Wall clock time and date at job start Mon Mar 30 2020 00:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 O 1.21277 * 120.00304 * 240.00314 * 4 2 1 6 6 N 1.34778 * 119.99637 * 59.99942 * 4 2 1 7 7 C 1.46505 * 119.99943 * 180.02562 * 6 4 2 8 8 H 1.08997 * 112.84529 * 23.80258 * 7 6 4 9 9 C 1.53778 * 113.61736 * 155.00049 * 7 6 4 10 10 C 1.53777 * 87.08388 * 139.97929 * 9 7 6 11 11 H 1.09004 * 113.60884 * 89.19991 * 10 9 7 12 12 N 1.46493 * 113.61544 * 220.01744 * 10 9 7 13 13 C 1.36936 * 119.99784 * 204.99908 * 12 10 9 14 14 H 1.08002 * 120.00256 * 0.02562 * 13 12 10 15 15 C 1.38818 * 119.99844 * 180.02562 * 13 12 10 16 16 N 1.31621 * 119.99879 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99855 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46869 * 60.00178 * 17 15 13 19 19 H 1.48499 * 109.46838 * 179.97438 * 17 15 13 20 20 H 1.48492 * 109.47282 * 299.99928 * 17 15 13 21 21 C 1.53779 * 87.08164 * 334.57197 * 10 9 7 22 22 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 23 23 C 1.53780 * 113.61967 * 279.14128 * 22 2 1 24 24 C 1.53950 * 87.02250 * 220.04715 * 23 22 2 25 25 C 1.53775 * 87.11093 * 25.35895 * 24 23 22 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 0.97000 * 120.00446 * 0.02562 * 6 4 2 30 30 H 1.09004 * 113.61526 * 254.53305 * 9 7 6 31 31 H 1.09004 * 113.61296 * 25.34419 * 9 7 6 32 32 H 0.96997 * 119.99868 * 25.00767 * 12 10 9 33 33 H 0.96995 * 119.99365 * 180.02562 * 16 15 13 34 34 H 1.09005 * 113.61399 * 270.87945 * 21 10 9 35 35 H 1.09000 * 113.61655 * 139.98140 * 21 10 9 36 36 H 1.09002 * 112.84553 * 50.33561 * 22 2 1 37 37 H 1.09010 * 113.60862 * 334.56326 * 23 22 2 38 38 H 1.08998 * 113.61547 * 105.46057 * 23 22 2 39 39 H 1.09009 * 113.53266 * 270.80788 * 24 23 22 40 40 H 1.08996 * 113.74761 * 139.94209 * 24 23 22 41 41 H 1.09004 * 113.61695 * 220.09376 * 25 24 23 42 42 H 1.09002 * 113.61848 * 89.19425 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4545 7 6 2.1947 -0.9409 -3.6507 8 1 2.4376 -1.9872 -3.4655 9 6 1.3118 -0.7236 -4.8909 10 6 2.6138 -0.6179 -5.7023 11 1 2.9717 -1.5757 -6.0801 12 7 2.5806 0.4234 -6.7321 13 6 3.3903 0.3245 -7.8321 14 1 4.0530 -0.5213 -7.9405 15 6 3.3592 1.3115 -8.8077 16 7 2.5512 2.3421 -8.6758 17 14 4.4632 1.1763 -10.3086 18 1 4.1415 -0.0702 -11.0488 19 1 4.2413 2.3481 -11.1933 20 1 5.8836 1.1432 -9.8769 21 6 3.2977 -0.1735 -4.3986 22 6 2.0400 -0.7212 1.2493 23 6 2.0344 0.1559 2.5124 24 6 3.3856 -0.4898 2.8694 25 6 3.5733 -0.7442 1.3645 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.1494 0.5389 -2.5436 30 1 0.7040 -1.5901 -5.1515 31 1 0.7378 0.2026 -4.8613 32 1 1.9853 1.1829 -6.6348 33 1 2.5293 3.0315 -9.3577 34 1 3.2678 0.9038 -4.2351 35 1 4.2932 -0.5959 -4.2617 36 1 1.5766 -1.6972 1.3933 37 1 2.1025 1.2235 2.3030 38 1 1.2341 -0.0893 3.2107 39 1 3.2899 -1.4024 3.4580 40 1 4.1094 0.2095 3.2877 41 1 4.0137 -1.7151 1.1374 42 1 4.0630 0.0767 0.8406 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022266129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:21:34 Heat of formation + Delta-G solvation = -20.741644 kcal Electronic energy + Delta-G solvation = -20142.108811 eV Core-core repulsion = 17122.224368 eV Total energy + Delta-G solvation = -3019.884443 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.38340 -39.96970 -38.67311 -35.76063 -34.61519 -33.34782 -31.66241 -26.94174 -26.58491 -26.43576 -26.19269 -24.77296 -22.91358 -21.26090 -20.61338 -20.24638 -19.15675 -17.93961 -17.60111 -16.55373 -16.31011 -16.13620 -15.89763 -15.66316 -15.07367 -14.93411 -14.46670 -13.85424 -13.54307 -13.40688 -13.31092 -13.26688 -13.15389 -13.03602 -12.79517 -12.55291 -12.27466 -12.21222 -12.14010 -12.01591 -11.74734 -11.51557 -11.39679 -11.26533 -10.95186 -10.87249 -10.46943 -9.92578 -8.99359 -7.95950 -5.24053 1.47582 1.49973 1.56043 1.71832 2.27750 2.57015 3.35559 3.58489 3.70480 3.75173 3.76763 3.86004 3.96751 4.01153 4.08818 4.25195 4.30992 4.33508 4.45190 4.46717 4.74214 4.87557 4.88065 4.89212 4.89807 4.91513 4.97892 5.07328 5.12744 5.13929 5.15696 5.21661 5.32748 5.40939 5.43721 5.50926 5.65093 5.70420 6.26527 6.66268 7.33069 7.34619 8.08505 8.32389 9.26997 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.040254 B = 0.003189 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.415458 B = 8777.201406 C = 8946.238014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 H 0.111 0.889 4 C 0.511 3.489 5 O -0.580 6.580 6 N -0.708 5.708 7 C 0.136 3.864 8 H 0.102 0.898 9 C -0.139 4.139 10 C 0.149 3.851 11 H 0.077 0.923 12 N -0.723 5.723 13 C -0.248 4.248 14 H 0.075 0.925 15 C -0.074 4.074 16 N -0.968 5.968 17 Si 0.971 3.029 18 H -0.277 1.277 19 H -0.295 1.295 20 H -0.280 1.280 21 C -0.169 4.169 22 C -0.091 4.091 23 C -0.122 4.122 24 C -0.142 4.142 25 C -0.135 4.135 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.411 0.589 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.376 0.624 33 H 0.252 0.748 34 H 0.070 0.930 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.302 -3.580 22.638 23.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 H 0.129 0.871 4 C 0.299 3.701 5 O -0.460 6.460 6 N -0.359 5.359 7 C 0.031 3.969 8 H 0.120 0.880 9 C -0.179 4.179 10 C 0.039 3.961 11 H 0.095 0.905 12 N -0.361 5.361 13 C -0.380 4.380 14 H 0.093 0.907 15 C -0.266 4.266 16 N -0.618 5.618 17 Si 0.800 3.200 18 H -0.204 1.204 19 H -0.221 1.221 20 H -0.206 1.206 21 C -0.211 4.211 22 C -0.109 4.109 23 C -0.159 4.159 24 C -0.179 4.179 25 C -0.173 4.173 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.106 0.894 29 H 0.248 0.752 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.208 0.792 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.693 -4.346 22.561 23.450 hybrid contribution 0.422 0.614 -1.255 1.460 sum -4.271 -3.732 21.306 22.048 Atomic orbital electron populations 1.21750 0.91149 1.02657 1.04038 1.21425 0.98787 1.00600 0.91016 0.87116 1.21339 0.79095 0.84146 0.85515 1.90656 1.39554 1.28387 1.87361 1.45988 1.53124 1.31822 1.04966 1.22070 0.95112 0.96916 0.82851 0.87985 1.23654 0.97341 1.02809 0.94053 1.21668 0.95517 0.92151 0.86786 0.90508 1.42483 1.47651 1.24646 1.21321 1.19665 1.15282 1.05044 0.97979 0.90724 1.25541 1.01750 0.97241 1.02053 1.69792 1.42610 1.12773 1.36673 0.85244 0.78627 0.76735 0.79364 1.20352 1.22080 1.20618 1.24149 0.98248 1.00121 0.98631 1.22341 0.95918 0.99171 0.93502 1.22962 0.97556 0.99446 0.95965 1.22881 0.98265 1.01271 0.95509 1.22815 0.96584 1.00829 0.97071 0.92911 0.91208 0.89447 0.75225 0.90086 0.89371 0.79170 0.93947 0.91110 0.93154 0.89991 0.89020 0.90079 0.90012 0.90870 0.93552 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.07 71.98 0.65 -1.11 16 2 C -0.10 -1.69 2.46 -11.54 -0.03 -1.71 16 3 H 0.11 1.61 7.98 -2.39 -0.02 1.59 16 4 C 0.51 13.06 6.97 87.66 0.61 13.67 16 5 O -0.58 -19.57 14.55 -3.02 -0.04 -19.61 16 6 N -0.71 -17.11 5.25 -440.04 -2.31 -19.42 16 7 C 0.14 3.99 4.24 45.52 0.19 4.18 16 8 H 0.10 3.19 7.46 -2.39 -0.02 3.17 16 9 C -0.14 -4.19 7.58 31.12 0.24 -3.96 16 10 C 0.15 5.80 4.48 45.52 0.20 6.01 16 11 H 0.08 3.00 8.10 -2.38 -0.02 2.98 16 12 N -0.72 -35.96 5.40 -320.46 -1.73 -37.69 16 13 C -0.25 -13.74 9.97 84.04 0.84 -12.90 16 14 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 15 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 16 N -0.97 -58.58 13.06 21.65 0.28 -58.30 16 17 Si 0.97 46.01 29.55 68.60 2.03 48.04 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 21 C -0.17 -5.96 7.68 31.12 0.24 -5.72 16 22 C -0.09 -1.63 2.68 -10.27 -0.03 -1.66 16 23 C -0.12 -1.56 7.63 31.18 0.24 -1.32 16 24 C -0.14 -2.16 8.09 31.18 0.25 -1.91 16 25 C -0.14 -2.86 6.29 31.12 0.20 -2.67 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.78 7.56 -2.39 -0.02 0.76 16 28 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.41 7.87 8.15 -92.71 -0.76 7.12 16 30 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.09 2.58 8.10 -2.39 -0.02 2.56 16 32 H 0.38 19.75 7.92 -92.71 -0.73 19.01 16 33 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 34 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.81 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.09 0.99 7.99 -2.38 -0.02 0.97 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.05 1.19 8.00 -2.38 -0.02 1.18 16 42 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 Total: -1.00 -67.52 340.53 1.81 -65.71 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -0.49 Total: 34.10 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 4.07 Total: -12.83 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -3.76 Total: -115.41 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.04 Total: -19.61 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -67.52 1.81 -65.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022266129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.973 kcal (2) G-P(sol) polarization free energy of solvation -67.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds