Wall clock time and date at job start Mon Mar 30 2020 00:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47124 * 2 1 4 4 C 1.50702 * 109.47007 * 119.99938 * 2 1 3 5 5 O 1.21284 * 119.99754 * 120.00458 * 4 2 1 6 6 N 1.34773 * 119.99960 * 300.00155 * 4 2 1 7 7 C 1.46500 * 120.00154 * 180.02562 * 6 4 2 8 8 H 1.09004 * 112.84602 * 336.19711 * 7 6 4 9 9 C 1.53775 * 113.61818 * 107.50008 * 7 6 4 10 10 C 1.53773 * 87.08330 * 139.98469 * 9 7 6 11 11 H 1.09004 * 113.69553 * 89.12711 * 10 9 7 12 12 N 1.46507 * 113.61780 * 220.02391 * 10 9 7 13 13 C 1.36935 * 119.99742 * 252.49787 * 12 10 9 14 14 H 1.07999 * 120.00083 * 359.97438 * 13 12 10 15 15 C 1.38817 * 119.99986 * 179.97438 * 13 12 10 16 16 N 1.31617 * 119.99464 * 0.27719 * 15 13 12 17 17 Si 1.86800 * 119.99902 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47035 * 60.00419 * 17 15 13 19 19 H 1.48503 * 109.46845 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47237 * 300.00175 * 17 15 13 21 21 C 1.53774 * 113.61535 * 205.00201 * 7 6 4 22 22 C 1.53001 * 109.47249 * 240.00185 * 2 1 3 23 23 C 1.53780 * 113.61326 * 159.13836 * 22 2 1 24 24 C 1.53958 * 87.01566 * 220.04699 * 23 22 2 25 25 C 1.53775 * 87.11309 * 25.36382 * 24 23 22 26 26 H 1.08998 * 109.46939 * 60.00481 * 1 2 3 27 27 H 1.08996 * 109.46861 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47375 * 300.00070 * 1 2 3 29 29 H 0.97001 * 120.00190 * 359.97438 * 6 4 2 30 30 H 1.09000 * 113.61439 * 25.43605 * 9 7 6 31 31 H 1.09004 * 113.61518 * 254.53439 * 9 7 6 32 32 H 0.96999 * 120.00180 * 72.48714 * 12 10 9 33 33 H 0.97001 * 120.00638 * 359.71685 * 16 15 13 34 34 H 1.09001 * 113.61424 * 105.46811 * 21 7 6 35 35 H 1.08996 * 113.61533 * 334.55847 * 21 7 6 36 36 H 1.08996 * 112.84862 * 290.33290 * 22 2 1 37 37 H 1.08998 * 113.61604 * 334.56578 * 23 22 2 38 38 H 1.08997 * 113.61616 * 105.47042 * 23 22 2 39 39 H 1.09001 * 113.53422 * 270.80924 * 24 23 22 40 40 H 1.08996 * 113.74079 * 139.94959 * 24 23 22 41 41 H 1.08999 * 113.61471 * 220.09461 * 25 24 23 42 42 H 1.08998 * 113.61473 * 89.18704 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7297 -1.6965 1.1192 6 7 1.7067 -0.2500 2.4546 7 6 2.1955 -0.9402 3.6508 8 1 2.4392 -1.9864 3.4658 9 6 3.2980 -0.1718 4.3982 10 6 2.6149 -0.6165 5.7021 11 1 2.9736 -1.5739 6.0801 12 7 2.5811 0.4251 6.7319 13 6 3.3910 0.3271 7.8316 14 1 4.0544 -0.5182 7.9401 15 6 3.3594 1.3142 8.8071 16 7 2.5470 2.3416 8.6775 17 14 4.4638 1.1801 10.3077 18 1 5.8842 1.1481 9.8756 19 1 4.2422 2.3526 11.1917 20 1 4.1435 -0.0665 11.0483 21 6 1.3127 -0.7233 4.8910 22 6 2.0401 -0.7212 -1.2493 23 6 3.4868 -0.3576 -1.6230 24 6 3.0234 -0.3618 -3.0912 25 6 1.6122 -0.0508 -2.5654 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.1493 0.5389 2.5436 30 1 3.2672 0.9054 4.2345 31 1 4.2938 -0.5934 4.2611 32 1 1.9851 1.1842 6.6345 33 1 1.9733 2.4110 7.8984 34 1 0.7056 -1.5902 5.1519 35 1 0.7391 0.2031 4.8622 36 1 1.8521 -1.7946 -1.2247 37 1 3.7963 0.6246 -1.2657 38 1 4.2081 -1.1407 -1.3895 39 1 3.1056 -1.3372 -3.5707 40 1 3.4534 0.4414 -3.6894 41 1 0.8222 -0.5868 -3.0916 42 1 1.4083 1.0153 -2.4663 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022266128.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:32 Heat of formation + Delta-G solvation = -22.349732 kcal Electronic energy + Delta-G solvation = -20130.230859 eV Core-core repulsion = 17110.276685 eV Total energy + Delta-G solvation = -3019.954175 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.43198 -40.06096 -38.81797 -36.11037 -34.70817 -33.36696 -31.44654 -27.11288 -26.64980 -26.29560 -26.08270 -24.87990 -23.10108 -21.35209 -20.68455 -20.24527 -19.48795 -18.02368 -17.61553 -16.76849 -16.28822 -16.22365 -15.89387 -15.62193 -15.38477 -15.09792 -14.57229 -14.02025 -13.66963 -13.46038 -13.41308 -13.37725 -13.05354 -12.89210 -12.67889 -12.50570 -12.24083 -12.17305 -12.08588 -11.87923 -11.83205 -11.41295 -11.25225 -11.21696 -11.01783 -10.89267 -10.58823 -10.01346 -9.11732 -8.41026 -5.34950 1.58357 1.64560 1.67861 1.84279 2.20903 2.70937 3.35769 3.54082 3.59446 3.70472 3.71978 3.76050 3.83040 3.94936 4.01046 4.09381 4.19725 4.30121 4.40026 4.48215 4.65911 4.75725 4.78709 4.84056 4.85520 4.88536 4.94399 5.03062 5.03791 5.05493 5.10052 5.15523 5.28790 5.32858 5.40413 5.56516 5.61901 5.63879 6.48749 6.58801 7.07442 7.27286 7.97855 8.08916 9.10970 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.042179 B = 0.003142 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.681479 B = 8909.529196 C = 9051.950569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.096 4.096 3 H 0.112 0.888 4 C 0.512 3.488 5 O -0.584 6.584 6 N -0.708 5.708 7 C 0.138 3.862 8 H 0.103 0.897 9 C -0.169 4.169 10 C 0.153 3.847 11 H 0.074 0.926 12 N -0.735 5.735 13 C -0.337 4.337 14 H 0.065 0.935 15 C -0.103 4.103 16 N -0.974 5.974 17 Si 1.126 2.874 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.277 1.277 21 C -0.139 4.139 22 C -0.093 4.093 23 C -0.144 4.144 24 C -0.139 4.139 25 C -0.122 4.122 26 H 0.089 0.911 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.412 0.588 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.363 0.637 33 H 0.245 0.755 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.359 -3.817 -22.882 23.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.117 4.117 3 H 0.130 0.870 4 C 0.300 3.700 5 O -0.464 6.464 6 N -0.358 5.358 7 C 0.032 3.968 8 H 0.121 0.879 9 C -0.211 4.211 10 C 0.043 3.957 11 H 0.092 0.908 12 N -0.375 5.375 13 C -0.468 4.468 14 H 0.083 0.917 15 C -0.294 4.294 16 N -0.622 5.622 17 Si 0.951 3.049 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.203 1.203 21 C -0.179 4.179 22 C -0.112 4.112 23 C -0.181 4.181 24 C -0.177 4.177 25 C -0.159 4.159 26 H 0.107 0.893 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.249 0.751 30 H 0.089 0.911 31 H 0.068 0.932 32 H 0.196 0.804 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.283 -3.986 -21.485 22.268 hybrid contribution -0.541 -0.235 -1.101 1.249 sum -4.824 -4.221 -22.586 23.478 Atomic orbital electron populations 1.21755 0.91042 1.02702 1.04116 1.21424 0.98838 1.00611 0.90851 0.87013 1.21385 0.78981 0.84056 0.85588 1.90658 1.39732 1.28567 1.87416 1.45968 1.53098 1.31842 1.04911 1.22044 0.94949 0.96966 0.82883 0.87949 1.24141 0.98364 1.00116 0.98520 1.21608 0.95644 0.91890 0.86552 0.90751 1.42498 1.47994 1.24777 1.22255 1.20450 1.18003 1.07976 1.00408 0.91659 1.27178 1.03297 0.93808 1.05129 1.70994 1.27518 1.32370 1.31327 0.82643 0.73925 0.75813 0.72515 1.20605 1.21786 1.20310 1.23662 0.97258 1.02886 0.94058 1.22335 0.96387 0.99407 0.93062 1.22995 0.96505 1.01108 0.97531 1.22830 0.97134 1.02258 0.95432 1.22924 0.96951 1.01549 0.94482 0.89260 0.92942 0.91192 0.75145 0.91095 0.93160 0.80445 0.94426 0.89985 0.89276 0.90596 0.90201 0.93616 0.90319 0.90430 0.90430 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.91 71.98 0.64 -1.10 16 2 C -0.10 -1.66 2.45 -11.54 -0.03 -1.69 16 3 H 0.11 1.61 7.98 -2.39 -0.02 1.59 16 4 C 0.51 13.18 7.13 87.66 0.62 13.81 16 5 O -0.58 -20.08 15.42 -3.04 -0.05 -20.13 16 6 N -0.71 -17.08 5.25 -440.05 -2.31 -19.39 16 7 C 0.14 4.05 4.24 45.51 0.19 4.25 16 8 H 0.10 3.24 7.46 -2.38 -0.02 3.22 16 9 C -0.17 -6.02 7.68 31.12 0.24 -5.78 16 10 C 0.15 6.06 4.48 45.52 0.20 6.26 16 11 H 0.07 3.01 8.10 -2.38 -0.02 2.99 16 12 N -0.74 -36.73 5.40 -320.43 -1.73 -38.46 16 13 C -0.34 -19.02 9.97 84.04 0.84 -18.18 16 14 H 0.07 3.62 7.83 -2.91 -0.02 3.59 16 15 C -0.10 -5.97 5.50 84.86 0.47 -5.50 16 16 N -0.97 -60.58 13.70 21.65 0.30 -60.29 16 17 Si 1.13 52.03 29.92 68.60 2.05 54.08 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 20 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 21 C -0.14 -4.20 7.58 31.12 0.24 -3.97 16 22 C -0.09 -1.69 2.51 -10.27 -0.03 -1.72 16 23 C -0.14 -2.78 7.54 31.18 0.24 -2.55 16 24 C -0.14 -1.97 8.09 31.18 0.25 -1.72 16 25 C -0.12 -1.49 6.75 31.12 0.21 -1.28 16 26 H 0.09 0.78 7.50 -2.39 -0.02 0.76 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 0.76 7.56 -2.39 -0.02 0.74 16 29 H 0.41 7.77 8.15 -92.71 -0.76 7.01 16 30 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.36 18.58 6.76 -92.71 -0.63 17.96 16 33 H 0.25 15.06 6.77 -92.71 -0.63 14.43 16 34 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.09 2.57 8.09 -2.39 -0.02 2.55 16 36 H 0.08 1.69 7.91 -2.39 -0.02 1.67 16 37 H 0.08 1.47 7.99 -2.39 -0.02 1.45 16 38 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.10 0.92 8.10 -2.39 -0.02 0.90 16 Total: -1.00 -70.95 339.16 2.11 -68.84 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: -0.24 Total: 34.54 kcal Atomic # 6 Polarization: -23.27 SS G_CDS: 4.09 Total: -19.19 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -3.74 Total: -118.14 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.05 Total: -20.13 kcal Atomic # 14 Polarization: 52.03 SS G_CDS: 2.05 Total: 54.08 kcal Total: -70.95 2.11 -68.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022266128.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.490 kcal (2) G-P(sol) polarization free energy of solvation -70.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds