Wall clock time and date at job start Mon Mar 30 2020 00:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21286 * 119.99751 * 2 1 4 4 N 1.34768 * 120.00103 * 180.02562 * 2 1 3 5 5 C 1.46961 * 120.65756 * 5.22145 * 4 2 1 6 6 C 1.53187 * 108.88916 * 233.53070 * 5 4 2 7 7 C 1.53038 * 109.31400 * 305.43888 * 6 5 4 8 8 C 1.53045 * 109.53534 * 61.36970 * 7 6 5 9 9 C 1.46930 * 120.62941 * 185.39716 * 4 2 1 10 10 H 1.09001 * 109.58908 * 246.32783 * 9 4 2 11 11 C 1.53001 * 109.58718 * 6.61150 * 9 4 2 12 12 H 1.08998 * 109.99646 * 313.90738 * 11 9 4 13 13 C 1.54333 * 109.98994 * 192.87191 * 11 9 4 14 14 C 1.55154 * 103.01738 * 218.66549 * 13 11 9 15 15 C 1.54903 * 101.58602 * 35.30777 * 14 13 11 16 16 N 1.47023 * 109.88293 * 75.00299 * 11 9 4 17 17 C 1.36936 * 125.64743 * 298.39414 * 16 11 9 18 18 H 1.08004 * 120.00293 * 5.02107 * 17 16 11 19 19 C 1.38811 * 119.99732 * 185.01971 * 17 16 11 20 20 N 1.31621 * 120.00515 * 325.16277 * 19 17 16 21 21 Si 1.86803 * 119.99836 * 145.16615 * 19 17 16 22 22 H 1.48505 * 109.46661 * 269.99922 * 21 19 17 23 23 H 1.48502 * 109.47202 * 29.99346 * 21 19 17 24 24 H 1.48495 * 109.47385 * 149.99978 * 21 19 17 25 25 H 1.09002 * 109.46940 * 239.99673 * 1 2 3 26 26 H 1.08997 * 109.47364 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47028 * 120.00111 * 1 2 3 28 28 H 1.09000 * 109.46684 * 113.74737 * 5 4 2 29 29 H 1.09003 * 109.70666 * 353.46446 * 5 4 2 30 30 H 1.08998 * 109.49903 * 185.48800 * 6 5 4 31 31 H 1.08996 * 109.49745 * 65.39366 * 6 5 4 32 32 H 1.08996 * 109.46483 * 301.34571 * 7 6 5 33 33 H 1.09000 * 109.44620 * 181.37963 * 7 6 5 34 34 H 1.08995 * 109.49706 * 178.68548 * 8 7 6 35 35 H 1.08996 * 109.50391 * 58.58420 * 8 7 6 36 36 H 1.08992 * 110.85200 * 100.19864 * 13 11 9 37 37 H 1.09001 * 110.51520 * 336.97406 * 13 11 9 38 38 H 1.09007 * 111.00332 * 277.22776 * 14 13 11 39 39 H 1.09006 * 111.00437 * 153.38457 * 14 13 11 40 40 H 1.09001 * 110.37200 * 204.15633 * 15 14 13 41 41 H 1.08997 * 110.46638 * 81.87610 * 15 14 13 42 42 H 0.96999 * 119.99220 * 354.37461 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 1.4653 -2.4455 -0.1161 6 6 1.8813 -3.3536 1.0453 7 6 3.4059 -3.4861 1.0632 8 6 4.0368 -2.1083 1.2773 9 6 3.6452 -1.1861 0.1184 10 1 4.0823 -1.5580 -0.8083 11 6 4.1558 0.2296 0.3944 12 1 3.6736 0.9377 -0.2795 13 6 5.6861 0.2852 0.2025 14 6 6.1482 1.2230 1.3490 15 6 5.1574 0.8454 2.4782 16 7 3.8772 0.5984 1.7901 17 6 2.6348 0.6912 2.3582 18 1 1.7597 0.4067 1.7927 19 6 2.5000 1.1510 3.6610 20 7 3.4192 0.8647 4.5585 21 14 1.0138 2.1761 4.1406 22 1 1.3153 3.6146 3.9278 23 1 -0.1485 1.7849 3.3033 24 1 0.6934 1.9440 5.5719 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3634 1.0276 -0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 1.7225 -2.9215 -1.0624 29 1 0.3902 -2.2700 -0.0758 30 1 1.4321 -4.3382 0.9163 31 1 1.5428 -2.9192 1.9859 32 1 3.7458 -3.8974 0.1128 33 1 3.7028 -4.1514 1.8739 34 1 5.1217 -2.2066 1.3133 35 1 3.6781 -1.6856 2.2158 36 1 5.9402 0.7095 -0.7688 37 1 6.1218 -0.7073 0.3170 38 1 6.0376 2.2699 1.0660 39 1 7.1755 1.0056 1.6416 40 1 5.0554 1.6691 3.1847 41 1 5.4915 -0.0556 2.9928 42 1 4.1479 0.2658 4.3322 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025178709.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:35 Heat of formation + Delta-G solvation = 16.520091 kcal Electronic energy + Delta-G solvation = -23109.648757 eV Core-core repulsion = 20091.380104 eV Total energy + Delta-G solvation = -3018.268653 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 266.174 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.79630 -38.81486 -38.02467 -34.70514 -33.76823 -32.75016 -30.75574 -30.20140 -28.75333 -26.37239 -25.39745 -23.94848 -21.91092 -21.81016 -21.19384 -19.76607 -19.35709 -17.80789 -16.88163 -16.65545 -16.17138 -15.74981 -15.51099 -15.25277 -14.92651 -14.73341 -14.39204 -14.08123 -14.00841 -13.65002 -13.46090 -13.19791 -12.97210 -12.82029 -12.56959 -12.40341 -12.13397 -11.95727 -11.88706 -11.78974 -11.63886 -11.55805 -11.50057 -11.34934 -11.22669 -10.21209 -9.56158 -9.29767 -8.54059 -8.08674 -4.85087 1.50734 1.59972 1.75994 1.92739 2.35794 2.73576 3.32227 3.72777 3.76548 3.93126 3.97437 4.08189 4.14424 4.19917 4.24976 4.37193 4.44440 4.47176 4.52381 4.62845 4.67010 4.72630 4.82280 4.90410 4.96064 5.02525 5.03554 5.04906 5.12612 5.16528 5.25104 5.29416 5.34502 5.43026 5.62481 5.74529 5.99790 6.06136 6.56931 6.78559 7.14011 7.62772 8.02035 8.62691 9.25420 Molecular weight = 266.17amu Principal moments of inertia in cm(-1) A = 0.015343 B = 0.011499 C = 0.008973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.447472 B = 2434.401693 C = 3119.677335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.502 3.498 3 O -0.550 6.550 4 N -0.608 5.608 5 C 0.106 3.894 6 C -0.130 4.130 7 C -0.111 4.111 8 C -0.117 4.117 9 C 0.145 3.855 10 H 0.078 0.922 11 C 0.117 3.883 12 H 0.095 0.905 13 C -0.122 4.122 14 C -0.124 4.124 15 C 0.144 3.856 16 N -0.593 5.593 17 C -0.274 4.274 18 H 0.089 0.911 19 C -0.103 4.103 20 N -0.965 5.965 21 Si 1.079 2.921 22 H -0.307 1.307 23 H -0.269 1.269 24 H -0.304 1.304 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.118 0.882 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.038 0.962 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.014 0.986 41 H -0.005 1.005 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.504 -10.467 -13.567 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.293 3.707 3 O -0.430 6.430 4 N -0.342 5.342 5 C -0.016 4.016 6 C -0.169 4.169 7 C -0.149 4.149 8 C -0.155 4.155 9 C 0.039 3.961 10 H 0.095 0.905 11 C 0.012 3.988 12 H 0.112 0.888 13 C -0.160 4.160 14 C -0.162 4.162 15 C 0.018 3.982 16 N -0.317 5.317 17 C -0.403 4.403 18 H 0.106 0.894 19 C -0.296 4.296 20 N -0.613 5.613 21 Si 0.909 3.091 22 H -0.236 1.236 23 H -0.194 1.194 24 H -0.231 1.231 25 H 0.104 0.896 26 H 0.097 0.903 27 H 0.136 0.864 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.033 0.967 41 H 0.012 0.988 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.046 -9.061 -12.345 15.613 hybrid contribution 0.909 -0.569 -0.205 1.092 sum -2.138 -9.631 -12.550 15.963 Atomic orbital electron populations 1.22026 0.90716 1.05065 1.05107 1.20967 0.91483 0.83453 0.74803 1.90637 1.68609 1.33616 1.50113 1.48075 1.06983 1.06432 1.72685 1.21943 0.97757 0.82925 0.98931 1.21866 0.96215 1.00615 0.98154 1.21482 0.95664 0.95565 1.02188 1.21732 0.99301 0.95608 0.98901 1.21787 0.79838 0.97566 0.96884 0.90452 1.22424 0.93400 0.94546 0.88443 0.88799 1.22707 0.95424 0.99503 0.98405 1.22679 0.98424 0.99138 0.96003 1.21503 0.87033 0.95563 0.94090 1.44536 1.00799 1.79997 1.06387 1.20402 0.85315 1.37493 0.97117 0.89356 1.26357 1.05948 1.04563 0.92770 1.70842 1.17441 1.38637 1.34415 0.83267 0.74725 0.76513 0.74580 1.23609 1.19407 1.23149 0.89557 0.90327 0.86364 0.89159 0.88171 0.88085 0.94661 0.90065 0.92451 0.92618 0.94314 0.89834 0.90925 0.92634 0.89811 0.96731 0.98759 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.74 8.54 71.24 0.61 -4.13 16 2 C 0.50 18.88 4.72 87.66 0.41 19.29 16 3 O -0.55 -26.03 10.68 -3.05 -0.03 -26.06 16 4 N -0.61 -19.95 2.83 -794.93 -2.25 -22.20 16 5 C 0.11 2.40 6.34 86.35 0.55 2.95 16 6 C -0.13 -3.17 6.08 30.67 0.19 -2.98 16 7 C -0.11 -2.94 5.88 30.62 0.18 -2.76 16 8 C -0.12 -4.17 4.94 30.68 0.15 -4.02 16 9 C 0.14 5.05 2.52 44.98 0.11 5.17 16 10 H 0.08 2.31 8.10 -2.39 -0.02 2.29 16 11 C 0.12 4.96 2.32 45.34 0.11 5.06 16 12 H 0.10 4.50 4.92 -79.60 -0.39 4.11 16 13 C -0.12 -4.25 6.34 31.78 0.20 -4.05 16 14 C -0.12 -4.86 7.09 31.98 0.23 -4.63 16 15 C 0.14 7.32 5.15 86.85 0.45 7.77 16 16 N -0.59 -30.67 1.92 -668.25 -1.28 -31.95 16 17 C -0.27 -15.60 7.18 84.03 0.60 -15.00 16 18 H 0.09 4.83 3.75 -2.91 -0.01 4.82 16 19 C -0.10 -6.30 5.08 84.86 0.43 -5.87 16 20 N -0.97 -62.89 12.42 21.65 0.27 -62.63 16 21 Si 1.08 56.04 30.03 68.60 2.06 58.10 16 22 H -0.31 -16.17 7.11 99.48 0.71 -15.46 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.30 -15.92 7.11 99.48 0.71 -15.21 16 25 H 0.09 2.35 7.91 -2.39 -0.02 2.33 16 26 H 0.08 2.32 8.12 -2.39 -0.02 2.30 16 27 H 0.12 2.21 7.73 -2.39 -0.02 2.20 16 28 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.10 1.84 5.94 -2.39 -0.01 1.83 16 30 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.06 1.93 7.06 -2.39 -0.02 1.91 16 35 H 0.04 1.84 6.44 -2.39 -0.02 1.83 16 36 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.07 2.27 6.72 -2.39 -0.02 2.26 16 38 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 40 H 0.01 0.85 6.81 -2.39 -0.02 0.83 16 41 H -0.01 -0.27 7.47 -2.39 -0.02 -0.29 16 42 H 0.25 16.54 5.97 -92.71 -0.55 15.99 16 Total: -1.00 -76.91 303.46 3.82 -73.09 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 0.84 Total: 14.85 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 4.22 Total: -3.20 kcal Atomic # 7 Polarization: -113.51 SS G_CDS: -3.26 Total: -116.77 kcal Atomic # 8 Polarization: -26.03 SS G_CDS: -0.03 Total: -26.06 kcal Atomic # 14 Polarization: 56.04 SS G_CDS: 2.06 Total: 58.10 kcal Total: -76.91 3.82 -73.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025178709.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.610 kcal (2) G-P(sol) polarization free energy of solvation -76.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds