3.14463 2.71793 3.27636 3.50879 3.54113 3.71477 4.32679 4.42329 4.45362 4.65673 4.66395 4.78146 4.94799 4.96580 5.11521 5.16550 5.23227 5.30252 5.46659 5.47319 5.48398 5.52255 5.57502 5.67959 5.73308 5.77914 5.81547 5.85945 5.95220 6.04592 6.09992 6.14362 6.21868 6.33130 6.44624 6.53922 6.69769 6.98468 7.63977 7.78444 8.32989 8.71328 9.17566 10.04002 10.18677 11.33695 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.042179 B = 0.003142 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.681479 B = 8909.529196 C = 9051.950569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.095 0.905 4 C 0.516 3.484 5 O -0.543 6.543 6 N -0.716 5.716 7 C 0.119 3.881 8 H 0.109 0.891 9 C -0.175 4.175 10 C 0.174 3.826 11 H 0.081 0.919 12 N -0.722 5.722 13 C -0.335 4.335 14 H 0.066 0.934 15 C -0.045 4.045 16 N -0.943 5.943 17 Si 1.080 2.920 18 H -0.295 1.295 19 H -0.285 1.285 20 H -0.294 1.294 21 C -0.160 4.160 22 C -0.087 4.087 23 C -0.134 4.134 24 C -0.144 4.144 25 C -0.136 4.136 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.398 0.602 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.368 0.632 33 H 0.254 0.746 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.490 -4.093 -21.543 22.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 H 0.113 0.887 4 C 0.302 3.698 5 O -0.420 6.420 6 N -0.366 5.366 7 C 0.014 3.986 8 H 0.127 0.873 9 C -0.218 4.218 10 C 0.061 3.939 11 H 0.099 0.901 12 N -0.361 5.361 13 C -0.466 4.466 14 H 0.084 0.916 15 C -0.242 4.242 16 N -0.588 5.588 17 Si 0.911 3.089 18 H -0.222 1.222 19 H -0.210 1.210 20 H -0.222 1.222 21 C -0.200 4.200 22 C -0.106 4.106 23 C -0.171 4.171 24 C -0.181 4.181 25 C -0.174 4.174 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.232 0.768 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.201 0.799 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.394 -4.237 -20.090 20.811 hybrid contribution -0.849 -0.079 -1.449 1.681 sum -4.242 -4.317 -21.539 22.373 Atomic orbital electron populations 1.21740 0.92961 1.02736 1.02543 1.21384 0.97404 1.00545 0.93181 0.88706 1.20631 0.79951 0.84563 0.84670 1.90670 1.37875 1.26579 1.86841 1.46083 1.53212 1.31580 1.05679 1.22440 0.96511 0.97585 0.82069 0.87332 1.24304 0.98027 1.00301 0.99154 1.21297 0.92421 0.93285 0.86862 0.90127 1.42364 1.48265 1.23703 1.21803 1.20117 1.18337 1.08506 0.99681 0.91572 1.25810 1.02207 0.94007 1.02179 1.70894 1.25961 1.30912 1.31067 0.83240 0.74758 0.75543 0.75387 1.22201 1.21015 1.22179 1.23869 0.98890 1.01772 0.95485 1.22339 0.96337 1.00226 0.91687 1.22933 0.96760 1.01857 0.95544 1.22836 0.96810 1.01720 0.96732 1.22962 0.97085 1.00798 0.96516 0.91418 0.92101 0.92133 0.76801 0.90444 0.92215 0.79859 0.93454 0.91475 0.90214 0.88564 0.90458 0.91135 0.90330 0.91608 0.91544 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 8.91 37.16 0.33 -0.77 16 2 C -0.10 -1.00 2.45 -91.77 -0.23 -1.23 16 3 H 0.09 0.82 7.98 -51.93 -0.41 0.41 16 4 C 0.52 6.92 7.13 -10.99 -0.08 6.84 16 5 O -0.54 -9.31 15.42 5.55 0.09 -9.22 16 6 N -0.72 -9.23 5.25 -53.02 -0.28 -9.51 16 7 C 0.12 1.81 4.24 -67.12 -0.28 1.53 16 8 H 0.11 1.75 7.46 -51.93 -0.39 1.37 16 9 C -0.18 -3.14 7.68 -25.93 -0.20 -3.34 16 10 C 0.17 3.46 4.48 -67.12 -0.30 3.15 16 11 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 12 N -0.72 -17.94 5.40 -52.63 -0.28 -18.22 16 13 C -0.34 -9.43 9.97 -15.06 -0.15 -9.58 16 14 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 15 C -0.04 -1.29 5.50 -17.43 -0.10 -1.39 16 16 N -0.94 -29.01 13.70 55.49 0.76 -28.25 16 17 Si 1.08 25.88 29.92 -169.99 -5.09 20.80 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 C -0.16 -2.54 7.58 -25.92 -0.20 -2.74 16 22 C -0.09 -0.85 2.51 -89.81 -0.23 -1.07 16 23 C -0.13 -1.33 7.54 -25.83 -0.19 -1.52 16 24 C -0.14 -1.14 8.09 -25.83 -0.21 -1.35 16 25 C -0.14 -1.02 6.75 -25.92 -0.17 -1.20 16 26 H 0.07 0.43 7.50 -51.93 -0.39 0.04 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.43 7.56 -51.93 -0.39 0.04 16 29 H 0.40 4.24 8.15 -40.82 -0.33 3.91 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.02 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.37 9.31 6.76 -40.82 -0.28 9.04 16 33 H 0.25 7.66 6.77 -40.82 -0.28 7.38 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 1.23 8.09 -51.93 -0.42 0.81 16 36 H 0.10 1.08 7.91 -51.93 -0.41 0.67 16 37 H 0.08 0.75 7.99 -51.93 -0.41 0.33 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 LS Contribution 339.16 15.07 5.11 5.11 Total: -1.00 -32.60 339.16 -8.84 -41.44 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -7.14 Total: 10.52 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -2.00 Total: -12.67 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.20 Total: -55.98 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 25.88 SS G_CDS: -5.09 Total: 20.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.60 -8.84 -41.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022266128.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.902 kcal (2) G-P(sol) polarization free energy of solvation -32.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds