Wall clock time and date at job start Mon Mar 30 2020 00:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 O 1.21277 * 120.00304 * 240.00314 * 4 2 1 6 6 N 1.34778 * 119.99637 * 59.99942 * 4 2 1 7 7 C 1.46505 * 119.99943 * 180.02562 * 6 4 2 8 8 H 1.08997 * 112.84529 * 23.80258 * 7 6 4 9 9 C 1.53778 * 113.61736 * 155.00049 * 7 6 4 10 10 C 1.53777 * 87.08388 * 139.97929 * 9 7 6 11 11 H 1.09004 * 113.60884 * 89.19991 * 10 9 7 12 12 N 1.46493 * 113.61544 * 220.01744 * 10 9 7 13 13 C 1.36936 * 119.99784 * 204.99908 * 12 10 9 14 14 H 1.08002 * 120.00256 * 0.02562 * 13 12 10 15 15 C 1.38818 * 119.99844 * 180.02562 * 13 12 10 16 16 N 1.31621 * 119.99879 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99855 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46869 * 60.00178 * 17 15 13 19 19 H 1.48499 * 109.46838 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47282 * 299.99928 * 17 15 13 21 21 C 1.53779 * 87.08164 * 334.57197 * 10 9 7 22 22 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 23 23 C 1.53780 * 113.61967 * 279.14128 * 22 2 1 24 24 C 1.53950 * 87.02250 * 220.04715 * 23 22 2 25 25 C 1.53775 * 87.11093 * 25.35895 * 24 23 22 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.97000 * 120.00446 * 0.02562 * 6 4 2 30 30 H 1.09004 * 113.61526 * 254.53305 * 9 7 6 31 31 H 1.09004 * 113.61296 * 25.34419 * 9 7 6 32 32 H 0.96997 * 119.99868 * 25.00767 * 12 10 9 33 33 H 0.96995 * 119.99365 * 180.02562 * 16 15 13 34 34 H 1.09005 * 113.61399 * 270.87945 * 21 10 9 35 35 H 1.09000 * 113.61655 * 139.98140 * 21 10 9 36 36 H 1.09002 * 112.84553 * 50.33561 * 22 2 1 37 37 H 1.09010 * 113.60862 * 334.56326 * 23 22 2 38 38 H 1.08998 * 113.61547 * 105.46057 * 23 22 2 39 39 H 1.09009 * 113.53266 * 270.80788 * 24 23 22 40 40 H 1.08996 * 113.74761 * 139.94209 * 24 23 22 41 41 H 1.09004 * 113.61695 * 220.09376 * 25 24 23 42 42 H 1.09002 * 113.61848 * 89.19425 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1947 -0.9409 -3.6507 8 1 2.4376 -1.9872 -3.4655 9 6 1.3118 -0.7236 -4.8909 10 6 2.6138 -0.6179 -5.7023 11 1 2.9717 -1.5757 -6.0801 12 7 2.5806 0.4234 -6.7321 13 6 3.3903 0.3245 -7.8321 14 1 4.0530 -0.5213 -7.9405 15 6 3.3592 1.3115 -8.8077 16 7 2.5512 2.3421 -8.6758 17 14 4.4632 1.1763 -10.3086 18 1 4.1415 -0.0702 -11.0488 19 1 4.2413 2.3481 -11.1933 20 1 5.8836 1.1432 -9.8769 21 6 3.2977 -0.1735 -4.3986 22 6 2.0400 -0.7212 1.2493 23 6 2.0344 0.1559 2.5124 24 6 3.3856 -0.4898 2.8694 25 6 3.5733 -0.7442 1.3645 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.1494 0.5389 -2.5436 30 1 0.7040 -1.5901 -5.1515 31 1 0.7378 0.2026 -4.8613 32 1 1.9853 1.1829 -6.6348 33 1 2.5293 3.0315 -9.3577 34 1 3.2678 0.9038 -4.2351 35 1 4.2932 -0.5959 -4.2617 36 1 1.5766 -1.6972 1.3933 37 1 2.1025 1.2235 2.3030 38 1 1.2341 -0.0893 3.2107 39 1 3.2899 -1.4024 3.4580 40 1 4.1094 0.2095 3.2877 41 1 4.0137 -1.7151 1.1374 42 1 4.0630 0.0767 0.8406 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022266129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:35 Heat of formation + Delta-G solvation = -1.181599 kcal Electronic energy + Delta-G solvation = -20141.260624 eV Core-core repulsion = 17122.224368 eV Total energy + Delta-G solvation = -3019.036256 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.34714 -38.83118 -37.52806 -34.11559 -33.36618 -32.14622 -29.79942 -26.21112 -25.51858 -25.10835 -24.77898 -23.41203 -21.62387 -20.12352 -19.61689 -19.10782 -17.23311 -16.86878 -16.29204 -15.51151 -15.23039 -14.86453 -14.51081 -14.31269 -13.91025 -13.14226 -13.00825 -12.82694 -12.78813 -12.55525 -12.37357 -12.06114 -11.91152 -11.79291 -11.41233 -11.25513 -10.90923 -10.70781 -10.60878 -10.50182 -10.49000 -10.29203 -10.23531 -10.05744 -9.67037 -9.38019 -8.90371 -8.68645 -6.99016 -5.80747 -3.09512 2.77960 3.33682 3.42894 3.47332 3.48363 4.38607 4.48024 4.49493 4.58286 4.74945 4.85535 5.00354 5.03793 5.15431 5.24028 5.25935 5.39078 5.47916 5.52287 5.53633 5.59856 5.62639 5.72918 5.77112 5.86955 5.89784 5.97064 6.08027 6.13186 6.17460 6.25920 6.31969 6.38067 6.55273 6.62173 6.78669 7.08017 7.67852 7.71177 8.37813 8.39810 9.49147 10.05957 10.40599 11.41680 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.040254 B = 0.003189 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.415458 B = 8777.201406 C = 8946.238014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 H 0.095 0.905 4 C 0.515 3.485 5 O -0.541 6.541 6 N -0.716 5.716 7 C 0.118 3.882 8 H 0.108 0.892 9 C -0.159 4.159 10 C 0.168 3.832 11 H 0.079 0.921 12 N -0.710 5.710 13 C -0.245 4.245 14 H 0.072 0.928 15 C -0.013 4.013 16 N -0.934 5.934 17 Si 0.908 3.092 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.176 4.176 22 C -0.087 4.087 23 C -0.136 4.136 24 C -0.147 4.147 25 C -0.124 4.124 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.398 0.602 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.385 0.615 33 H 0.256 0.744 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.475 -3.780 21.258 22.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.113 0.887 4 C 0.301 3.699 5 O -0.418 6.418 6 N -0.365 5.365 7 C 0.013 3.987 8 H 0.126 0.874 9 C -0.199 4.199 10 C 0.056 3.944 11 H 0.097 0.903 12 N -0.348 5.348 13 C -0.376 4.376 14 H 0.090 0.910 15 C -0.209 4.209 16 N -0.582 5.582 17 Si 0.739 3.261 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.218 4.218 22 C -0.106 4.106 23 C -0.174 4.174 24 C -0.184 4.184 25 C -0.161 4.161 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.232 0.768 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.219 0.781 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.855 -4.522 21.139 21.958 hybrid contribution 0.124 0.752 -0.888 1.170 sum -3.731 -3.771 20.251 20.934 Atomic orbital electron populations 1.21743 0.93036 1.02667 1.02532 1.21390 0.97377 1.00546 0.93256 0.88706 1.20610 0.80019 0.84617 0.84636 1.90665 1.37822 1.26503 1.86815 1.46097 1.53210 1.31562 1.05680 1.22458 0.96667 0.97498 0.82083 0.87442 1.23857 0.98874 1.01812 0.95332 1.21353 0.92469 0.93438 0.87168 0.90272 1.42347 1.48014 1.23705 1.20761 1.19280 1.15574 1.05401 0.97329 0.91042 1.24766 0.99867 0.97155 0.99078 1.69648 1.40731 1.11964 1.35834 0.86249 0.80263 0.76868 0.82710 1.21190 1.21679 1.21191 1.24317 0.97856 1.00400 0.99219 1.22319 0.97026 0.98913 0.92313 1.23012 0.97744 0.99339 0.97279 1.22883 0.97466 1.00736 0.97328 1.22797 0.95776 1.02579 0.94997 0.92139 0.92082 0.91537 0.76795 0.91602 0.90049 0.78109 0.93401 0.90304 0.92351 0.89021 0.90166 0.91625 0.90429 0.91683 0.90907 0.90646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.07 37.16 0.34 -0.78 16 2 C -0.10 -1.01 2.46 -91.78 -0.23 -1.24 16 3 H 0.09 0.83 7.98 -51.93 -0.41 0.41 16 4 C 0.52 6.87 6.97 -10.99 -0.08 6.79 16 5 O -0.54 -9.12 14.55 5.56 0.08 -9.04 16 6 N -0.72 -9.21 5.25 -53.02 -0.28 -9.49 16 7 C 0.12 1.79 4.24 -67.12 -0.28 1.50 16 8 H 0.11 1.72 7.46 -51.93 -0.39 1.34 16 9 C -0.16 -2.51 7.58 -25.92 -0.20 -2.71 16 10 C 0.17 3.30 4.48 -67.13 -0.30 3.00 16 11 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 12 N -0.71 -17.59 5.40 -52.64 -0.28 -17.87 16 13 C -0.24 -6.76 9.97 -15.06 -0.15 -6.91 16 14 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 15 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 16 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 17 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 C -0.18 -3.11 7.68 -25.92 -0.20 -3.31 16 22 C -0.09 -0.85 2.68 -89.81 -0.24 -1.09 16 23 C -0.14 -1.06 7.63 -25.83 -0.20 -1.26 16 24 C -0.15 -1.23 8.09 -25.83 -0.21 -1.44 16 25 C -0.12 -1.33 6.29 -25.92 -0.16 -1.49 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.44 7.56 -51.93 -0.39 0.05 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.40 4.27 8.15 -40.82 -0.33 3.94 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 32 H 0.38 10.01 7.92 -40.82 -0.32 9.69 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.08 0.58 7.99 -51.92 -0.41 0.16 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.90 8.00 -51.93 -0.42 0.48 16 42 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 LS Contribution 340.53 15.07 5.13 5.13 Total: -1.00 -31.21 340.53 -8.94 -40.15 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -7.29 Total: 10.45 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -2.00 Total: -9.39 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: 0.16 Total: -54.57 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.04 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.21 -8.94 -40.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022266129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.968 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds