Wall clock time and date at job start Mon Mar 30 2020 00:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21286 * 119.99751 * 2 1 4 4 N 1.34768 * 120.00103 * 180.02562 * 2 1 3 5 5 C 1.46961 * 120.65756 * 5.22145 * 4 2 1 6 6 C 1.53187 * 108.88916 * 233.53070 * 5 4 2 7 7 C 1.53038 * 109.31400 * 305.43888 * 6 5 4 8 8 C 1.53045 * 109.53534 * 61.36970 * 7 6 5 9 9 C 1.46930 * 120.62941 * 185.39716 * 4 2 1 10 10 H 1.09001 * 109.58908 * 246.32783 * 9 4 2 11 11 C 1.53001 * 109.58718 * 6.61150 * 9 4 2 12 12 H 1.08998 * 109.99646 * 313.90738 * 11 9 4 13 13 C 1.54333 * 109.98994 * 192.87191 * 11 9 4 14 14 C 1.55154 * 103.01738 * 218.66549 * 13 11 9 15 15 C 1.54903 * 101.58602 * 35.30777 * 14 13 11 16 16 N 1.47023 * 109.88293 * 75.00299 * 11 9 4 17 17 C 1.36936 * 125.64743 * 298.39414 * 16 11 9 18 18 H 1.08004 * 120.00293 * 5.02107 * 17 16 11 19 19 C 1.38811 * 119.99732 * 185.01971 * 17 16 11 20 20 N 1.31621 * 120.00515 * 325.16277 * 19 17 16 21 21 Si 1.86803 * 119.99836 * 145.16615 * 19 17 16 22 22 H 1.48505 * 109.46661 * 269.99922 * 21 19 17 23 23 H 1.48502 * 109.47202 * 29.99346 * 21 19 17 24 24 H 1.48495 * 109.47385 * 149.99978 * 21 19 17 25 25 H 1.09002 * 109.46940 * 239.99673 * 1 2 3 26 26 H 1.08997 * 109.47364 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47028 * 120.00111 * 1 2 3 28 28 H 1.09000 * 109.46684 * 113.74737 * 5 4 2 29 29 H 1.09003 * 109.70666 * 353.46446 * 5 4 2 30 30 H 1.08998 * 109.49903 * 185.48800 * 6 5 4 31 31 H 1.08996 * 109.49745 * 65.39366 * 6 5 4 32 32 H 1.08996 * 109.46483 * 301.34571 * 7 6 5 33 33 H 1.09000 * 109.44620 * 181.37963 * 7 6 5 34 34 H 1.08995 * 109.49706 * 178.68548 * 8 7 6 35 35 H 1.08996 * 109.50391 * 58.58420 * 8 7 6 36 36 H 1.08992 * 110.85200 * 100.19864 * 13 11 9 37 37 H 1.09001 * 110.51520 * 336.97406 * 13 11 9 38 38 H 1.09007 * 111.00332 * 277.22776 * 14 13 11 39 39 H 1.09006 * 111.00437 * 153.38457 * 14 13 11 40 40 H 1.09001 * 110.37200 * 204.15633 * 15 14 13 41 41 H 1.08997 * 110.46638 * 81.87610 * 15 14 13 42 42 H 0.96999 * 119.99220 * 354.37461 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4653 -2.4455 -0.1161 6 6 1.8813 -3.3536 1.0453 7 6 3.4059 -3.4861 1.0632 8 6 4.0368 -2.1083 1.2773 9 6 3.6452 -1.1861 0.1184 10 1 4.0823 -1.5580 -0.8083 11 6 4.1558 0.2296 0.3944 12 1 3.6736 0.9377 -0.2795 13 6 5.6861 0.2852 0.2025 14 6 6.1482 1.2230 1.3490 15 6 5.1574 0.8454 2.4782 16 7 3.8772 0.5984 1.7901 17 6 2.6348 0.6912 2.3582 18 1 1.7597 0.4067 1.7927 19 6 2.5000 1.1510 3.6610 20 7 3.4192 0.8647 4.5585 21 14 1.0138 2.1761 4.1406 22 1 1.3153 3.6146 3.9278 23 1 -0.1485 1.7849 3.3033 24 1 0.6934 1.9440 5.5719 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 1.7225 -2.9215 -1.0624 29 1 0.3902 -2.2700 -0.0758 30 1 1.4321 -4.3382 0.9163 31 1 1.5428 -2.9192 1.9859 32 1 3.7458 -3.8974 0.1128 33 1 3.7028 -4.1514 1.8739 34 1 5.1217 -2.2066 1.3133 35 1 3.6781 -1.6856 2.2158 36 1 5.9402 0.7095 -0.7688 37 1 6.1218 -0.7073 0.3170 38 1 6.0376 2.2699 1.0660 39 1 7.1755 1.0056 1.6416 40 1 5.0554 1.6691 3.1847 41 1 5.4915 -0.0556 2.9928 42 1 4.1479 0.2658 4.3322 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025178709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:35 Heat of formation + Delta-G solvation = 37.206987 kcal Electronic energy + Delta-G solvation = -23108.751706 eV Core-core repulsion = 20091.380104 eV Total energy + Delta-G solvation = -3017.371602 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.28990 -37.13815 -36.59636 -32.71837 -32.37897 -31.30193 -28.93631 -28.79617 -27.15625 -24.62121 -23.84572 -22.49283 -20.54818 -20.05675 -19.51257 -18.26629 -17.45446 -16.22469 -15.38702 -15.15675 -14.64431 -14.10792 -13.86146 -13.62853 -13.37830 -13.27325 -12.91883 -12.73567 -12.49011 -12.05162 -11.85699 -11.65388 -11.57225 -11.25210 -10.99217 -10.80946 -10.58587 -10.48786 -10.21388 -10.14893 -9.99268 -9.95275 -9.74367 -9.58861 -9.33565 -8.14196 -7.97003 -7.73619 -6.56230 -5.85461 -2.67816 3.37902 3.61883 3.66550 3.71786 3.83124 4.80860 5.01289 5.10614 5.19999 5.34908 5.40606 5.55200 5.58139 5.62003 5.65631 5.71089 5.71655 5.75669 5.83011 5.95591 6.01958 6.09172 6.17391 6.25446 6.28674 6.37613 6.39399 6.49824 6.51877 6.62329 6.67719 6.72590 7.09170 7.21802 7.29089 7.33345 7.63944 8.09149 8.17988 8.74684 9.10206 9.26519 10.12365 10.71780 11.46600 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015343 B = 0.011499 C = 0.008973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.447472 B = 2434.401693 C = 3119.677335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.519 3.481 3 O -0.496 6.496 4 N -0.606 5.606 5 C 0.113 3.887 6 C -0.133 4.133 7 C -0.116 4.116 8 C -0.126 4.126 9 C 0.143 3.857 10 H 0.048 0.952 11 C 0.128 3.872 12 H 0.115 0.885 13 C -0.133 4.133 14 C -0.135 4.135 15 C 0.140 3.860 16 N -0.581 5.581 17 C -0.301 4.301 18 H 0.081 0.919 19 C -0.033 4.033 20 N -0.925 5.925 21 Si 1.038 2.962 22 H -0.298 1.298 23 H -0.297 1.297 24 H -0.298 1.298 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.096 0.904 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.011 0.989 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.697 -8.274 -10.556 13.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.308 3.692 3 O -0.372 6.372 4 N -0.341 5.341 5 C -0.011 4.011 6 C -0.172 4.172 7 C -0.154 4.154 8 C -0.164 4.164 9 C 0.038 3.962 10 H 0.066 0.934 11 C 0.021 3.979 12 H 0.132 0.868 13 C -0.172 4.172 14 C -0.173 4.173 15 C 0.015 3.985 16 N -0.305 5.305 17 C -0.429 4.429 18 H 0.099 0.901 19 C -0.232 4.232 20 N -0.569 5.569 21 Si 0.870 3.130 22 H -0.227 1.227 23 H -0.224 1.224 24 H -0.225 1.225 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.028 0.972 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.214 -6.816 -9.281 11.726 hybrid contribution 0.628 -1.189 -1.033 1.696 sum -1.586 -8.005 -10.314 13.152 Atomic orbital electron populations 1.22051 0.93970 1.04709 1.02850 1.20142 0.89677 0.83661 0.75701 1.90649 1.67193 1.31804 1.47556 1.47899 1.07118 1.05147 1.73901 1.21583 0.96795 0.85009 0.97732 1.21874 0.96815 0.98792 0.99683 1.21497 0.95164 0.98114 1.00577 1.21902 0.99161 0.93496 1.01819 1.21950 0.78706 0.99766 0.95800 0.93409 1.22360 0.91247 0.93054 0.91230 0.86841 1.22726 0.97720 0.98806 0.97901 1.22770 0.98216 0.99022 0.97304 1.21657 0.85693 0.97882 0.93311 1.44327 1.01321 1.80105 1.04751 1.20056 0.83820 1.41031 0.97966 0.90129 1.25395 1.03808 1.02312 0.91727 1.70757 1.16190 1.36251 1.33698 0.83879 0.76033 0.78282 0.74765 1.22670 1.22353 1.22504 0.89967 0.89561 0.90759 0.92494 0.90358 0.91858 0.91010 0.93085 0.92590 0.92637 0.88524 0.92508 0.92722 0.92097 0.92692 0.92266 0.97165 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.69 8.54 36.01 0.31 -2.39 16 2 C 0.52 10.15 4.72 -10.99 -0.05 10.10 16 3 O -0.50 -11.74 10.68 5.55 0.06 -11.68 16 4 N -0.61 -10.69 2.83 -165.19 -0.47 -11.15 16 5 C 0.11 1.52 6.34 -3.69 -0.02 1.49 16 6 C -0.13 -1.84 6.08 -26.62 -0.16 -2.00 16 7 C -0.12 -1.70 5.88 -26.69 -0.16 -1.86 16 8 C -0.13 -2.31 4.94 -26.61 -0.13 -2.44 16 9 C 0.14 2.65 2.52 -67.59 -0.17 2.48 16 10 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 11 C 0.13 2.74 2.32 -66.95 -0.16 2.58 16 12 H 0.12 2.72 4.92 -56.81 -0.28 2.44 16 13 C -0.13 -2.45 6.34 -24.89 -0.16 -2.61 16 14 C -0.13 -2.66 7.09 -24.59 -0.17 -2.84 16 15 C 0.14 3.40 5.15 -2.53 -0.01 3.39 16 16 N -0.58 -14.58 1.92 -162.57 -0.31 -14.89 16 17 C -0.30 -8.32 7.18 -15.06 -0.11 -8.43 16 18 H 0.08 2.17 3.75 -52.48 -0.20 1.98 16 19 C -0.03 -0.97 5.08 -17.43 -0.09 -1.05 16 20 N -0.93 -28.44 12.42 55.49 0.69 -27.75 16 21 Si 1.04 26.76 30.03 -169.99 -5.11 21.65 16 22 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 23 H -0.30 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 25 H 0.08 1.23 7.91 -51.93 -0.41 0.82 16 26 H 0.09 1.35 8.12 -51.93 -0.42 0.93 16 27 H 0.07 0.87 7.73 -51.93 -0.40 0.46 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.91 5.94 -51.93 -0.31 0.60 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.99 7.06 -51.93 -0.37 0.63 16 35 H 0.10 2.25 6.44 -51.93 -0.33 1.92 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.94 6.72 -51.93 -0.35 0.59 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.63 6.81 -51.93 -0.35 1.28 16 41 H 0.01 0.27 7.47 -51.93 -0.39 -0.12 16 42 H 0.27 8.13 5.97 -40.82 -0.24 7.89 16 LS Contribution 303.46 15.07 4.57 4.57 Total: -1.00 -32.46 303.46 -8.30 -40.76 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.65 Total: 2.06 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.09 Total: -3.56 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.09 Total: -53.80 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.06 Total: -11.68 kcal Atomic # 14 Polarization: 26.76 SS G_CDS: -5.11 Total: 21.65 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.46 -8.30 -40.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025178709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.966 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds